RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, human

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-222	ENST00000556768	TTC21B	Q7Z4L5	1316 aa		10.27	□□□□□ -0.77
SCFD1-222	ENST00000556768	PDE3B	Q13370	1112 aa		10.26	□□□□□ -0.77
SCFD1-222	ENST00000556768	RNF39	Q9H2S5	420 aa		10.26	□□□□□ -0.77
SCFD1-222	ENST00000556768	ZRANB1	Q9UGI0	708 aa		10.26	□□□□□ -0.77
SCFD1-222	ENST00000556768	CPD	O75976	1380 aa		10.26	□□□□□ -0.77
SCFD1-222	ENST00000556768	ITSN1	Q15811	1721 aa		10.26	□□□□□ -0.77
SCFD1-222	ENST00000556768	SPATA31A1	Q5TZJ5	1347 aa		10.26	□□□□□ -0.77
SCFD1-222	ENST00000556768	CDCA8	Q53HL2	280 aa		10.26	□□□□□ -0.77
SCFD1-222	ENST00000556768	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	10.26	□□□□□ -0.77	2e-7	■■■■□ 19.6
SCFD1-222	ENST00000556768	MIER1	Q8N108	512 aa		10.26	□□□□□ -0.77
SCFD1-222	ENST00000556768	THRAP3	Q9Y2W1	955 aa	Known RBP	10.26	□□□□□ -0.77
SCFD1-222	ENST00000556768	TRPM1	Q7Z4N2	1603 aa		10.25	□□□□□ -0.77
SCFD1-222	ENST00000556768	SOX12	O15370	315 aa		10.25	□□□□□ -0.77
SCFD1-222	ENST00000556768	TMF1	P82094	1093 aa		10.25	□□□□□ -0.77
SCFD1-222	ENST00000556768	TCP11L2	Q8N4U5	519 aa		10.25	□□□□□ -0.77
SCFD1-222	ENST00000556768	CCER1	Q8TC90	406 aa	Predicted RBP	10.25	□□□□□ -0.77
SCFD1-222	ENST00000556768	ABCB7	O75027	752 aa		10.24	□□□□□ -0.77
SCFD1-222	ENST00000556768	NBR1	Q14596	966 aa		10.24	□□□□□ -0.77
SCFD1-222	ENST00000556768	LARP1	Q6PKG0	1096 aa	Known RBP	10.24	□□□□□ -0.77
SCFD1-222	ENST00000556768	SLC12A5	Q9H2X9	1139 aa		10.24	□□□□□ -0.77
SCFD1-222	ENST00000556768	TRPM3	Q9HCF6	1732 aa	Predicted RBP	10.24	□□□□□ -0.77
SCFD1-222	ENST00000556768	BLM	P54132	1417 aa	Predicted RBP	10.24	□□□□□ -0.77
SCFD1-222	ENST00000556768	BAG6	P46379	1132 aa		10.23	□□□□□ -0.77
SCFD1-222	ENST00000556768	BARGIN	Q6ZT62	677 aa		10.23	□□□□□ -0.77
SCFD1-222	ENST00000556768	TOM1L2	Q6ZVM7	507 aa		10.23	□□□□□ -0.77
SCFD1-222	ENST00000556768	ALS2	Q96Q42	1657 aa		10.23	□□□□□ -0.77
SCFD1-222	ENST00000556768	AATK	Q6ZMQ8	1374 aa		10.23	□□□□□ -0.77
SCFD1-222	ENST00000556768	CSB-PGBD3	P0DP91	1061 aa		10.23	□□□□□ -0.77
SCFD1-222	ENST00000556768	FAM196A	Q6ZSG2	479 aa		10.23	□□□□□ -0.77
SCFD1-222	ENST00000556768	SSUH2	Q9Y2M2	353 aa		10.23	□□□□□ -0.77
SCFD1-222	ENST00000556768	QRICH2	Q9H0J4	1663 aa		10.23	□□□□□ -0.77
SCFD1-222	ENST00000556768	MARF1	Q9Y4F3	1742 aa	Known RBP	10.22	□□□□□ -0.77
SCFD1-222	ENST00000556768	COL14A1	Q05707	1796 aa	Known RBP	10.22	□□□□□ -0.77
SCFD1-222	ENST00000556768	C11orf95	C9JLR9	678 aa	Predicted RBP	10.22	□□□□□ -0.77
SCFD1-222	ENST00000556768	CPSF1	Q10570	1443 aa	Known RBP	10.22	□□□□□ -0.77
SCFD1-222	ENST00000556768	GLI3	P10071	1580 aa		10.22	□□□□□ -0.77
SCFD1-222	ENST00000556768	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	10.22	□□□□□ -0.77
SCFD1-222	ENST00000556768	NINL	Q9Y2I6	1382 aa		10.22	□□□□□ -0.77
SCFD1-222	ENST00000556768	SSH2	Q76I76	1423 aa		10.21	□□□□□ -0.77
SCFD1-222	ENST00000556768	ARHGEF25	Q86VW2	580 aa		10.21	□□□□□ -0.77
SCFD1-222	ENST00000556768	TESK2	Q96S53	571 aa		10.21	□□□□□ -0.77
SCFD1-222	ENST00000556768	NWD2	Q9ULI1	1742 aa		10.21	□□□□□ -0.77
SCFD1-222	ENST00000556768	CIZ1	Q9ULV3	898 aa	Predicted RBP	10.21	□□□□□ -0.77
SCFD1-222	ENST00000556768	SPDYE2B	A6NHP3	402 aa		10.2	□□□□□ -0.78
SCFD1-222	ENST00000556768	SPDYE6	P0CI01	402 aa		10.2	□□□□□ -0.78
SCFD1-222	ENST00000556768	SPDYE2	Q495Y8	402 aa		10.2	□□□□□ -0.78
SCFD1-222	ENST00000556768	FAM182B	Q5T319	152 aa		10.2	□□□□□ -0.78
SCFD1-222	ENST00000556768	DEFB132	Q7Z7B7	95 aa		10.2	□□□□□ -0.78
SCFD1-222	ENST00000556768	CDCA7	Q9BWT1	371 aa	Predicted RBP	10.2	□□□□□ -0.78
SCFD1-222	ENST00000556768	USP47	Q96K76	1375 aa		10.2	□□□□□ -0.78
SCFD1-222	ENST00000556768	TOPAZ1	Q8N9V7	1692 aa		10.19	□□□□□ -0.78
SCFD1-222	ENST00000556768	NME9	Q86XW9	330 aa		10.19	□□□□□ -0.78
SCFD1-222	ENST00000556768	HS6ST3	Q8IZP7	471 aa		10.19	□□□□□ -0.78
SCFD1-222	ENST00000556768	COG3	Q96JB2	828 aa		10.19	□□□□□ -0.78
SCFD1-222	ENST00000556768	DDB1	Q16531	1140 aa		10.19	□□□□□ -0.78
SCFD1-222	ENST00000556768	AXIN2	Q9Y2T1	843 aa		10.19	□□□□□ -0.78
SCFD1-222	ENST00000556768	WDR17	Q8IZU2	1322 aa		10.18	□□□□□ -0.78
SCFD1-222	ENST00000556768	PLCH1	Q4KWH8	1693 aa		10.18	□□□□□ -0.78
SCFD1-222	ENST00000556768	CRB1	P82279	1406 aa		10.18	□□□□□ -0.78
SCFD1-222	ENST00000556768	TRIM37	O94972	964 aa		10.18	□□□□□ -0.78
SCFD1-222	ENST00000556768	EDC4	Q6P2E9	1401 aa	Known RBP	10.18	□□□□□ -0.78
SCFD1-222	ENST00000556768	CAMTA1	Q9Y6Y1	1673 aa		10.17	□□□□□ -0.78
SCFD1-222	ENST00000556768	CARD10	Q9BWT7	1032 aa		10.17	□□□□□ -0.78
SCFD1-222	ENST00000556768	USP31	Q70CQ4	1352 aa		10.17	□□□□□ -0.78
SCFD1-222	ENST00000556768	COL5A2	P05997	1499 aa	Predicted RBP	10.17	□□□□□ -0.78
SCFD1-222	ENST00000556768	ABCA3	Q99758	1704 aa		10.17	□□□□□ -0.78
SCFD1-222	ENST00000556768	EXOC5	O00471	708 aa		10.17	□□□□□ -0.78
SCFD1-222	ENST00000556768	APBA3	O96018	575 aa		10.17	□□□□□ -0.78
SCFD1-222	ENST00000556768	C1QBP	Q07021	282 aa	Known RBP	10.17	□□□□□ -0.78
SCFD1-222	ENST00000556768		A0A1W2PP64	1363 aa		10.16	□□□□□ -0.78
SCFD1-222	ENST00000556768	EN1	Q05925	392 aa	Predicted RBP	10.16	□□□□□ -0.78
SCFD1-222	ENST00000556768	NLRP2	Q9NX02	1062 aa		10.16	□□□□□ -0.78
SCFD1-222	ENST00000556768	ZBTB47	Q9UFB7	747 aa	Predicted RBP	10.16	□□□□□ -0.78
SCFD1-222	ENST00000556768	NRK	Q7Z2Y5	1582 aa		10.15	□□□□□ -0.78
SCFD1-222	ENST00000556768	SLIT3	O75094	1523 aa		10.15	□□□□□ -0.79
SCFD1-222	ENST00000556768	AMPH	P49418	695 aa		10.14	□□□□□ -0.79
SCFD1-222	ENST00000556768	EIF4G2	P78344	907 aa	Known RBP eCLIP	10.14	□□□□□ -0.79
SCFD1-222	ENST00000556768	PHRF1	Q9P1Y6	1649 aa	Known RBP	10.14	□□□□□ -0.79
SCFD1-222	ENST00000556768	ANKRD36B	Q8N2N9	1353 aa		10.14	□□□□□ -0.79
SCFD1-222	ENST00000556768	CCDC7	Q96M83	1385 aa		10.14	□□□□□ -0.79
SCFD1-222	ENST00000556768	POTEH	Q6S545	545 aa		10.14	□□□□□ -0.79
SCFD1-222	ENST00000556768	POLR3GL	Q9BT43	218 aa		10.14	□□□□□ -0.79
SCFD1-222	ENST00000556768	NRAP	Q86VF7	1730 aa		10.13	□□□□□ -0.79
SCFD1-222	ENST00000556768	ANKRD24	Q8TF21	1146 aa		10.13	□□□□□ -0.79
SCFD1-222	ENST00000556768	IP6K1	Q92551	441 aa		10.13	□□□□□ -0.79
SCFD1-222	ENST00000556768	CD163L1	Q9NR16	1453 aa		10.13	□□□□□ -0.79
SCFD1-222	ENST00000556768	ERBB3	P21860	1342 aa		10.12	□□□□□ -0.79
SCFD1-222	ENST00000556768	NBPF14	Q5TI25	921 aa		10.12	□□□□□ -0.79
SCFD1-222	ENST00000556768	FYB1	O15117	783 aa		10.12	□□□□□ -0.79
SCFD1-222	ENST00000556768	IL2RB	P14784	551 aa		10.12	□□□□□ -0.79
SCFD1-222	ENST00000556768	EZH2	Q15910	746 aa	Known RBP	10.12	□□□□□ -0.79
SCFD1-222	ENST00000556768	LTV1	Q96GA3	475 aa	Predicted RBP	10.12	□□□□□ -0.79
SCFD1-222	ENST00000556768	GGNBP2	Q9H3C7	697 aa		10.12	□□□□□ -0.79
SCFD1-222	ENST00000556768	CRYBG1	Q9Y4K1	1723 aa		10.12	□□□□□ -0.79
SCFD1-222	ENST00000556768	PARD3	Q8TEW0	1356 aa		10.11	□□□□□ -0.79
SCFD1-222	ENST00000556768	BCL11B	Q9C0K0	894 aa	Predicted RBP	10.11	□□□□□ -0.79
SCFD1-222	ENST00000556768	OVOS2	A0A0G2JMS6	1433 aa		10.11	□□□□□ -0.79
SCFD1-222	ENST00000556768	OVOS2	A0A0J9YW53	1432 aa		10.11	□□□□□ -0.79
SCFD1-222	ENST00000556768	OVOS2	Q6IE36	1432 aa		10.11	□□□□□ -0.79
SCFD1-222	ENST00000556768	PIK3C2A	O00443	1686 aa		10.1	□□□□□ -0.79

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