RNA–Protein interactions for RNA: ENST00000558763.1

SMAD3-207, Transcript of SMAD family member 3, humanhuman

TSL 2

Gene SMAD3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-207ENST00000558763 U2AF1Q01081 240 aaKnown RBP eCLIP17.06■□□□□ 0.32
SMAD3-207ENST00000558763 TCP11L2Q8N4U5 519 aa17.06■□□□□ 0.32
SMAD3-207ENST00000558763 WWC1Q8IX03 1113 aa17.06■□□□□ 0.32
SMAD3-207ENST00000558763 COL16A1Q07092 1604 aaPredicted RBP17.05■□□□□ 0.32
SMAD3-207ENST00000558763 DIAPH1O60610 1272 aaKnown RBP17.04■□□□□ 0.32
SMAD3-207ENST00000558763 RRP1P56182 461 aaKnown RBP17.04■□□□□ 0.32
SMAD3-207ENST00000558763 NCBP3Q53F19 620 aaKnown RBP17.04■□□□□ 0.32
SMAD3-207ENST00000558763 ARHGEF10O15013 1369 aa17.04■□□□□ 0.32
SMAD3-207ENST00000558763 CCDC27Q2M243 656 aa17.03■□□□□ 0.32
SMAD3-207ENST00000558763 MED1Q15648 1581 aaPredicted RBP17.03■□□□□ 0.32
SMAD3-207ENST00000558763 RRP7AQ9Y3A4 280 aaKnown RBP17.02■□□□□ 0.32
SMAD3-207ENST00000558763 PHRF1Q9P1Y6 1649 aaKnown RBP17.02■□□□□ 0.32
SMAD3-207ENST00000558763 CABLES1Q8TDN4 633 aa17.02■□□□□ 0.31
SMAD3-207ENST00000558763 SLIT3O75094 1523 aa17.01■□□□□ 0.31
SMAD3-207ENST00000558763 U2SURPO15042 1029 aaKnown RBP17.01■□□□□ 0.31
SMAD3-207ENST00000558763 RRS1Q15050 365 aaKnown RBP17.01■□□□□ 0.31
SMAD3-207ENST00000558763 LRRC59Q96AG4 307 aaKnown RBP17.01■□□□□ 0.31
SMAD3-207ENST00000558763 USP19O94966 1318 aa17.01■□□□□ 0.31
SMAD3-207ENST00000558763 RGPD1P0DJD0 1748 aa17.01■□□□□ 0.31
SMAD3-207ENST00000558763 CRYBG1Q9Y4K1 1723 aa17.01■□□□□ 0.31
SMAD3-207ENST00000558763 E9PSI1 815 aa17■□□□□ 0.31
SMAD3-207ENST00000558763 IL13P35225 146 aa17■□□□□ 0.31
SMAD3-207ENST00000558763 PPP4R2Q9NY27 417 aa17■□□□□ 0.31
SMAD3-207ENST00000558763 PPM1GO15355 546 aaPredicted RBP17■□□□□ 0.31
SMAD3-207ENST00000558763 NFAT5O94916 1531 aa17■□□□□ 0.31
SMAD3-207ENST00000558763 RSPH6AQ9H0K4 717 aa16.99■□□□□ 0.31
SMAD3-207ENST00000558763 ABCA3Q99758 1704 aa16.99■□□□□ 0.31
SMAD3-207ENST00000558763 ZBTB7CA1YPR0 619 aa16.98■□□□□ 0.31
SMAD3-207ENST00000558763 GCP02774 474 aa16.98■□□□□ 0.31
SMAD3-207ENST00000558763 NEUROD2Q15784 382 aa16.98■□□□□ 0.31
SMAD3-207ENST00000558763 KCNH5Q8NCM2 988 aa16.98■□□□□ 0.31
SMAD3-207ENST00000558763 LTN1O94822 1766 aa16.98■□□□□ 0.31
SMAD3-207ENST00000558763 MAP3K19Q56UN5 1328 aa16.97■□□□□ 0.31
SMAD3-207ENST00000558763 FCHSD2O94868 740 aa16.96■□□□□ 0.31
SMAD3-207ENST00000558763 TMPOP42166 694 aaKnown RBP16.96■□□□□ 0.31
SMAD3-207ENST00000558763 HAP1P54257 671 aaPredicted RBP16.96■□□□□ 0.31
SMAD3-207ENST00000558763 WDR63Q8IWG1 891 aa16.96■□□□□ 0.31
SMAD3-207ENST00000558763 TRIM35Q9UPQ4 493 aa16.96■□□□□ 0.31
SMAD3-207ENST00000558763 COL22A1Q8NFW1 1626 aaPredicted RBP16.95■□□□□ 0.3
SMAD3-207ENST00000558763 HSPA1LP34931 641 aa16.95■□□□□ 0.3
SMAD3-207ENST00000558763 ZC3H6P61129 1189 aaKnown RBP16.95■□□□□ 0.3
SMAD3-207ENST00000558763 DLG5Q8TDM6 1919 aa16.95■□□□□ 0.3
SMAD3-207ENST00000558763 PLIN1O60240 522 aa16.93■□□□□ 0.3
SMAD3-207ENST00000558763 PRKAR2BP31323 418 aa16.93■□□□□ 0.3
SMAD3-207ENST00000558763 AMPHP49418 695 aa16.93■□□□□ 0.3
SMAD3-207ENST00000558763 MAPK8IP3Q9UPT6 1336 aa16.92■□□□□ 0.3
SMAD3-207ENST00000558763 EIF4A2Q14240 407 aaKnown RBP16.92■□□□□ 0.3
SMAD3-207ENST00000558763 B4GALNT3Q6L9W6 998 aa16.92■□□□□ 0.3
SMAD3-207ENST00000558763 PHACTR3Q96KR7 559 aa16.91■□□□□ 0.3
SMAD3-207ENST00000558763 KIAA0232Q92628 1395 aa16.91■□□□□ 0.3
SMAD3-207ENST00000558763 HMOX1P09601 288 aa16.91■□□□□ 0.3
SMAD3-207ENST00000558763 ARHGEF25Q86VW2 580 aa16.91■□□□□ 0.3
SMAD3-207ENST00000558763 FLT4P35916 1363 aa16.91■□□□□ 0.3
SMAD3-207ENST00000558763 JCADQ9P266 1359 aa16.91■□□□□ 0.3
SMAD3-207ENST00000558763 HSP90AB2PQ58FF8 381 aa16.9■□□□□ 0.3
SMAD3-207ENST00000558763 HOXC9P31274 260 aa16.89■□□□□ 0.3
SMAD3-207ENST00000558763 EXOC6Q8TAG9 804 aa16.89■□□□□ 0.3
SMAD3-207ENST00000558763 PNNQ9H307 717 aaKnown RBP16.89■□□□□ 0.3
SMAD3-207ENST00000558763 NUTM2BA6NNL0 878 aaPredicted RBP16.89■□□□□ 0.29
SMAD3-207ENST00000558763 NUTM2EB1AL46 878 aaPredicted RBP16.89■□□□□ 0.29
SMAD3-207ENST00000558763 CHRNA2Q15822 529 aa16.89■□□□□ 0.29
SMAD3-207ENST00000558763 C20orf194Q5TEA3 1177 aa16.89■□□□□ 0.29
SMAD3-207ENST00000558763 NUTM2AQ8IVF1 878 aaPredicted RBP16.89■□□□□ 0.29
SMAD3-207ENST00000558763 RTL1A6NKG5 1358 aa16.89■□□□□ 0.29
SMAD3-207ENST00000558763 RIPK4P57078 832 aa16.88■□□□□ 0.29
SMAD3-207ENST00000558763 PRDM11Q9NQV5 511 aa16.88■□□□□ 0.29
SMAD3-207ENST00000558763 CPDO75976 1380 aa16.88■□□□□ 0.29
SMAD3-207ENST00000558763 KIF24Q5T7B8 1368 aa16.88■□□□□ 0.29
SMAD3-207ENST00000558763 IL16Q14005 1332 aa16.87■□□□□ 0.29
SMAD3-207ENST00000558763 RGPD5Q99666 1765 aa16.87■□□□□ 0.29
SMAD3-207ENST00000558763 NFE2L2Q16236 605 aa16.86■□□□□ 0.29
SMAD3-207ENST00000558763 AEBP1Q8IUX7 1158 aa16.86■□□□□ 0.29
SMAD3-207ENST00000558763 FANCIQ9NVI1 1328 aa16.86■□□□□ 0.29
SMAD3-207ENST00000558763 BCAR3O75815 825 aa16.86■□□□□ 0.29
SMAD3-207ENST00000558763 ADAMTS2O95450 1211 aa16.86■□□□□ 0.29
SMAD3-207ENST00000558763 IP6K1Q92551 441 aa16.86■□□□□ 0.29
SMAD3-207ENST00000558763 LTV1Q96GA3 475 aaPredicted RBP16.86■□□□□ 0.29
SMAD3-207ENST00000558763 COL18A1P39060 1754 aa16.85■□□□□ 0.29
SMAD3-207ENST00000558763 PELP1Q8IZL8 1130 aaKnown RBP16.85■□□□□ 0.29
SMAD3-207ENST00000558763 AXIN2Q9Y2T1 843 aa16.85■□□□□ 0.29
SMAD3-207ENST00000558763 KDRP35968 1356 aa16.85■□□□□ 0.29
SMAD3-207ENST00000558763 MYH16Q9H6N6 1097 aa16.84■□□□□ 0.29
SMAD3-207ENST00000558763 FBXO41Q8TF61 875 aa16.84■□□□□ 0.29
SMAD3-207ENST00000558763 CRBNQ96SW2 442 aa16.84■□□□□ 0.29
SMAD3-207ENST00000558763 LMO7Q8WWI1 1683 aa16.83■□□□□ 0.28
SMAD3-207ENST00000558763 TSR2Q969E8 191 aaKnown RBP16.83■□□□□ 0.28
SMAD3-207ENST00000558763 ABCC6O95255 1503 aa16.82■□□□□ 0.28
SMAD3-207ENST00000558763 RARSP54136 660 aaKnown RBP16.82■□□□□ 0.28
SMAD3-207ENST00000558763 FAM83GA6ND36 823 aa16.82■□□□□ 0.28
SMAD3-207ENST00000558763 SULT6B1Q6IMI4 303 aa16.82■□□□□ 0.28
SMAD3-207ENST00000558763 LRP6O75581 1613 aa16.82■□□□□ 0.28
SMAD3-207ENST00000558763 SPATA31A6Q5VVP1 1343 aa16.82■□□□□ 0.28
SMAD3-207ENST00000558763 COL14A1Q05707 1796 aaKnown RBP16.81■□□□□ 0.28
SMAD3-207ENST00000558763 CAMTA1Q9Y6Y1 1673 aa16.81■□□□□ 0.28
SMAD3-207ENST00000558763 TSHZ2Q9NRE2 1034 aa16.81■□□□□ 0.28
SMAD3-207ENST00000558763 IGSF1Q8N6C5 1336 aa16.81■□□□□ 0.28
SMAD3-207ENST00000558763 ANKRD24Q8TF21 1146 aa16.8■□□□□ 0.28
SMAD3-207ENST00000558763 CCDC136Q96JN2 1154 aa16.8■□□□□ 0.28
SMAD3-207ENST00000558763 ERBB3P21860 1342 aa16.8■□□□□ 0.28
SMAD3-207ENST00000558763 PLCH1Q4KWH8 1693 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms