RNA–Protein interactions for RNA: ENST00000557658.5

VIPAS39-211, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,562 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-211ENST00000557658 ARHGAP31Q2M1Z3 1444 aa14.69□□□□□ -0.06
VIPAS39-211ENST00000557658 CDC45O75419 566 aa14.69□□□□□ -0.06
VIPAS39-211ENST00000557658 NFE2L2Q16236 605 aa14.69□□□□□ -0.06
VIPAS39-211ENST00000557658 FOXD4L1Q9NU39 408 aa14.69□□□□□ -0.06
VIPAS39-211ENST00000557658 GNAI1P63096 354 aa14.68□□□□□ -0.06
VIPAS39-211ENST00000557658 SLC52A1Q9NWF4 448 aa14.68□□□□□ -0.06
VIPAS39-211ENST00000557658 CFAP44Q96MT7 982 aa14.68□□□□□ -0.06
VIPAS39-211ENST00000557658 ABCC4O15439 1325 aa14.68□□□□□ -0.06
VIPAS39-211ENST00000557658 MYO5BQ9ULV0 1848 aa14.67□□□□□ -0.06
VIPAS39-211ENST00000557658 YTHDC2Q9H6S0 1430 aaKnown RBP14.67□□□□□ -0.06
VIPAS39-211ENST00000557658 NPM1P06748 294 aaKnown RBP eCLIP14.67□□□□□ -0.06
VIPAS39-211ENST00000557658 CLEC17AQ6ZS10 378 aa14.67□□□□□ -0.06
VIPAS39-211ENST00000557658 IFT57Q9NWB7 429 aa14.67□□□□□ -0.06
VIPAS39-211ENST00000557658 ERBB4Q15303 1308 aa14.67□□□□□ -0.06
VIPAS39-211ENST00000557658 SSFA2P28290 1259 aa14.66□□□□□ -0.06
VIPAS39-211ENST00000557658 SIRT2Q8IXJ6 389 aa14.66□□□□□ -0.06
VIPAS39-211ENST00000557658 GAS2L2Q8NHY3 880 aa14.66□□□□□ -0.06
VIPAS39-211ENST00000557658 RBM42Q9BTD8 480 aaKnown RBP14.66□□□□□ -0.06
VIPAS39-211ENST00000557658 CDK19Q9BWU1 502 aa14.66□□□□□ -0.06
VIPAS39-211ENST00000557658 GLIPR1L2Q4G1C9 344 aa14.66□□□□□ -0.06
VIPAS39-211ENST00000557658 API5Q9BZZ5 524 aaKnown RBP14.65□□□□□ -0.06
VIPAS39-211ENST00000557658 SENP3Q9H4L4 574 aaPredicted RBP14.65□□□□□ -0.06
VIPAS39-211ENST00000557658 CABP1Q9NZU7 370 aa14.65□□□□□ -0.06
VIPAS39-211ENST00000557658 POLKQ9UBT6 870 aa14.65□□□□□ -0.06
VIPAS39-211ENST00000557658 CCDC173Q0VFZ6 552 aa14.65□□□□□ -0.06
VIPAS39-211ENST00000557658 TSPYL6Q8N831 410 aa14.65□□□□□ -0.06
VIPAS39-211ENST00000557658 IBTKQ9P2D0 1353 aaPredicted RBP14.65□□□□□ -0.06
VIPAS39-211ENST00000557658 RABEP1Q15276 862 aa14.64□□□□□ -0.07
VIPAS39-211ENST00000557658 KLHL40Q2TBA0 621 aa14.64□□□□□ -0.07
VIPAS39-211ENST00000557658 PHACTR3Q96KR7 559 aa14.64□□□□□ -0.07
VIPAS39-211ENST00000557658 THUMPD2Q9BTF0 503 aaKnown RBP14.64□□□□□ -0.07
VIPAS39-211ENST00000557658 MAP2P11137 1827 aaKnown RBP14.64□□□□□ -0.07
VIPAS39-211ENST00000557658 ANP32BQ92688 251 aaKnown RBP14.64□□□□□ -0.07
VIPAS39-211ENST00000557658 ARHGEF40Q8TER5 1519 aa14.63□□□□□ -0.07
VIPAS39-211ENST00000557658 RRP9O43818 475 aaKnown RBP14.63□□□□□ -0.07
VIPAS39-211ENST00000557658 BAG4O95429 457 aaKnown RBP14.63□□□□□ -0.07
VIPAS39-211ENST00000557658 HMOX1P09601 288 aa14.63□□□□□ -0.07
VIPAS39-211ENST00000557658 ZNF853P0CG23 659 aa14.63□□□□□ -0.07
VIPAS39-211ENST00000557658 TWISTNBQ3B726 338 aaPredicted RBP14.63□□□□□ -0.07
VIPAS39-211ENST00000557658 MBIPQ9NS73 344 aa14.63□□□□□ -0.07
VIPAS39-211ENST00000557658 DDX49Q9Y6V7 483 aaKnown RBP14.63□□□□□ -0.07
VIPAS39-211ENST00000557658 TMEM131LA2VDJ0 1609 aa14.63□□□□□ -0.07
VIPAS39-211ENST00000557658 KIF24Q5T7B8 1368 aa14.63□□□□□ -0.07
VIPAS39-211ENST00000557658 ELL2O00472 640 aaPredicted RBP14.63□□□□□ -0.07
VIPAS39-211ENST00000557658 NASPP49321 788 aaPredicted RBP14.63□□□□□ -0.07
VIPAS39-211ENST00000557658 HSP90AA2PQ14568 343 aaPredicted RBP14.63□□□□□ -0.07
VIPAS39-211ENST00000557658 DIP2CQ9Y2E4 1556 aa14.62□□□□□ -0.07
VIPAS39-211ENST00000557658 LMOD3Q0VAK6 560 aa14.62□□□□□ -0.07
VIPAS39-211ENST00000557658 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.62□□□□□ -0.07
VIPAS39-211ENST00000557658 PPP1R9BQ96SB3 815 aa14.62□□□□□ -0.07
VIPAS39-211ENST00000557658 GSPT1P15170 499 aaKnown RBP14.62□□□□□ -0.07
VIPAS39-211ENST00000557658 NUCB2P80303 420 aa14.62□□□□□ -0.07
VIPAS39-211ENST00000557658 PLEKHM2Q8IWE5 1019 aa14.62□□□□□ -0.07
VIPAS39-211ENST00000557658 AK9Q5TCS8 1911 aa14.61□□□□□ -0.07
VIPAS39-211ENST00000557658 ATP7BP35670 1465 aa14.61□□□□□ -0.07
VIPAS39-211ENST00000557658 PREX1Q8TCU6 1659 aa14.6□□□□□ -0.07
VIPAS39-211ENST00000557658 DCTPP1Q9H773 170 aa14.6□□□□□ -0.07
VIPAS39-211ENST00000557658 ALKQ9UM73 1620 aa14.6□□□□□ -0.07
VIPAS39-211ENST00000557658 FBLN1P23142 703 aa14.6□□□□□ -0.07
VIPAS39-211ENST00000557658 TTC22Q5TAA0 569 aa14.6□□□□□ -0.07
VIPAS39-211ENST00000557658 DLG5Q8TDM6 1919 aa14.59□□□□□ -0.07
VIPAS39-211ENST00000557658 RAPGEF3O95398 923 aa14.59□□□□□ -0.07
VIPAS39-211ENST00000557658 NEO1Q92859 1461 aa14.59□□□□□ -0.07
VIPAS39-211ENST00000557658 KNDC1Q76NI1 1749 aa14.59□□□□□ -0.07
VIPAS39-211ENST00000557658 TPM2P07951 284 aa14.59□□□□□ -0.07
VIPAS39-211ENST00000557658 IL13P35225 146 aa14.59□□□□□ -0.07
VIPAS39-211ENST00000557658 INTS3Q68E01 1043 aaKnown RBP14.59□□□□□ -0.07
VIPAS39-211ENST00000557658 C8orf58Q8NAV2 365 aa14.59□□□□□ -0.07
VIPAS39-211ENST00000557658 YEATS2Q9ULM3 1422 aa14.58□□□□□ -0.08
VIPAS39-211ENST00000557658 CDK12Q9NYV4 1490 aaPredicted RBP14.58□□□□□ -0.08
VIPAS39-211ENST00000557658 ZNF445P59923 1031 aa14.58□□□□□ -0.08
VIPAS39-211ENST00000557658 ZSCAN30Q86W11 494 aa14.58□□□□□ -0.08
VIPAS39-211ENST00000557658 USP26Q9BXU7 913 aa14.58□□□□□ -0.08
VIPAS39-211ENST00000557658 MCTP1Q6DN14 999 aa14.57□□□□□ -0.08
VIPAS39-211ENST00000557658 EMILIN1Q9Y6C2 1016 aa14.57□□□□□ -0.08
VIPAS39-211ENST00000557658 CASC1Q6TDU7 716 aa14.57□□□□□ -0.08
VIPAS39-211ENST00000557658 CWC22Q9HCG8 908 aaKnown RBP14.57□□□□□ -0.08
VIPAS39-211ENST00000557658 RIMS2Q9UQ26 1411 aa14.57□□□□□ -0.08
VIPAS39-211ENST00000557658 CYP2E1P05181 493 aaPredicted RBP14.56□□□□□ -0.08
VIPAS39-211ENST00000557658 ANKRD44Q8N8A2 993 aa14.56□□□□□ -0.08
VIPAS39-211ENST00000557658 ST18O60284 1047 aa14.55□□□□□ -0.08
VIPAS39-211ENST00000557658 RPAP2Q8IXW5 612 aaPredicted RBP14.55□□□□□ -0.08
VIPAS39-211ENST00000557658 DLC1Q96QB1 1528 aa14.55□□□□□ -0.08
VIPAS39-211ENST00000557658 NCLP19338 710 aaKnown RBP14.55□□□□□ -0.08
VIPAS39-211ENST00000557658 MSNP26038 577 aaKnown RBP14.55□□□□□ -0.08
VIPAS39-211ENST00000557658 HAP1P54257 671 aaPredicted RBP14.55□□□□□ -0.08
VIPAS39-211ENST00000557658 LMBRD1Q9NUN5 540 aa14.55□□□□□ -0.08
VIPAS39-211ENST00000557658 EDC4Q6P2E9 1401 aaKnown RBP14.54□□□□□ -0.08
VIPAS39-211ENST00000557658 CAVIN1Q6NZI2 390 aaKnown RBP14.54□□□□□ -0.08
VIPAS39-211ENST00000557658 AATKQ6ZMQ8 1374 aa14.54□□□□□ -0.08
VIPAS39-211ENST00000557658 ZSCAN23Q3MJ62 389 aa14.54□□□□□ -0.08
VIPAS39-211ENST00000557658 C16orf71Q8IYS4 520 aaPredicted RBP14.54□□□□□ -0.08
VIPAS39-211ENST00000557658 CPSF1Q10570 1443 aaKnown RBP14.54□□□□□ -0.08
VIPAS39-211ENST00000557658 ATP10DQ9P241 1426 aa14.53□□□□□ -0.08
VIPAS39-211ENST00000557658 HS1BP3Q53T59 392 aa14.53□□□□□ -0.08
VIPAS39-211ENST00000557658 FAM83GA6ND36 823 aa14.52□□□□□ -0.08
VIPAS39-211ENST00000557658 REC8O95072 547 aa14.52□□□□□ -0.08
VIPAS39-211ENST00000557658 SDSP20132 328 aa14.52□□□□□ -0.08
VIPAS39-211ENST00000557658 STAG3Q9UJ98 1225 aa14.52□□□□□ -0.08
VIPAS39-211ENST00000557658 RICTORQ6R327 1708 aa14.52□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms