RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 TNNT2P45379 298 aaPredicted RBP8.62□□□□□ -1.03
SPG11-221ENST00000560299 NME9Q86XW9 330 aa8.62□□□□□ -1.03
SPG11-221ENST00000560299 KCNH5Q8NCM2 988 aa8.62□□□□□ -1.03
SPG11-221ENST00000560299 RGS17Q9UGC6 210 aaPredicted RBP8.62□□□□□ -1.03
SPG11-221ENST00000560299 SLIT3O75094 1523 aa8.62□□□□□ -1.03
SPG11-221ENST00000560299 ABCA3Q99758 1704 aa8.61□□□□□ -1.03
SPG11-221ENST00000560299 ANKRD26Q9UPS8 1709 aa8.61□□□□□ -1.03
SPG11-221ENST00000560299 NLRP6P59044 892 aa8.61□□□□□ -1.03
SPG11-221ENST00000560299 ABTB2Q8N961 1025 aa8.61□□□□□ -1.03
SPG11-221ENST00000560299 KIF24Q5T7B8 1368 aa8.61□□□□□ -1.03
SPG11-221ENST00000560299 BCL9LQ86UU0 1499 aa8.6□□□□□ -1.03
SPG11-221ENST00000560299 ONECUT3O60422 494 aaPredicted RBP8.6□□□□□ -1.03
SPG11-221ENST00000560299 WDR43Q15061 677 aaKnown RBP eCLIP8.6□□□□□ -1.03
SPG11-221ENST00000560299 FAM9BQ8IZU0 186 aa8.6□□□□□ -1.03
SPG11-221ENST00000560299 COL14A1Q05707 1796 aaKnown RBP8.6□□□□□ -1.03
SPG11-221ENST00000560299 AATKQ6ZMQ8 1374 aa8.6□□□□□ -1.03
SPG11-221ENST00000560299 PHRF1Q9P1Y6 1649 aaKnown RBP8.59□□□□□ -1.03
SPG11-221ENST00000560299 MTHFSP49914 203 aa8.59□□□□□ -1.03
SPG11-221ENST00000560299 LHX8Q68G74 356 aa8.59□□□□□ -1.03
SPG11-221ENST00000560299 TRPC5Q9UL62 973 aaPredicted RBP8.59□□□□□ -1.03
SPG11-221ENST00000560299 NUDCQ9Y266 331 aa8.59□□□□□ -1.03
SPG11-221ENST00000560299 OVOS2A0A0J9YW53 1432 aa8.58□□□□□ -1.04
SPG11-221ENST00000560299 ATRNO75882 1429 aa8.58□□□□□ -1.04
SPG11-221ENST00000560299 OVOS2Q6IE36 1432 aa8.58□□□□□ -1.04
SPG11-221ENST00000560299 GCP02774 474 aa8.58□□□□□ -1.04
SPG11-221ENST00000560299 XPCQ01831 940 aaPredicted RBP8.58□□□□□ -1.04
SPG11-221ENST00000560299 CCDC184Q52MB2 194 aa8.58□□□□□ -1.04
SPG11-221ENST00000560299 LMOD2Q6P5Q4 547 aa8.58□□□□□ -1.04
SPG11-221ENST00000560299 UNC5CLQ8IV45 518 aa8.58□□□□□ -1.04
SPG11-221ENST00000560299 PNISRQ8TF01 805 aaKnown RBP8.58□□□□□ -1.04
SPG11-221ENST00000560299 NGLY1Q96IV0 654 aa8.58□□□□□ -1.04
SPG11-221ENST00000560299 YTHDC1Q96MU7 727 aaKnown RBP8.58□□□□□ -1.04
SPG11-221ENST00000560299 PIK3C2AO00443 1686 aa8.58□□□□□ -1.04
SPG11-221ENST00000560299 AFF2P51816 1311 aa8.57□□□□□ -1.04
SPG11-221ENST00000560299 CENPBP07199 599 aaPredicted RBP8.57□□□□□ -1.04
SPG11-221ENST00000560299 PRKAR2AP13861 404 aaKnown RBP8.57□□□□□ -1.04
SPG11-221ENST00000560299 RBM6P78332 1123 aaKnown RBP8.57□□□□□ -1.04
SPG11-221ENST00000560299 VPS72Q15906 364 aa8.57□□□□□ -1.04
SPG11-221ENST00000560299 MEX3CQ5U5Q3 659 aaKnown RBP8.57□□□□□ -1.04
SPG11-221ENST00000560299 MAP2P11137 1827 aaKnown RBP8.57□□□□□ -1.04
SPG11-221ENST00000560299 LMO7Q8WWI1 1683 aa8.56□□□□□ -1.04
SPG11-221ENST00000560299 FAM83GA6ND36 823 aa8.56□□□□□ -1.04
SPG11-221ENST00000560299 PPM1GO15355 546 aaPredicted RBP8.56□□□□□ -1.04
SPG11-221ENST00000560299 ARHGEF25Q86VW2 580 aa8.56□□□□□ -1.04
SPG11-221ENST00000560299 PNNQ9H307 717 aaKnown RBP8.56□□□□□ -1.04
SPG11-221ENST00000560299 POLKQ9UBT6 870 aa8.56□□□□□ -1.04
SPG11-221ENST00000560299 ZRANB1Q9UGI0 708 aa8.56□□□□□ -1.04
SPG11-221ENST00000560299 USP21Q9UK80 565 aa8.56□□□□□ -1.04
SPG11-221ENST00000560299 PLEKHG2Q9H7P9 1386 aa8.56□□□□□ -1.04
SPG11-221ENST00000560299 NFAT5O94916 1531 aa8.55□□□□□ -1.04
SPG11-221ENST00000560299 DIAPH1O60610 1272 aaKnown RBP8.55□□□□□ -1.04
SPG11-221ENST00000560299 NUTM2GQ5VZR2 741 aa8.55□□□□□ -1.04
SPG11-221ENST00000560299 C8orf37Q96NL8 207 aa8.55□□□□□ -1.04
SPG11-221ENST00000560299 THRAP3Q9Y2W1 955 aaKnown RBP8.55□□□□□ -1.04
SPG11-221ENST00000560299 INSRP06213 1382 aa8.55□□□□□ -1.04
SPG11-221ENST00000560299 BLMP54132 1417 aaPredicted RBP8.54□□□□□ -1.04
SPG11-221ENST00000560299 RTL1A6NKG5 1358 aa8.54□□□□□ -1.04
SPG11-221ENST00000560299 KIAA0232Q92628 1395 aa8.54□□□□□ -1.04
SPG11-221ENST00000560299 NUTM2BA6NNL0 878 aaPredicted RBP8.54□□□□□ -1.04
SPG11-221ENST00000560299 NUTM2EB1AL46 878 aaPredicted RBP8.54□□□□□ -1.04
SPG11-221ENST00000560299 SOX12O15370 315 aa8.54□□□□□ -1.04
SPG11-221ENST00000560299 ADAMTS2O95450 1211 aa8.54□□□□□ -1.04
SPG11-221ENST00000560299 RXRBP28702 533 aa8.54□□□□□ -1.04
SPG11-221ENST00000560299 AMPHP49418 695 aa8.54□□□□□ -1.04
SPG11-221ENST00000560299 HAP1P54257 671 aaPredicted RBP8.54□□□□□ -1.04
SPG11-221ENST00000560299 RRS1Q15050 365 aaKnown RBP8.54□□□□□ -1.04
SPG11-221ENST00000560299 POTEAQ6S8J7 498 aa8.54□□□□□ -1.04
SPG11-221ENST00000560299 NUTM2AQ8IVF1 878 aaPredicted RBP8.54□□□□□ -1.04
SPG11-221ENST00000560299 GJD4Q96KN9 370 aaPredicted RBP8.54□□□□□ -1.04
SPG11-221ENST00000560299 QTRT2Q9H974 415 aaKnown RBP8.54□□□□□ -1.04
SPG11-221ENST00000560299 PRDM11Q9NQV5 511 aa8.54□□□□□ -1.04
SPG11-221ENST00000560299 FOXD4L1Q9NU39 408 aa8.54□□□□□ -1.04
SPG11-221ENST00000560299 NRAPQ86VF7 1730 aa8.54□□□□□ -1.04
SPG11-221ENST00000560299 COL18A1P39060 1754 aa8.53□□□□□ -1.04
SPG11-221ENST00000560299 PLCH1Q4KWH8 1693 aa8.53□□□□□ -1.04
SPG11-221ENST00000560299 GABBR2O75899 941 aa8.53□□□□□ -1.04
SPG11-221ENST00000560299 NEFMP07197 916 aa8.53□□□□□ -1.04
SPG11-221ENST00000560299 HNRNPUQ00839 825 aaKnown RBP eCLIP8.53□□□□□ -1.04
SPG11-221ENST00000560299 BARGINQ6ZT62 677 aa8.53□□□□□ -1.04
SPG11-221ENST00000560299 CABLES1Q8TDN4 633 aa8.53□□□□□ -1.04
SPG11-221ENST00000560299 CDCA7Q9BWT1 371 aaPredicted RBP8.53□□□□□ -1.04
SPG11-221ENST00000560299 ADAMTS8Q9UP79 889 aa8.53□□□□□ -1.04
SPG11-221ENST00000560299 EMILIN1Q9Y6C2 1016 aa8.53□□□□□ -1.04
SPG11-221ENST00000560299 SPATA31A5Q5VU36 1347 aa8.53□□□□□ -1.04
SPG11-221ENST00000560299 SPATA31A7Q8IWB4 1347 aa8.53□□□□□ -1.04
SPG11-221ENST00000560299 FLT4P35916 1363 aa8.52□□□□□ -1.05
SPG11-221ENST00000560299 C19orf67A6NJJ6 358 aa8.52□□□□□ -1.05
SPG11-221ENST00000560299 U2SURPO15042 1029 aaKnown RBP8.52□□□□□ -1.05
SPG11-221ENST00000560299 U2AF1L5P0DN76 240 aaPredicted RBP8.52□□□□□ -1.05
SPG11-221ENST00000560299 U2AF1Q01081 240 aaKnown RBP eCLIP8.52□□□□□ -1.05
SPG11-221ENST00000560299 NGEFQ8N5V2 710 aa8.52□□□□□ -1.05
SPG11-221ENST00000560299 SMG6Q86US8 1419 aaKnown RBP8.52□□□□□ -1.05
SPG11-221ENST00000560299 CAMTA1Q9Y6Y1 1673 aa8.52□□□□□ -1.05
SPG11-221ENST00000560299 MAP3K19Q56UN5 1328 aa8.52□□□□□ -1.05
SPG11-221ENST00000560299 COL5A2P05997 1499 aaPredicted RBP8.51□□□□□ -1.05
SPG11-221ENST00000560299 SPDYE2BA6NHP3 402 aa8.51□□□□□ -1.05
SPG11-221ENST00000560299 SOCS7O14512 581 aa8.51□□□□□ -1.05
SPG11-221ENST00000560299 SPDYE6P0CI01 402 aa8.51□□□□□ -1.05
SPG11-221ENST00000560299 FBLN1P23142 703 aa8.51□□□□□ -1.05
SPG11-221ENST00000560299 SPDYE2Q495Y8 402 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms