RNA–Protein interactions for RNA: ENST00000555002.5

SYNE2-216, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 11,532 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-216ENST00000555002 APAF1O14727 1248 aa8.12□□□□□ -1.11
SYNE2-216ENST00000555002 GRM1Q13255 1194 aa8.12□□□□□ -1.11
SYNE2-216ENST00000555002 PABPN1LA6NDY0 278 aaKnown RBP8.12□□□□□ -1.11
SYNE2-216ENST00000555002 NACAP1Q9BZK3 213 aa8.12□□□□□ -1.11
SYNE2-216ENST00000555002 RAB3GAP2Q9H2M9 1393 aa8.12□□□□□ -1.11
SYNE2-216ENST00000555002 TICAM2Q86XR7 235 aa8.11□□□□□ -1.11
SYNE2-216ENST00000555002 ERICH4A6NGS2 130 aa8.11□□□□□ -1.11
SYNE2-216ENST00000555002 LRRCC1Q9C099 1032 aa8.11□□□□□ -1.11
SYNE2-216ENST00000555002 CFAP45Q9UL16 551 aa8.11□□□□□ -1.11
SYNE2-216ENST00000555002 TNIP1Q15025 636 aa8.11□□□□□ -1.11
SYNE2-216ENST00000555002 IQCEQ6IPM2 695 aa8.11□□□□□ -1.11
SYNE2-216ENST00000555002 RAI14Q9P0K7 980 aa8.11□□□□□ -1.11
SYNE2-216ENST00000555002 DNA2P51530 1060 aa8.11□□□□□ -1.11
SYNE2-216ENST00000555002 RBM10P98175 930 aaKnown RBP8.11□□□□□ -1.11
SYNE2-216ENST00000555002 PANK1Q8TE04 598 aa8.11□□□□□ -1.11
SYNE2-216ENST00000555002 BMP2KQ9NSY1 1161 aaPredicted RBP8.11□□□□□ -1.11
SYNE2-216ENST00000555002 CCDC158Q5M9N0 1113 aa8.11□□□□□ -1.11
SYNE2-216ENST00000555002 TNMDQ9H2S6 317 aa8.11□□□□□ -1.11
SYNE2-216ENST00000555002 CCDC66A2RUB6 948 aa8.11□□□□□ -1.11
SYNE2-216ENST00000555002 SURF6O75683 361 aaKnown RBP8.11□□□□□ -1.11
SYNE2-216ENST00000555002 PODXL2Q9NZ53 605 aa8.11□□□□□ -1.11
SYNE2-216ENST00000555002 GSTTP1A0A1W2PQM5 241 aa8.11□□□□□ -1.11
SYNE2-216ENST00000555002 WDHD1O75717 1129 aaPredicted RBP8.11□□□□□ -1.11
SYNE2-216ENST00000555002 CBX1P83916 185 aa8.11□□□□□ -1.11
SYNE2-216ENST00000555002 JMYQ8N9B5 988 aa8.11□□□□□ -1.11
SYNE2-216ENST00000555002 SMC1AQ14683 1233 aaKnown RBP8.1□□□□□ -1.11
SYNE2-216ENST00000555002 C1orf115Q9H7X2 142 aa8.1□□□□□ -1.11
SYNE2-216ENST00000555002 ZNF219Q9P2Y4 722 aaPredicted RBP8.1□□□□□ -1.11
SYNE2-216ENST00000555002 HOOK3Q86VS8 718 aa8.1□□□□□ -1.11
SYNE2-216ENST00000555002 NOL7Q9UMY1 257 aaKnown RBP8.1□□□□□ -1.11
SYNE2-216ENST00000555002 EIF5P55010 431 aaKnown RBP8.1□□□□□ -1.11
SYNE2-216ENST00000555002 FERMT2Q96AC1 680 aa8.1□□□□□ -1.11
SYNE2-216ENST00000555002 SMG6Q86US8 1419 aaKnown RBP8.1□□□□□ -1.11
SYNE2-216ENST00000555002 UBAC1Q9BSL1 405 aa8.1□□□□□ -1.11
SYNE2-216ENST00000555002 TSHZ2Q9NRE2 1034 aa8.1□□□□□ -1.11
SYNE2-216ENST00000555002 CCDC150Q8NCX0 1101 aa8.1□□□□□ -1.11
SYNE2-216ENST00000555002 ST20-MTHFSA0A0A6YYL1 179 aa8.1□□□□□ -1.11
SYNE2-216ENST00000555002 ABTB2Q8N961 1025 aa8.1□□□□□ -1.11
SYNE2-216ENST00000555002 CCDC85AQ96PX6 553 aaPredicted RBP8.1□□□□□ -1.11
SYNE2-216ENST00000555002 CCDC102AQ96A19 550 aa8.1□□□□□ -1.11
SYNE2-216ENST00000555002 MAP2K1Q02750 393 aaPredicted RBP8.09□□□□□ -1.11
SYNE2-216ENST00000555002 FKBP4Q02790 459 aaKnown RBP eCLIP8.09□□□□□ -1.11
SYNE2-216ENST00000555002 SEC63Q9UGP8 760 aaKnown RBP8.09□□□□□ -1.11
SYNE2-216ENST00000555002 CCDC178Q5BJE1 867 aa8.09□□□□□ -1.11
SYNE2-216ENST00000555002 GPRASP1Q5JY77 1395 aa8.09□□□□□ -1.11
SYNE2-216ENST00000555002 SPTY2D1Q68D10 685 aaPredicted RBP8.09□□□□□ -1.11
SYNE2-216ENST00000555002 CYB5RLQ6IPT4 315 aa8.09□□□□□ -1.11
SYNE2-216ENST00000555002 DDX54Q8TDD1 881 aaKnown RBP8.09□□□□□ -1.11
SYNE2-216ENST00000555002 CABP2Q9NPB3 220 aa8.09□□□□□ -1.11
SYNE2-216ENST00000555002 VGFO15240 615 aaPredicted RBP8.09□□□□□ -1.11
SYNE2-216ENST00000555002 MYL6BP14649 208 aa8.09□□□□□ -1.11
SYNE2-216ENST00000555002 CABP4P57796 275 aa8.09□□□□□ -1.11
SYNE2-216ENST00000555002 CCDC96Q2M329 555 aa8.09□□□□□ -1.11
SYNE2-216ENST00000555002 L3MBTL2Q969R5 705 aa8.09□□□□□ -1.11
SYNE2-216ENST00000555002 ZMYND15Q9H091 742 aa8.09□□□□□ -1.11
SYNE2-216ENST00000555002 EIF3JO75822 258 aaKnown RBP8.09□□□□□ -1.11
SYNE2-216ENST00000555002 DHX8Q14562 1220 aaKnown RBP8.09□□□□□ -1.11
SYNE2-216ENST00000555002 ESCO1Q5FWF5 840 aa8.09□□□□□ -1.11
SYNE2-216ENST00000555002 ARL1P40616 181 aaPredicted RBP8.08□□□□□ -1.12
SYNE2-216ENST00000555002 CCDC57Q2TAC2 916 aa8.08□□□□□ -1.12
SYNE2-216ENST00000555002 CRACR2BQ8N4Y2 399 aaPredicted RBP8.08□□□□□ -1.12
SYNE2-216ENST00000555002 DACH1Q9UI36 760 aa8.08□□□□□ -1.12
SYNE2-216ENST00000555002 LETM1O95202 739 aaPredicted RBP8.08□□□□□ -1.12
SYNE2-216ENST00000555002 NLRP6P59044 892 aa8.08□□□□□ -1.12
SYNE2-216ENST00000555002 GNAI1P63096 354 aa8.08□□□□□ -1.12
SYNE2-216ENST00000555002 CETN2P41208 172 aa8.08□□□□□ -1.12
SYNE2-216ENST00000555002 PUF60Q9UHX1 559 aaKnown RBP8.08□□□□□ -1.12
SYNE2-216ENST00000555002 SSX2IPQ9Y2D8 614 aa8.08□□□□□ -1.12
SYNE2-216ENST00000555002 RAD54L2Q9Y4B4 1467 aa8.08□□□□□ -1.12
SYNE2-216ENST00000555002 PDCP20941 246 aa8.08□□□□□ -1.12
SYNE2-216ENST00000555002 CCDC18Q5T9S5 1454 aa8.08□□□□□ -1.12
SYNE2-216ENST00000555002 TMCO5BA8MYB1 307 aa8.08□□□□□ -1.12
SYNE2-216ENST00000555002 HIP1O00291 1037 aa8.08□□□□□ -1.12
SYNE2-216ENST00000555002 ERLIN1O75477 346 aa8.08□□□□□ -1.12
SYNE2-216ENST00000555002 ZNF354CQ86Y25 554 aa8.08□□□□□ -1.12
SYNE2-216ENST00000555002 TOM1L2Q6ZVM7 507 aa8.08□□□□□ -1.12
SYNE2-216ENST00000555002 IFFO1Q0D2I5 559 aa8.07□□□□□ -1.12
SYNE2-216ENST00000555002 PPP1R12BO60237 982 aaPredicted RBP8.07□□□□□ -1.12
SYNE2-216ENST00000555002 PRPF40AO75400 957 aaKnown RBP8.07□□□□□ -1.12
SYNE2-216ENST00000555002 RBM25P49756 843 aaKnown RBP8.07□□□□□ -1.12
SYNE2-216ENST00000555002 NEK4P51957 841 aa8.07□□□□□ -1.12
SYNE2-216ENST00000555002 APBB1IPQ7Z5R6 666 aaPredicted RBP8.07□□□□□ -1.12
SYNE2-216ENST00000555002 MIA2Q96PC5 1412 aa8.07□□□□□ -1.12
SYNE2-216ENST00000555002 FMN1Q68DA7 1419 aa8.07□□□□□ -1.12
SYNE2-216ENST00000555002 CTNNA2P26232 953 aa8.07□□□□□ -1.12
SYNE2-216ENST00000555002 OTUD6BQ8N6M0 293 aa8.07□□□□□ -1.12
SYNE2-216ENST00000555002 USP47Q96K76 1375 aa8.07□□□□□ -1.12
SYNE2-216ENST00000555002 CBFA2T2O43439 604 aa8.07□□□□□ -1.12
SYNE2-216ENST00000555002 ZWINTO95229 277 aa8.07□□□□□ -1.12
SYNE2-216ENST00000555002 CEP57L1Q8IYX8 460 aa8.07□□□□□ -1.12
SYNE2-216ENST00000555002 USP8P40818 1118 aa8.07□□□□□ -1.12
SYNE2-216ENST00000555002 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.07□□□□□ -1.12
SYNE2-216ENST00000555002 POLR3DP05423 398 aaPredicted RBP8.06□□□□□ -1.12
SYNE2-216ENST00000555002 TRMT1LQ7Z2T5 733 aaKnown RBP8.06□□□□□ -1.12
SYNE2-216ENST00000555002 RUNDC1Q96C34 613 aa8.06□□□□□ -1.12
SYNE2-216ENST00000555002 KANK4Q5T7N3 995 aaPredicted RBP8.06□□□□□ -1.12
SYNE2-216ENST00000555002 RNF187Q5TA31 235 aaPredicted RBP8.06□□□□□ -1.12
SYNE2-216ENST00000555002 LARP1Q6PKG0 1096 aaKnown RBP8.06□□□□□ -1.12
SYNE2-216ENST00000555002 PPM1EQ8WY54 764 aa8.06□□□□□ -1.12
SYNE2-216ENST00000555002 VTI1AQ96AJ9 217 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms