RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 TBC1D2BQ9UPU7 963 aa11.48□□□□□ -0.57
RTF1-204ENST00000558117 CADPSQ9ULU8 1353 aa11.47□□□□□ -0.57
RTF1-204ENST00000558117 SMPD1P17405 629 aa11.47□□□□□ -0.57
RTF1-204ENST00000558117 ERFEQ4G0M1 354 aa11.47□□□□□ -0.57
RTF1-204ENST00000558117 MPNDQ8N594 471 aa11.47□□□□□ -0.57
RTF1-204ENST00000558117 POM121Q96HA1 1249 aa11.47□□□□□ -0.57
RTF1-204ENST00000558117 BAZ1BQ9UIG0 1483 aaKnown RBP11.46□□□□□ -0.57
RTF1-204ENST00000558117 ZBBXA8MT70 800 aa11.46□□□□□ -0.57
RTF1-204ENST00000558117 TRMT44Q8IYL2 757 aaKnown RBP11.46□□□□□ -0.57
RTF1-204ENST00000558117 GDPD2Q9HCC8 539 aa11.46□□□□□ -0.57
RTF1-204ENST00000558117 VASH1Q7L8A9 365 aaPredicted RBP11.45□□□□□ -0.58
RTF1-204ENST00000558117 ADAM32Q8TC27 787 aa11.45□□□□□ -0.58
RTF1-204ENST00000558117 COG6Q9Y2V7 657 aa11.45□□□□□ -0.58
RTF1-204ENST00000558117 ADH1CP00326 375 aa11.44□□□□□ -0.58
RTF1-204ENST00000558117 CDK15Q96Q40 435 aa11.44□□□□□ -0.58
RTF1-204ENST00000558117 CDV3Q9UKY7 258 aaKnown RBP11.44□□□□□ -0.58
RTF1-204ENST00000558117 UBTFP17480 764 aaKnown RBP11.43□□□□□ -0.58
RTF1-204ENST00000558117 ZNF330Q9Y3S2 320 aaPredicted RBP11.43□□□□□ -0.58
RTF1-204ENST00000558117 MAP4K5Q9Y4K4 846 aa11.43□□□□□ -0.58
RTF1-204ENST00000558117 TRAF7Q6Q0C0 670 aa11.42□□□□□ -0.58
RTF1-204ENST00000558117 DZIP3Q86Y13 1208 aaKnown RBP11.42□□□□□ -0.58
RTF1-204ENST00000558117 CLUAP1Q96AJ1 413 aa11.42□□□□□ -0.58
RTF1-204ENST00000558117 OCSTAMPQ9BR26 566 aa11.42□□□□□ -0.58
RTF1-204ENST00000558117 RSF1Q96T23 1441 aaPredicted RBP11.42□□□□□ -0.58
RTF1-204ENST00000558117 FBXO45P0C2W1 286 aa11.41□□□□□ -0.58
RTF1-204ENST00000558117 FSHRP23945 695 aa11.41□□□□□ -0.58
RTF1-204ENST00000558117 ABL2P42684 1182 aa11.41□□□□□ -0.58
RTF1-204ENST00000558117 NR1H3Q13133 447 aa11.41□□□□□ -0.58
RTF1-204ENST00000558117 NNTQ13423 1086 aa11.41□□□□□ -0.58
RTF1-204ENST00000558117 RAD21O60216 631 aa11.4□□□□□ -0.58
RTF1-204ENST00000558117 AVPP01185 164 aa11.4□□□□□ -0.58
RTF1-204ENST00000558117 MYT1Q01538 1121 aa11.4□□□□□ -0.58
RTF1-204ENST00000558117 NR5A1Q13285 461 aa11.4□□□□□ -0.58
RTF1-204ENST00000558117 IRF5Q13568 498 aa11.4□□□□□ -0.58
RTF1-204ENST00000558117 CTC1Q2NKJ3 1217 aa11.4□□□□□ -0.58
RTF1-204ENST00000558117 NBPF20Q3BBV1 942 aa11.4□□□□□ -0.58
RTF1-204ENST00000558117 FBXO41Q8TF61 875 aa11.4□□□□□ -0.58
RTF1-204ENST00000558117 ZNF592Q92610 1267 aa11.4□□□□□ -0.58
RTF1-204ENST00000558117 HPS1Q92902 700 aa11.4□□□□□ -0.58
RTF1-204ENST00000558117 LMTK3Q96Q04 1460 aa11.39□□□□□ -0.59
RTF1-204ENST00000558117 PCDHB9Q9Y5E1 797 aa11.39□□□□□ -0.59
RTF1-204ENST00000558117 CEP164Q9UPV0 1460 aa11.38□□□□□ -0.59
RTF1-204ENST00000558117 AXIN1O15169 862 aa11.38□□□□□ -0.59
RTF1-204ENST00000558117 WWC1Q8IX03 1113 aa11.38□□□□□ -0.59
RTF1-204ENST00000558117 KCTD15Q96SI1 283 aaPredicted RBP11.36□□□□□ -0.59
RTF1-204ENST00000558117 SMARCA4P51532 1647 aa11.35□□□□□ -0.59
RTF1-204ENST00000558117 CCDC116Q8IYX3 515 aa11.35□□□□□ -0.59
RTF1-204ENST00000558117 CRIPAKQ8N1N5 446 aa11.35□□□□□ -0.59
RTF1-204ENST00000558117 ST8SIA5O15466 376 aa11.34□□□□□ -0.59
RTF1-204ENST00000558117 GRM5P41594 1212 aa11.34□□□□□ -0.59
RTF1-204ENST00000558117 SMCPP49901 116 aaPredicted RBP11.34□□□□□ -0.59
RTF1-204ENST00000558117 MCCD1P59942 119 aaPredicted RBP11.34□□□□□ -0.59
RTF1-204ENST00000558117 WASHC4Q2M389 1173 aa11.34□□□□□ -0.59
RTF1-204ENST00000558117 AAASQ9NRG9 546 aa11.34□□□□□ -0.59
RTF1-204ENST00000558117 ZNF608Q9ULD9 1512 aaPredicted RBP11.34□□□□□ -0.59
RTF1-204ENST00000558117 CAPN5O15484 640 aaPredicted RBP11.33□□□□□ -0.6
RTF1-204ENST00000558117 WDR4P57081 412 aaKnown RBP11.33□□□□□ -0.6
RTF1-204ENST00000558117 DHX9Q08211 1270 aaKnown RBP11.33□□□□□ -0.6
RTF1-204ENST00000558117 NR3C2P08235 984 aa11.32□□□□□ -0.6
RTF1-204ENST00000558117 EIF4G2P78344 907 aaKnown RBP eCLIP11.32□□□□□ -0.6
RTF1-204ENST00000558117 VAC14Q08AM6 782 aa11.32□□□□□ -0.6
RTF1-204ENST00000558117 RAB15P59190 212 aa11.31□□□□□ -0.6
RTF1-204ENST00000558117 ILDR2Q71H61 639 aa11.31□□□□□ -0.6
RTF1-204ENST00000558117 EMILIN1Q9Y6C2 1016 aa11.31□□□□□ -0.6
RTF1-204ENST00000558117 FANCD2Q9BXW9 1451 aa11.31□□□□□ -0.6
RTF1-204ENST00000558117 A6NJR5 290 aa11.3□□□□□ -0.6
RTF1-204ENST00000558117 ZIC2O95409 532 aaPredicted RBP11.3□□□□□ -0.6
RTF1-204ENST00000558117 INTS6LQ5JSJ4 861 aaKnown RBP11.3□□□□□ -0.6
RTF1-204ENST00000558117 FNBP4Q8N3X1 1017 aaPredicted RBP11.3□□□□□ -0.6
RTF1-204ENST00000558117 PGPEP1Q9NXJ5 209 aa11.3□□□□□ -0.6
RTF1-204ENST00000558117 URB2Q14146 1524 aaKnown RBP11.3□□□□□ -0.6
RTF1-204ENST00000558117 LCE2BO14633 110 aa11.29□□□□□ -0.6
RTF1-204ENST00000558117 TIMP2P16035 220 aa11.29□□□□□ -0.6
RTF1-204ENST00000558117 ERCC6L2Q5T890 1561 aa11.28□□□□□ -0.6
RTF1-204ENST00000558117 PEG3Q9GZU2 1588 aa11.28□□□□□ -0.6
RTF1-204ENST00000558117 C14orf37Q86TY3 774 aa11.28□□□□□ -0.6
RTF1-204ENST00000558117 PROSER2Q86WR7 435 aaPredicted RBP11.28□□□□□ -0.6
RTF1-204ENST00000558117 SEPT12Q8IYM1 358 aa11.28□□□□□ -0.6
RTF1-204ENST00000558117 TRIM52Q96A61 297 aa11.28□□□□□ -0.6
RTF1-204ENST00000558117 ZMYND15Q9H091 742 aa11.28□□□□□ -0.6
RTF1-204ENST00000558117 PPP1R26Q5T8A7 1209 aaPredicted RBP11.27□□□□□ -0.61
RTF1-204ENST00000558117 ITPKCQ96DU7 683 aa11.27□□□□□ -0.61
RTF1-204ENST00000558117 POM121CA8CG34 1229 aa11.26□□□□□ -0.61
RTF1-204ENST00000558117 ESPNB1AK53 854 aa11.26□□□□□ -0.61
RTF1-204ENST00000558117 RNF20Q5VTR2 975 aa11.26□□□□□ -0.61
RTF1-204ENST00000558117 ZFAND3Q9H8U3 227 aa11.26□□□□□ -0.61
RTF1-204ENST00000558117 GIGYF1O75420 1035 aaPredicted RBP11.24□□□□□ -0.61
RTF1-204ENST00000558117 SOX11P35716 441 aa11.24□□□□□ -0.61
RTF1-204ENST00000558117 CCDC125Q86Z20 511 aa11.24□□□□□ -0.61
RTF1-204ENST00000558117 KLF16Q9BXK1 252 aaPredicted RBP11.24□□□□□ -0.61
RTF1-204ENST00000558117 ATP13A2Q9NQ11 1180 aa11.24□□□□□ -0.61
RTF1-204ENST00000558117 SEMA3FQ13275 785 aa11.23□□□□□ -0.61
RTF1-204ENST00000558117 ERVH48-1M5A8F1 160 aa11.22□□□□□ -0.61
RTF1-204ENST00000558117 TRAK2O60296 914 aa11.22□□□□□ -0.61
RTF1-204ENST00000558117 UPP2O95045 317 aa11.22□□□□□ -0.61
RTF1-204ENST00000558117 BMP1P13497 986 aa11.22□□□□□ -0.61
RTF1-204ENST00000558117 IFT140Q96RY7 1462 aa11.22□□□□□ -0.61
RTF1-204ENST00000558117 DACH1Q9UI36 760 aa11.22□□□□□ -0.61
RTF1-204ENST00000558117 TIMELESSQ9UNS1 1208 aa11.22□□□□□ -0.61
RTF1-204ENST00000558117 CHD1O14646 1710 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms