RNA–Protein interactions for RNA: ENST00000553889.5

PRKCH-209, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 553 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-209	ENST00000553889	SSH1	Q8WYL5	1049 aa		11.82	□□□□□ -0.52
PRKCH-209	ENST00000553889	RWDD1	Q9H446	243 aa	Predicted RBP	11.82	□□□□□ -0.52
PRKCH-209	ENST00000553889	ZBTB47	Q9UFB7	747 aa	Predicted RBP	11.82	□□□□□ -0.52
PRKCH-209	ENST00000553889	DDX19B	Q9UMR2	479 aa		11.82	□□□□□ -0.52
PRKCH-209	ENST00000553889	EMILIN1	Q9Y6C2	1016 aa		11.82	□□□□□ -0.52
PRKCH-209	ENST00000553889	RGPD1	P0DJD0	1748 aa		11.81	□□□□□ -0.52
PRKCH-209	ENST00000553889	CHMP4B	Q9H444	224 aa	Known RBP	11.81	□□□□□ -0.52
PRKCH-209	ENST00000553889	ACE	P12821	1306 aa		11.81	□□□□□ -0.52
PRKCH-209	ENST00000553889	TRIM27	P14373	513 aa		11.8	□□□□□ -0.52
PRKCH-209	ENST00000553889	FRAT1	Q92837	279 aa	Predicted RBP	11.8	□□□□□ -0.52
PRKCH-209	ENST00000553889	SMC4	Q9NTJ3	1288 aa		11.8	□□□□□ -0.52
PRKCH-209	ENST00000553889	AMOTL2	Q9Y2J4	779 aa		11.8	□□□□□ -0.52
PRKCH-209	ENST00000553889	PCDHB15	Q9Y5E8	787 aa		11.8	□□□□□ -0.52
PRKCH-209	ENST00000553889	VIRMA	Q69YN4	1812 aa	Known RBP	11.8	□□□□□ -0.52
PRKCH-209	ENST00000553889	HAP1	P54257	671 aa	Predicted RBP	11.79	□□□□□ -0.52
PRKCH-209	ENST00000553889	TSR2	Q969E8	191 aa	Known RBP	11.79	□□□□□ -0.52
PRKCH-209	ENST00000553889	PHACTR3	Q96KR7	559 aa		11.79	□□□□□ -0.52
PRKCH-209	ENST00000553889	CFAP44	Q96MT7	982 aa		11.79	□□□□□ -0.52
PRKCH-209	ENST00000553889	VAMP4	O75379	141 aa		11.78	□□□□□ -0.52
PRKCH-209	ENST00000553889	SMC5	Q8IY18	1101 aa		11.78	□□□□□ -0.52
PRKCH-209	ENST00000553889	ZBTB40	Q9NUA8	1239 aa		11.78	□□□□□ -0.52
PRKCH-209	ENST00000553889	ARHGEF10	O15013	1369 aa		11.78	□□□□□ -0.52
PRKCH-209	ENST00000553889	KDR	P35968	1356 aa		11.78	□□□□□ -0.52
PRKCH-209	ENST00000553889	ZNF142	P52746	1687 aa	Predicted RBP	11.78	□□□□□ -0.52
PRKCH-209	ENST00000553889	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	11.77	□□□□□ -0.53
PRKCH-209	ENST00000553889	PAK3	O75914	559 aa	Predicted RBP	11.77	□□□□□ -0.53
PRKCH-209	ENST00000553889	FTSJ3	Q8IY81	847 aa	Known RBP	11.77	□□□□□ -0.53
PRKCH-209	ENST00000553889	KIAA0232	Q92628	1395 aa		11.77	□□□□□ -0.53
PRKCH-209	ENST00000553889	CEBPA	P49715	358 aa	Predicted RBP	11.76	□□□□□ -0.53
PRKCH-209	ENST00000553889	EIF4A2	Q14240	407 aa	Known RBP	11.76	□□□□□ -0.53
PRKCH-209	ENST00000553889	SENP3	Q9H4L4	574 aa	Predicted RBP	11.76	□□□□□ -0.53
PRKCH-209	ENST00000553889	ZRANB1	Q9UGI0	708 aa		11.76	□□□□□ -0.53
PRKCH-209	ENST00000553889	NCKAP5L	Q9HCH0	1330 aa		11.76	□□□□□ -0.53
PRKCH-209	ENST00000553889	SBNO1	A3KN83	1393 aa		11.76	□□□□□ -0.53
PRKCH-209	ENST00000553889	DLG5	Q8TDM6	1919 aa		11.76	□□□□□ -0.53
PRKCH-209	ENST00000553889	FMN2	Q9NZ56	1722 aa		11.75	□□□□□ -0.53
PRKCH-209	ENST00000553889	MRPL50	Q8N5N7	158 aa	Known RBP	11.75	□□□□□ -0.53
PRKCH-209	ENST00000553889	USP35	Q9P2H5	1018 aa		11.75	□□□□□ -0.53
PRKCH-209	ENST00000553889	NOB1	Q9ULX3	412 aa	Known RBP	11.75	□□□□□ -0.53
PRKCH-209	ENST00000553889	TNN	Q9UQP3	1299 aa		11.75	□□□□□ -0.53
PRKCH-209	ENST00000553889	SETD1B	Q9UPS6	1966 aa	Known RBP	11.75	□□□□□ -0.53
PRKCH-209	ENST00000553889	PEAK1	Q9H792	1746 aa		11.74	□□□□□ -0.53
PRKCH-209	ENST00000553889	HTATSF1	O43719	755 aa	Known RBP	11.74	□□□□□ -0.53
PRKCH-209	ENST00000553889	FBLN1	P23142	703 aa		11.74	□□□□□ -0.53
PRKCH-209	ENST00000553889	SLC26A8	Q96RN1	970 aa		11.74	□□□□□ -0.53
PRKCH-209	ENST00000553889	BCL2L13	Q9BXK5	485 aa		11.74	□□□□□ -0.53
PRKCH-209	ENST00000553889	PDZRN3	Q9UPQ7	1066 aa		11.74	□□□□□ -0.53
PRKCH-209	ENST00000553889	ABCC4	O15439	1325 aa		11.74	□□□□□ -0.53
PRKCH-209	ENST00000553889	FLT4	P35916	1363 aa		11.74	□□□□□ -0.53
PRKCH-209	ENST00000553889	CHL1	O00533	1208 aa		11.73	□□□□□ -0.53
PRKCH-209	ENST00000553889	PPM1G	O15355	546 aa	Predicted RBP	11.73	□□□□□ -0.53
PRKCH-209	ENST00000553889	USP19	O94966	1318 aa		11.73	□□□□□ -0.53
PRKCH-209	ENST00000553889	HMOX1	P09601	288 aa		11.73	□□□□□ -0.53
PRKCH-209	ENST00000553889	RRS1	Q15050	365 aa	Known RBP	11.73	□□□□□ -0.53
PRKCH-209	ENST00000553889	MBIP	Q9NS73	344 aa		11.73	□□□□□ -0.53
PRKCH-209	ENST00000553889	CHD2	O14647	1828 aa	Known RBP	11.72	□□□□□ -0.53
PRKCH-209	ENST00000553889	SOS1	Q07889	1333 aa	Predicted RBP	11.72	□□□□□ -0.53
PRKCH-209	ENST00000553889	SKAP1	Q86WV1	359 aa		11.72	□□□□□ -0.53
PRKCH-209	ENST00000553889	API5	Q9BZZ5	524 aa	Known RBP	11.72	□□□□□ -0.53
PRKCH-209	ENST00000553889	ADAMTSL3	P82987	1691 aa		11.71	□□□□□ -0.53
PRKCH-209	ENST00000553889	RTL1	A6NKG5	1358 aa		11.71	□□□□□ -0.53
PRKCH-209	ENST00000553889	IGSF1	Q8N6C5	1336 aa		11.71	□□□□□ -0.53
PRKCH-209	ENST00000553889	ZBTB7B	O15156	539 aa	Predicted RBP	11.71	□□□□□ -0.53
PRKCH-209	ENST00000553889	RGS3	P49796	1198 aa		11.71	□□□□□ -0.53
PRKCH-209	ENST00000553889	TMEM57	Q8N5G2	664 aa		11.71	□□□□□ -0.53
PRKCH-209	ENST00000553889	BABAM1	Q9NWV8	329 aa		11.71	□□□□□ -0.53
PRKCH-209	ENST00000553889	PIK3C2A	O00443	1686 aa		11.71	□□□□□ -0.54
PRKCH-209	ENST00000553889	CRB1	P82279	1406 aa		11.7	□□□□□ -0.54
PRKCH-209	ENST00000553889	MAP3K19	Q56UN5	1328 aa		11.7	□□□□□ -0.54
PRKCH-209	ENST00000553889	TWISTNB	Q3B726	338 aa	Predicted RBP	11.69	□□□□□ -0.54
PRKCH-209	ENST00000553889	ANKLE2	Q86XL3	938 aa		11.69	□□□□□ -0.54
PRKCH-209	ENST00000553889	ITPRIP	Q8IWB1	547 aa		11.69	□□□□□ -0.54
PRKCH-209	ENST00000553889	MARF1	Q9Y4F3	1742 aa	Known RBP	11.69	□□□□□ -0.54
PRKCH-209	ENST00000553889	KCNA6	P17658	529 aa		11.68	□□□□□ -0.54
PRKCH-209	ENST00000553889	NUCB1	Q02818	461 aa		11.68	□□□□□ -0.54
PRKCH-209	ENST00000553889	HSP90AB2P	Q58FF8	381 aa		11.68	□□□□□ -0.54
PRKCH-209	ENST00000553889	INTS3	Q68E01	1043 aa	Known RBP	11.68	□□□□□ -0.54
PRKCH-209	ENST00000553889	SULT6B1	Q6IMI4	303 aa		11.68	□□□□□ -0.54
PRKCH-209	ENST00000553889	GCC1	Q96CN9	775 aa		11.68	□□□□□ -0.54
PRKCH-209	ENST00000553889	ADGRL3	Q9HAR2	1447 aa		11.68	□□□□□ -0.54
PRKCH-209	ENST00000553889	PHRF1	Q9P1Y6	1649 aa	Known RBP	11.68	□□□□□ -0.54
PRKCH-209	ENST00000553889	PTPRC	P08575	1304 aa		11.67	□□□□□ -0.54
PRKCH-209	ENST00000553889	NPM2	Q86SE8	214 aa	Known RBP	11.67	□□□□□ -0.54
PRKCH-209	ENST00000553889	TSPYL6	Q8N831	410 aa		11.67	□□□□□ -0.54
PRKCH-209	ENST00000553889	C8orf58	Q8NAV2	365 aa		11.67	□□□□□ -0.54
PRKCH-209	ENST00000553889	NGDN	Q8NEJ9	315 aa	Known RBP	11.67	□□□□□ -0.54
PRKCH-209	ENST00000553889	LRRC37A3	O60309	1634 aa		11.67	□□□□□ -0.54
PRKCH-209	ENST00000553889	NWD1	Q149M9	1564 aa		11.67	□□□□□ -0.54
PRKCH-209	ENST00000553889	AEBP1	Q8IUX7	1158 aa		11.66	□□□□□ -0.54
PRKCH-209	ENST00000553889	GAS2L2	Q8NHY3	880 aa		11.66	□□□□□ -0.54
PRKCH-209	ENST00000553889	TBC1D32	Q96NH3	1257 aa		11.66	□□□□□ -0.54
PRKCH-209	ENST00000553889	MST1R	Q04912	1400 aa		11.66	□□□□□ -0.54
PRKCH-209	ENST00000553889	RGPD8	O14715	1765 aa	Predicted RBP	11.66	□□□□□ -0.54
PRKCH-209	ENST00000553889	THUMPD2	Q9BTF0	503 aa	Known RBP	11.65	□□□□□ -0.54
PRKCH-209	ENST00000553889	RGS12	O14924	1447 aa		11.65	□□□□□ -0.54
PRKCH-209	ENST00000553889	EIF5B	O60841	1220 aa	Known RBP	11.64	□□□□□ -0.55
PRKCH-209	ENST00000553889	EYA1	Q99502	592 aa		11.64	□□□□□ -0.55
PRKCH-209	ENST00000553889	LMTK3	Q96Q04	1460 aa		11.63	□□□□□ -0.55
PRKCH-209	ENST00000553889	NCAPD2	Q15021	1401 aa		11.63	□□□□□ -0.55
PRKCH-209	ENST00000553889	UPF2	Q9HAU5	1272 aa	Known RBP	11.63	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms