RNA–Protein interactions for RNA: ENST00000557511.5

PSEN1-223, Transcript of presenilin 1, humanhuman

TSL 5 BASIC

Gene PSEN1, Length 1,230 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-223ENST00000557511 CLCN6P51797 869 aa11.56□□□□□ -0.56
PSEN1-223ENST00000557511 RBM6P78332 1123 aaKnown RBP11.56□□□□□ -0.56
PSEN1-223ENST00000557511 FNBP4Q8N3X1 1017 aaPredicted RBP11.56□□□□□ -0.56
PSEN1-223ENST00000557511 SLC12A5Q9H2X9 1139 aa11.56□□□□□ -0.56
PSEN1-223ENST00000557511 PRDM11Q9NQV5 511 aa11.56□□□□□ -0.56
PSEN1-223ENST00000557511 CCDC9Q9Y3X0 531 aaKnown RBP11.56□□□□□ -0.56
PSEN1-223ENST00000557511 TTC21BQ7Z4L5 1316 aa11.56□□□□□ -0.56
PSEN1-223ENST00000557511 ZBTB7CA1YPR0 619 aa11.54□□□□□ -0.56
PSEN1-223ENST00000557511 HSPA5P11021 654 aaKnown RBP11.54□□□□□ -0.56
PSEN1-223ENST00000557511 UNC5CLQ8IV45 518 aa11.54□□□□□ -0.56
PSEN1-223ENST00000557511 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.54□□□□□ -0.56
PSEN1-223ENST00000557511 KCNH5Q8NCM2 988 aa11.54□□□□□ -0.56
PSEN1-223ENST00000557511 TRPM3Q9HCF6 1732 aaPredicted RBP11.54□□□□□ -0.56
PSEN1-223ENST00000557511 GABBR2O75899 941 aa11.53□□□□□ -0.56
PSEN1-223ENST00000557511 ZC3H6P61129 1189 aaKnown RBP11.53□□□□□ -0.56
PSEN1-223ENST00000557511 ALS2Q96Q42 1657 aa11.52□□□□□ -0.56
PSEN1-223ENST00000557511 CPSF1Q10570 1443 aaKnown RBP11.52□□□□□ -0.56
PSEN1-223ENST00000557511 FAM83GA6ND36 823 aa11.52□□□□□ -0.57
PSEN1-223ENST00000557511 SOCS7O14512 581 aa11.52□□□□□ -0.57
PSEN1-223ENST00000557511 GCP02774 474 aa11.52□□□□□ -0.57
PSEN1-223ENST00000557511 EVA1CP58658 441 aa11.52□□□□□ -0.57
PSEN1-223ENST00000557511 BTG4Q9NY30 223 aa11.52□□□□□ -0.57
PSEN1-223ENST00000557511 EDC4Q6P2E9 1401 aaKnown RBP11.52□□□□□ -0.57
PSEN1-223ENST00000557511 KIAA0232Q92628 1395 aa11.51□□□□□ -0.57
PSEN1-223ENST00000557511 A0A0G2JS52 829 aa11.5□□□□□ -0.57
PSEN1-223ENST00000557511 SOX12O15370 315 aa11.5□□□□□ -0.57
PSEN1-223ENST00000557511 MYT1Q01538 1121 aa11.5□□□□□ -0.57
PSEN1-223ENST00000557511 GJD4Q96KN9 370 aaPredicted RBP11.5□□□□□ -0.57
PSEN1-223ENST00000557511 USP19O94966 1318 aa11.5□□□□□ -0.57
PSEN1-223ENST00000557511 A0A1W2PP64 1363 aa11.5□□□□□ -0.57
PSEN1-223ENST00000557511 ANKRD36BQ8N2N9 1353 aa11.5□□□□□ -0.57
PSEN1-223ENST00000557511 CHRNA2Q15822 529 aa11.49□□□□□ -0.57
PSEN1-223ENST00000557511 VPS72Q15906 364 aa11.49□□□□□ -0.57
PSEN1-223ENST00000557511 COG3Q96JB2 828 aa11.49□□□□□ -0.57
PSEN1-223ENST00000557511 STRN4Q9NRL3 753 aa11.49□□□□□ -0.57
PSEN1-223ENST00000557511 ATRNO75882 1429 aa11.49□□□□□ -0.57
PSEN1-223ENST00000557511 SSH2Q76I76 1423 aa11.49□□□□□ -0.57
PSEN1-223ENST00000557511 SLIT2O94813 1529 aa11.49□□□□□ -0.57
PSEN1-223ENST00000557511 MARF1Q9Y4F3 1742 aaKnown RBP11.49□□□□□ -0.57
PSEN1-223ENST00000557511 PYGBP11216 843 aa11.48□□□□□ -0.57
PSEN1-223ENST00000557511 NME9Q86XW9 330 aa11.48□□□□□ -0.57
PSEN1-223ENST00000557511 BCL9LQ86UU0 1499 aa11.48□□□□□ -0.57
PSEN1-223ENST00000557511 CDK12Q9NYV4 1490 aaPredicted RBP11.48□□□□□ -0.57
PSEN1-223ENST00000557511 CPDO75976 1380 aa11.47□□□□□ -0.57
PSEN1-223ENST00000557511 KIF12Q96FN5 646 aa11.47□□□□□ -0.57
PSEN1-223ENST00000557511 AKAP12Q02952 1782 aa11.46□□□□□ -0.57
PSEN1-223ENST00000557511 COL14A1Q05707 1796 aaKnown RBP11.46□□□□□ -0.57
PSEN1-223ENST00000557511 ABCA3Q99758 1704 aa11.46□□□□□ -0.57
PSEN1-223ENST00000557511 USP31Q70CQ4 1352 aa11.46□□□□□ -0.57
PSEN1-223ENST00000557511 CSB-PGBD3P0DP91 1061 aa11.46□□□□□ -0.57
PSEN1-223ENST00000557511 CD163L1Q9NR16 1453 aa11.45□□□□□ -0.58
PSEN1-223ENST00000557511 MON2Q7Z3U7 1717 aa11.45□□□□□ -0.58
PSEN1-223ENST00000557511 PHRF1Q9P1Y6 1649 aaKnown RBP11.45□□□□□ -0.58
PSEN1-223ENST00000557511 AATKQ6ZMQ8 1374 aa11.44□□□□□ -0.58
PSEN1-223ENST00000557511 NWD2Q9ULI1 1742 aa11.44□□□□□ -0.58
PSEN1-223ENST00000557511 CGNL1Q0VF96 1302 aa11.44□□□□□ -0.58
PSEN1-223ENST00000557511 MAP3K13O43283 966 aa11.44□□□□□ -0.58
PSEN1-223ENST00000557511 NRKQ7Z2Y5 1582 aa11.44□□□□□ -0.58
PSEN1-223ENST00000557511 PIK3C2AO00443 1686 aa11.43□□□□□ -0.58
PSEN1-223ENST00000557511 PLCH1Q4KWH8 1693 aa11.43□□□□□ -0.58
PSEN1-223ENST00000557511 GALR2O43603 387 aaPredicted RBP11.43□□□□□ -0.58
PSEN1-223ENST00000557511 ARHGEF25Q86VW2 580 aa11.43□□□□□ -0.58
PSEN1-223ENST00000557511 USP35Q9P2H5 1018 aa11.43□□□□□ -0.58
PSEN1-223ENST00000557511 PCDHB13Q9Y5F0 798 aa11.43□□□□□ -0.58
PSEN1-223ENST00000557511 SLIT3O75094 1523 aa11.43□□□□□ -0.58
PSEN1-223ENST00000557511 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.43□□□□□ -0.58
PSEN1-223ENST00000557511 RGS12O14924 1447 aa11.43□□□□□ -0.58
PSEN1-223ENST00000557511 SPATA31A5Q5VU36 1347 aa11.42□□□□□ -0.58
PSEN1-223ENST00000557511 SPATA31A7Q8IWB4 1347 aa11.42□□□□□ -0.58
PSEN1-223ENST00000557511 ZEB1P37275 1124 aaPredicted RBP11.42□□□□□ -0.58
PSEN1-223ENST00000557511 AMPHP49418 695 aa11.42□□□□□ -0.58
PSEN1-223ENST00000557511 FAM98CQ17RN3 349 aaKnown RBP11.42□□□□□ -0.58
PSEN1-223ENST00000557511 TOM1L2Q6ZVM7 507 aa11.42□□□□□ -0.58
PSEN1-223ENST00000557511 SEPT12Q8IYM1 358 aa11.42□□□□□ -0.58
PSEN1-223ENST00000557511 DCBLD2Q96PD2 775 aa11.42□□□□□ -0.58
PSEN1-223ENST00000557511 GGNBP2Q9H3C7 697 aa11.42□□□□□ -0.58
PSEN1-223ENST00000557511 CRYBG1Q9Y4K1 1723 aa11.42□□□□□ -0.58
PSEN1-223ENST00000557511 NSD3Q9BZ95 1437 aa11.42□□□□□ -0.58
PSEN1-223ENST00000557511 FYB1O15117 783 aa11.41□□□□□ -0.58
PSEN1-223ENST00000557511 MS4A3Q96HJ5 214 aa11.41□□□□□ -0.58
PSEN1-223ENST00000557511 PANK3Q9H999 370 aa11.41□□□□□ -0.58
PSEN1-223ENST00000557511 THRAP3Q9Y2W1 955 aaKnown RBP11.41□□□□□ -0.58
PSEN1-223ENST00000557511 KNSTRNQ9Y448 316 aa11.41□□□□□ -0.58
PSEN1-223ENST00000557511 SPATA31A1Q5TZJ5 1347 aa11.4□□□□□ -0.58
PSEN1-223ENST00000557511 LARP1Q6PKG0 1096 aaKnown RBP11.4□□□□□ -0.58
PSEN1-223ENST00000557511 TCP11L2Q8N4U5 519 aa11.4□□□□□ -0.58
PSEN1-223ENST00000557511 OVOS2A0A0J9YW53 1432 aa11.39□□□□□ -0.59
PSEN1-223ENST00000557511 PDE3BQ13370 1112 aa11.39□□□□□ -0.59
PSEN1-223ENST00000557511 OVOS2Q6IE36 1432 aa11.39□□□□□ -0.59
PSEN1-223ENST00000557511 KRT27Q7Z3Y8 459 aa11.39□□□□□ -0.59
PSEN1-223ENST00000557511 SGIP1Q9BQI5 828 aa11.39□□□□□ -0.59
PSEN1-223ENST00000557511 KIF7Q2M1P5 1343 aa11.38□□□□□ -0.59
PSEN1-223ENST00000557511 WDR17Q8IZU2 1322 aa11.38□□□□□ -0.59
PSEN1-223ENST00000557511 CRB1P82279 1406 aa11.38□□□□□ -0.59
PSEN1-223ENST00000557511 ONECUT3O60422 494 aaPredicted RBP11.38□□□□□ -0.59
PSEN1-223ENST00000557511 SF3B2Q13435 895 aaKnown RBP11.38□□□□□ -0.59
PSEN1-223ENST00000557511 CARD14Q9BXL6 1004 aa11.38□□□□□ -0.59
PSEN1-223ENST00000557511 NLRP2Q9NX02 1062 aa11.38□□□□□ -0.59
PSEN1-223ENST00000557511 CAMTA1Q9Y6Y1 1673 aa11.38□□□□□ -0.59
PSEN1-223ENST00000557511 COL5A2P05997 1499 aaPredicted RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms