RNA–Protein interactions for RNA: ENST00000558768.5

TRPM1-208, Transcript of transient receptor potential cation channel subfamily M member 1, human

APPRIS ALT2 TSL 1 (best)

Gene TRPM1, Length 4,581 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRPM1-208	ENST00000558768	ANTXR1	Q9H6X2	564 aa		11.43	□□□□□ -0.58
TRPM1-208	ENST00000558768	TEX14	Q8IWB6	1497 aa		11.43	□□□□□ -0.58
TRPM1-208	ENST00000558768	PDC	P20941	246 aa		11.43	□□□□□ -0.58
TRPM1-208	ENST00000558768	LMAN1	P49257	510 aa		11.43	□□□□□ -0.58
TRPM1-208	ENST00000558768	RNF187	Q5TA31	235 aa	Predicted RBP	11.43	□□□□□ -0.58
TRPM1-208	ENST00000558768	SNX21	Q969T3	373 aa		11.43	□□□□□ -0.58
TRPM1-208	ENST00000558768	MARCH6	O60337	910 aa		11.43	□□□□□ -0.58
TRPM1-208	ENST00000558768	AKAP17A	Q02040	695 aa	Known RBP	11.43	□□□□□ -0.58
TRPM1-208	ENST00000558768	SAMD1	Q6SPF0	538 aa	Predicted RBP	11.43	□□□□□ -0.58
TRPM1-208	ENST00000558768	MPHOSPH10	O00566	681 aa	Known RBP	11.42	□□□□□ -0.58
TRPM1-208	ENST00000558768	SEPT6	Q14141	434 aa		11.42	□□□□□ -0.58
TRPM1-208	ENST00000558768	ERBIN	Q96RT1	1412 aa		11.42	□□□□□ -0.58
TRPM1-208	ENST00000558768		A0A0G2JS52	829 aa		11.42	□□□□□ -0.58
TRPM1-208	ENST00000558768	SYNE3	Q6ZMZ3	975 aa		11.42	□□□□□ -0.58
TRPM1-208	ENST00000558768	TAX1BP1	Q86VP1	789 aa		11.42	□□□□□ -0.58
TRPM1-208	ENST00000558768	ZKSCAN5	Q9Y2L8	839 aa		11.42	□□□□□ -0.58
TRPM1-208	ENST00000558768	JAKMIP3	Q5VZ66	844 aa		11.42	□□□□□ -0.58
TRPM1-208	ENST00000558768	SWAP70	Q9UH65	585 aa		11.42	□□□□□ -0.58
TRPM1-208	ENST00000558768	LIG1	P18858	919 aa		11.42	□□□□□ -0.58
TRPM1-208	ENST00000558768	GBP6	Q6ZN66	633 aa		11.42	□□□□□ -0.58
TRPM1-208	ENST00000558768	MPND	Q8N594	471 aa		11.42	□□□□□ -0.58
TRPM1-208	ENST00000558768	CDC45	O75419	566 aa		11.41	□□□□□ -0.58
TRPM1-208	ENST00000558768	SEPT7	Q16181	437 aa	Known RBP	11.41	□□□□□ -0.58
TRPM1-208	ENST00000558768	WDR63	Q8IWG1	891 aa		11.41	□□□□□ -0.58
TRPM1-208	ENST00000558768	CNPY4	Q8N129	248 aa		11.41	□□□□□ -0.58
TRPM1-208	ENST00000558768	CPLX1	O14810	134 aa		11.41	□□□□□ -0.58
TRPM1-208	ENST00000558768	CCDC181	Q5TID7	509 aa		11.41	□□□□□ -0.58
TRPM1-208	ENST00000558768	SMC5	Q8IY18	1101 aa		11.41	□□□□□ -0.58
TRPM1-208	ENST00000558768	LUC7L	Q9NQ29	371 aa	Known RBP	11.41	□□□□□ -0.58
TRPM1-208	ENST00000558768	MAP2K1	Q02750	393 aa	Predicted RBP	11.41	□□□□□ -0.58
TRPM1-208	ENST00000558768	FAM114A1	Q8IWE2	563 aa		11.41	□□□□□ -0.58
TRPM1-208	ENST00000558768	ANO2	Q9NQ90	1003 aa		11.41	□□□□□ -0.58
TRPM1-208	ENST00000558768	FBXO3	Q9UK99	471 aa		11.41	□□□□□ -0.58
TRPM1-208	ENST00000558768	PIP4K2A	P48426	406 aa	Predicted RBP	11.4	□□□□□ -0.58
TRPM1-208	ENST00000558768	HSP90AB2P	Q58FF8	381 aa		11.4	□□□□□ -0.58
TRPM1-208	ENST00000558768	FBXW7	Q969H0	707 aa		11.4	□□□□□ -0.58
TRPM1-208	ENST00000558768	PPP1R9B	Q96SB3	815 aa		11.4	□□□□□ -0.58
TRPM1-208	ENST00000558768	TCOF1	Q13428	1488 aa	Known RBP	11.4	□□□□□ -0.58
TRPM1-208	ENST00000558768	VGLL3	A8MV65	326 aa		11.4	□□□□□ -0.58
TRPM1-208	ENST00000558768	RARS	P54136	660 aa	Known RBP	11.4	□□□□□ -0.58
TRPM1-208	ENST00000558768	RAB3GAP1	Q15042	981 aa		11.4	□□□□□ -0.58
TRPM1-208	ENST00000558768	NOL7	Q9UMY1	257 aa	Known RBP	11.4	□□□□□ -0.58
TRPM1-208	ENST00000558768	ABCC5	O15440	1437 aa		11.4	□□□□□ -0.58
TRPM1-208	ENST00000558768	ZNF622	Q969S3	477 aa	Known RBP eCLIP	11.4	□□□□□ -0.58
TRPM1-208	ENST00000558768	FEZ1	Q99689	392 aa		11.4	□□□□□ -0.58
TRPM1-208	ENST00000558768	ZNHIT6	Q9NWK9	470 aa	Known RBP	11.4	□□□□□ -0.58
TRPM1-208	ENST00000558768	MRVI1	Q9Y6F6	885 aa		11.4	□□□□□ -0.58
TRPM1-208	ENST00000558768	UGGT2	Q9NYU1	1516 aa		11.4	□□□□□ -0.59
TRPM1-208	ENST00000558768	BAG4	O95429	457 aa	Known RBP	11.4	□□□□□ -0.59
TRPM1-208	ENST00000558768	CFAP45	Q9UL16	551 aa		11.4	□□□□□ -0.59
TRPM1-208	ENST00000558768	RAD54L2	Q9Y4B4	1467 aa		11.39	□□□□□ -0.59
TRPM1-208	ENST00000558768	BLM	P54132	1417 aa	Predicted RBP	11.39	□□□□□ -0.59
TRPM1-208	ENST00000558768		A0A1B0GUL7	405 aa		11.39	□□□□□ -0.59
TRPM1-208	ENST00000558768	SSFA2	P28290	1259 aa		11.39	□□□□□ -0.59
TRPM1-208	ENST00000558768	TCP11L2	Q8N4U5	519 aa		11.39	□□□□□ -0.59
TRPM1-208	ENST00000558768	ZMYM4	Q5VZL5	1548 aa		11.39	□□□□□ -0.59
TRPM1-208	ENST00000558768	PER1	O15534	1290 aa	Predicted RBP	11.39	□□□□□ -0.59
TRPM1-208	ENST00000558768	ZMYM3	Q14202	1370 aa		11.39	□□□□□ -0.59
TRPM1-208	ENST00000558768	POTEB2	H3BUK9	544 aa		11.39	□□□□□ -0.59
TRPM1-208	ENST00000558768	CCDC175	P0C221	793 aa		11.39	□□□□□ -0.59
TRPM1-208	ENST00000558768	FMNL2	Q96PY5	1086 aa		11.39	□□□□□ -0.59
TRPM1-208	ENST00000558768	CBFA2T2	O43439	604 aa		11.38	□□□□□ -0.59
TRPM1-208	ENST00000558768	HSPA4	P34932	840 aa		11.38	□□□□□ -0.59
TRPM1-208	ENST00000558768	STAC3	Q96MF2	364 aa		11.38	□□□□□ -0.59
TRPM1-208	ENST00000558768	LRRFIP2	Q9Y608	721 aa	Known RBP	11.38	□□□□□ -0.59
TRPM1-208	ENST00000558768	PLEKHH1	Q9ULM0	1364 aa		11.38	□□□□□ -0.59
TRPM1-208	ENST00000558768	PPFIBP1	Q86W92	1011 aa		11.38	□□□□□ -0.59
TRPM1-208	ENST00000558768	SUDS3	Q9H7L9	328 aa	Predicted RBP	11.38	□□□□□ -0.59
TRPM1-208	ENST00000558768	FAM177A1	Q8N128	213 aa	Predicted RBP	11.38	□□□□□ -0.59
TRPM1-208	ENST00000558768	MYCBP	Q99417	103 aa	Predicted RBP	11.38	□□□□□ -0.59
TRPM1-208	ENST00000558768	PCDHB15	Q9Y5E8	787 aa		11.38	□□□□□ -0.59
TRPM1-208	ENST00000558768	FANCD2	Q9BXW9	1451 aa		11.38	□□□□□ -0.59
TRPM1-208	ENST00000558768	THOC2	Q8NI27	1593 aa	Known RBP	11.38	□□□□□ -0.59
TRPM1-208	ENST00000558768	GOLGA6L9	A6NEM1	432 aa		11.37	□□□□□ -0.59
TRPM1-208	ENST00000558768	SERPINC1	P01008	464 aa		11.37	□□□□□ -0.59
TRPM1-208	ENST00000558768	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.37	□□□□□ -0.59
TRPM1-208	ENST00000558768	FIBP	O43427	364 aa		11.37	□□□□□ -0.59
TRPM1-208	ENST00000558768	NEMF	O60524	1076 aa		11.37	□□□□□ -0.59
TRPM1-208	ENST00000558768	SRPK2	P78362	688 aa	Known RBP	11.37	□□□□□ -0.59
TRPM1-208	ENST00000558768	C10orf67	Q8IYJ2	551 aa		11.37	□□□□□ -0.59
TRPM1-208	ENST00000558768	RNF168	Q8IYW5	571 aa	Predicted RBP	11.37	□□□□□ -0.59
TRPM1-208	ENST00000558768	GCC1	Q96CN9	775 aa		11.37	□□□□□ -0.59
TRPM1-208	ENST00000558768	PAXBP1	Q9Y5B6	917 aa		11.37	□□□□□ -0.59
TRPM1-208	ENST00000558768	ZSCAN12	O43309	604 aa		11.36	□□□□□ -0.59
TRPM1-208	ENST00000558768	CEP83	Q9Y592	693 aa		11.36	□□□□□ -0.59
TRPM1-208	ENST00000558768	TXLNA	P40222	546 aa		11.36	□□□□□ -0.59
TRPM1-208	ENST00000558768	SMC1A	Q14683	1233 aa	Known RBP	11.36	□□□□□ -0.59
TRPM1-208	ENST00000558768	DAAM2	Q86T65	1068 aa		11.36	□□□□□ -0.59
TRPM1-208	ENST00000558768	MICALL1	Q8N3F8	863 aa		11.36	□□□□□ -0.59
TRPM1-208	ENST00000558768	TNMD	Q9H2S6	317 aa		11.36	□□□□□ -0.59
TRPM1-208	ENST00000558768	WDR33	Q9C0J8	1336 aa	Known RBP	11.36	□□□□□ -0.59
TRPM1-208	ENST00000558768	ABCA5	Q8WWZ7	1642 aa		11.36	□□□□□ -0.59
TRPM1-208	ENST00000558768	GOLIM4	O00461	696 aa		11.36	□□□□□ -0.59
TRPM1-208	ENST00000558768	ZNF500	O60304	480 aa	Predicted RBP	11.36	□□□□□ -0.59
TRPM1-208	ENST00000558768	URI1	O94763	535 aa	Predicted RBP	11.36	□□□□□ -0.59
TRPM1-208	ENST00000558768	SPECC1L	Q69YQ0	1117 aa		11.36	□□□□□ -0.59
TRPM1-208	ENST00000558768	RSRC1	Q96IZ7	334 aa	Known RBP	11.36	□□□□□ -0.59
TRPM1-208	ENST00000558768	HNRNPM	P52272	730 aa	Known RBP eCLIP	11.36	□□□□□ -0.59
TRPM1-208	ENST00000558768	LRRFIP1	Q32MZ4	808 aa	Known RBP	11.36	□□□□□ -0.59
TRPM1-208	ENST00000558768	CHD1L	Q86WJ1	897 aa		11.36	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms