RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 SMC5Q8IY18 1101 aa10.18□□□□□ -0.78
USP3-211ENST00000559257 MSL3Q8N5Y2 521 aaKnown RBP10.18□□□□□ -0.78
USP3-211ENST00000559257 ZNF397Q8NF99 534 aaPredicted RBP10.18□□□□□ -0.78
USP3-211ENST00000559257 ARHGEF1Q92888 912 aaKnown RBP10.18□□□□□ -0.78
USP3-211ENST00000559257 FAM212AQ96EL1 285 aa10.18□□□□□ -0.78
USP3-211ENST00000559257 AQRO60306 1485 aaKnown RBP eCLIP10.17□□□□□ -0.785e-8■■■□□ 17.4
USP3-211ENST00000559257 SEC24BO95487 1268 aa10.17□□□□□ -0.78
USP3-211ENST00000559257 CT47B1P0C2W7 299 aaPredicted RBP10.17□□□□□ -0.78
USP3-211ENST00000559257 SART3Q15020 963 aaKnown RBP10.17□□□□□ -0.78
USP3-211ENST00000559257 KANK4Q5T7N3 995 aaPredicted RBP10.17□□□□□ -0.78
USP3-211ENST00000559257 CC2D2AQ9P2K1 1620 aa10.17□□□□□ -0.78
USP3-211ENST00000559257 TRIM66O15016 1216 aa10.17□□□□□ -0.78
USP3-211ENST00000559257 PAX7P23759 505 aa10.17□□□□□ -0.78
USP3-211ENST00000559257 TEX35Q5T0J7 233 aa10.17□□□□□ -0.78
USP3-211ENST00000559257 SMC3Q9UQE7 1217 aa10.17□□□□□ -0.78
USP3-211ENST00000559257 CUL7Q14999 1698 aa10.16□□□□□ -0.78
USP3-211ENST00000559257 EIF4G2P78344 907 aaKnown RBP eCLIP10.16□□□□□ -0.78
USP3-211ENST00000559257 SLFNL1Q499Z3 407 aa10.16□□□□□ -0.78
USP3-211ENST00000559257 IQUBQ8NA54 791 aa10.16□□□□□ -0.78
USP3-211ENST00000559257 FYCO1Q9BQS8 1478 aa10.16□□□□□ -0.78
USP3-211ENST00000559257 C21orf2O43822 256 aa10.15□□□□□ -0.78
USP3-211ENST00000559257 ZSCAN23Q3MJ62 389 aa10.15□□□□□ -0.78
USP3-211ENST00000559257 HSCBQ8IWL3 235 aa10.15□□□□□ -0.78
USP3-211ENST00000559257 KLHL23Q8NBE8 558 aa10.15□□□□□ -0.78
USP3-211ENST00000559257 INSRP06213 1382 aa10.15□□□□□ -0.78
USP3-211ENST00000559257 MMS22LQ6ZRQ5 1243 aa10.15□□□□□ -0.78
USP3-211ENST00000559257 EXOC8Q8IYI6 725 aa10.15□□□□□ -0.78
USP3-211ENST00000559257 ETAA1Q9NY74 926 aa10.15□□□□□ -0.78
USP3-211ENST00000559257 CARMIL1Q5VZK9 1371 aa10.14□□□□□ -0.79
USP3-211ENST00000559257 EIF3JO75822 258 aaKnown RBP10.14□□□□□ -0.79
USP3-211ENST00000559257 CPP00450 1065 aa10.14□□□□□ -0.79
USP3-211ENST00000559257 CD151P48509 253 aa10.14□□□□□ -0.79
USP3-211ENST00000559257 CCT2P78371 535 aaKnown RBP10.14□□□□□ -0.79
USP3-211ENST00000559257 PACS2Q86VP3 889 aa10.14□□□□□ -0.79
USP3-211ENST00000559257 SNX21Q969T3 373 aa10.14□□□□□ -0.79
USP3-211ENST00000559257 RRP15Q9Y3B9 282 aaKnown RBP10.14□□□□□ -0.79
USP3-211ENST00000559257 RTEL1-TNFRSF6BF6WH68 1400 aa10.14□□□□□ -0.79
USP3-211ENST00000559257 RAD54L2Q9Y4B4 1467 aa10.14□□□□□ -0.79
USP3-211ENST00000559257 CADPSQ9ULU8 1353 aa10.14□□□□□ -0.79
USP3-211ENST00000559257 ADCY2Q08462 1091 aa10.14□□□□□ -0.79
USP3-211ENST00000559257 MORC1Q86VD1 984 aa10.14□□□□□ -0.79
USP3-211ENST00000559257 PPM1EQ8WY54 764 aa10.14□□□□□ -0.79
USP3-211ENST00000559257 TATDN2Q93075 761 aa10.14□□□□□ -0.79
USP3-211ENST00000559257 ZMYM4Q5VZL5 1548 aa10.13□□□□□ -0.79
USP3-211ENST00000559257 NUCB2P80303 420 aa10.13□□□□□ -0.79
USP3-211ENST00000559257 GPS2Q13227 327 aa10.13□□□□□ -0.79
USP3-211ENST00000559257 MYBPC2Q14324 1141 aa10.13□□□□□ -0.79
USP3-211ENST00000559257 ZRSR2Q15696 482 aaKnown RBP10.13□□□□□ -0.79
USP3-211ENST00000559257 KRBA2Q6ZNG9 492 aa10.13□□□□□ -0.79
USP3-211ENST00000559257 KDM4CQ9H3R0 1056 aa10.13□□□□□ -0.79
USP3-211ENST00000559257 EIF3AQ14152 1382 aaKnown RBP10.13□□□□□ -0.79
USP3-211ENST00000559257 SMTNL1A8MU46 457 aa10.13□□□□□ -0.79
USP3-211ENST00000559257 LRSAM1Q6UWE0 723 aa10.13□□□□□ -0.79
USP3-211ENST00000559257 CCDC191Q8NCU4 936 aa10.13□□□□□ -0.79
USP3-211ENST00000559257 STAG1Q8WVM7 1258 aa10.13□□□□□ -0.79
USP3-211ENST00000559257 NUB1Q9Y5A7 615 aa10.13□□□□□ -0.79
USP3-211ENST00000559257 V9GYY5 206 aaPredicted RBP10.13□□□□□ -0.79
USP3-211ENST00000559257 SCP2P22307 547 aa10.12□□□□□ -0.79
USP3-211ENST00000559257 RBM5P52756 815 aaKnown RBP eCLIP10.12□□□□□ -0.79
USP3-211ENST00000559257 FBXO18Q8NFZ0 1043 aa10.12□□□□□ -0.79
USP3-211ENST00000559257 GOLGA5Q8TBA6 731 aa10.12□□□□□ -0.79
USP3-211ENST00000559257 CCDC97Q96F63 343 aaPredicted RBP10.12□□□□□ -0.79
USP3-211ENST00000559257 FGD5Q6ZNL6 1462 aa10.12□□□□□ -0.79
USP3-211ENST00000559257 SPAG9O60271 1321 aaKnown RBP10.12□□□□□ -0.79
USP3-211ENST00000559257 DHX29Q7Z478 1369 aaKnown RBP10.12□□□□□ -0.79
USP3-211ENST00000559257 PLEKHH2Q8IVE3 1493 aa10.11□□□□□ -0.79
USP3-211ENST00000559257 POLD1P28340 1107 aa10.11□□□□□ -0.79
USP3-211ENST00000559257 PRIM1P49642 420 aaKnown RBP10.11□□□□□ -0.79
USP3-211ENST00000559257 TRAF1Q13077 416 aa10.11□□□□□ -0.79
USP3-211ENST00000559257 BMS1Q14692 1282 aaKnown RBP10.11□□□□□ -0.79
USP3-211ENST00000559257 DDX46Q7L014 1031 aaKnown RBP10.11□□□□□ -0.79
USP3-211ENST00000559257 SDR16C5Q8N3Y7 309 aa10.11□□□□□ -0.79
USP3-211ENST00000559257 LCMT1Q9UIC8 334 aa10.11□□□□□ -0.79
USP3-211ENST00000559257 PCF11O94913 1555 aaKnown RBP10.11□□□□□ -0.79
USP3-211ENST00000559257 TPM1P09493 284 aa10.11□□□□□ -0.79
USP3-211ENST00000559257 FMNL3Q8IVF7 1028 aa10.11□□□□□ -0.79
USP3-211ENST00000559257 SPRYD3Q8NCJ5 442 aa10.11□□□□□ -0.79
USP3-211ENST00000559257 GPT2Q8TD30 523 aa10.11□□□□□ -0.79
USP3-211ENST00000559257 FAXDC2Q96IV6 333 aa10.11□□□□□ -0.79
USP3-211ENST00000559257 THOC2Q8NI27 1593 aaKnown RBP10.11□□□□□ -0.79
USP3-211ENST00000559257 DNMBPQ6XZF7 1577 aa10.1□□□□□ -0.79
USP3-211ENST00000559257 SETSIPP0DME0 302 aa10.1□□□□□ -0.79
USP3-211ENST00000559257 MAGEA8P43361 318 aa10.1□□□□□ -0.79
USP3-211ENST00000559257 TPM4P67936 248 aa10.1□□□□□ -0.79
USP3-211ENST00000559257 AP1ARQ63HQ0 302 aa10.1□□□□□ -0.79
USP3-211ENST00000559257 KIF21AQ7Z4S6 1674 aa10.1□□□□□ -0.79
USP3-211ENST00000559257 SGSM2O43147 1006 aa10.1□□□□□ -0.79
USP3-211ENST00000559257 CCP110O43303 1012 aa10.1□□□□□ -0.79
USP3-211ENST00000559257 SMC2O95347 1197 aa10.1□□□□□ -0.79
USP3-211ENST00000559257 E2F4Q16254 413 aa10.1□□□□□ -0.79
USP3-211ENST00000559257 RNF20Q5VTR2 975 aa10.1□□□□□ -0.79
USP3-211ENST00000559257 BRD4O60885 1362 aaPredicted RBP10.1□□□□□ -0.79
USP3-211ENST00000559257 CASKIN1Q8WXD9 1431 aa10.1□□□□□ -0.79
USP3-211ENST00000559257 PLIN1O60240 522 aa10.09□□□□□ -0.79
USP3-211ENST00000559257 ABCD1P33897 745 aa10.09□□□□□ -0.79
USP3-211ENST00000559257 RBM6P78332 1123 aaKnown RBP10.09□□□□□ -0.79
USP3-211ENST00000559257 LRRFIP2Q9Y608 721 aaKnown RBP10.09□□□□□ -0.79
USP3-211ENST00000559257 ABCA10Q8WWZ4 1543 aa10.09□□□□□ -0.79
USP3-211ENST00000559257 CAND2O75155 1236 aa10.09□□□□□ -0.79
USP3-211ENST00000559257 PPFIA2O75334 1257 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms