RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 DOK7Q18PE1 504 aa11.25□□□□□ -0.61
NEK3-201ENST00000550331 CFAP70Q5T0N1 1121 aa11.25□□□□□ -0.61
NEK3-201ENST00000550331 SPATA31A3Q5VYP0 1347 aa11.25□□□□□ -0.61
NEK3-201ENST00000550331 USP32Q8NFA0 1604 aa11.24□□□□□ -0.61
NEK3-201ENST00000550331 VARS2Q5ST30 1063 aaKnown RBP11.23□□□□□ -0.61
NEK3-201ENST00000550331 SEPT12Q8IYM1 358 aa11.23□□□□□ -0.61
NEK3-201ENST00000550331 PHF8Q9UPP1 1060 aa11.23□□□□□ -0.61
NEK3-201ENST00000550331 TNS3Q68CZ2 1445 aa11.23□□□□□ -0.61
NEK3-201ENST00000550331 PLCH1Q4KWH8 1693 aa11.23□□□□□ -0.61
NEK3-201ENST00000550331 SBNO1A3KN83 1393 aa11.22□□□□□ -0.61
NEK3-201ENST00000550331 PSDA5PKW4 1024 aaPredicted RBP11.22□□□□□ -0.61
NEK3-201ENST00000550331 ADGRB1O14514 1584 aa11.22□□□□□ -0.61
NEK3-201ENST00000550331 ADGRB2O60241 1585 aa11.22□□□□□ -0.61
NEK3-201ENST00000550331 PSME1Q06323 249 aa11.22□□□□□ -0.61
NEK3-201ENST00000550331 KRT28Q7Z3Y7 464 aa11.22□□□□□ -0.61
NEK3-201ENST00000550331 ANKARQ7Z5J8 1434 aa11.22□□□□□ -0.61
NEK3-201ENST00000550331 PRAM1Q96QH2 718 aa11.22□□□□□ -0.61
NEK3-201ENST00000550331 NWD2Q9ULI1 1742 aa11.22□□□□□ -0.61
NEK3-201ENST00000550331 HAP1P54257 671 aaPredicted RBP11.21□□□□□ -0.61
NEK3-201ENST00000550331 STAC3Q96MF2 364 aa11.21□□□□□ -0.61
NEK3-201ENST00000550331 CCDC9Q9Y3X0 531 aaKnown RBP11.21□□□□□ -0.61
NEK3-201ENST00000550331 ARHGEF10O15013 1369 aa11.2□□□□□ -0.62
NEK3-201ENST00000550331 HRCP23327 699 aa11.2□□□□□ -0.62
NEK3-201ENST00000550331 VPS72Q15906 364 aa11.2□□□□□ -0.62
NEK3-201ENST00000550331 KRT27Q7Z3Y8 459 aa11.2□□□□□ -0.62
NEK3-201ENST00000550331 ZNF687Q8N1G0 1237 aa11.2□□□□□ -0.62
NEK3-201ENST00000550331 POGKQ9P215 609 aa11.2□□□□□ -0.62
NEK3-201ENST00000550331 RGPD8O14715 1765 aaPredicted RBP11.2□□□□□ -0.62
NEK3-201ENST00000550331 EIF3AQ14152 1382 aaKnown RBP11.19□□□□□ -0.62
NEK3-201ENST00000550331 ABCA3Q99758 1704 aa11.19□□□□□ -0.62
NEK3-201ENST00000550331 BAG6P46379 1132 aa11.19□□□□□ -0.62
NEK3-201ENST00000550331 DCAF8Q5TAQ9 597 aa11.19□□□□□ -0.62
NEK3-201ENST00000550331 RGPD1P0DJD0 1748 aa11.18□□□□□ -0.62
NEK3-201ENST00000550331 A0A0G2JS52 829 aa11.18□□□□□ -0.62
NEK3-201ENST00000550331 RIMBP2O15034 1052 aa11.18□□□□□ -0.62
NEK3-201ENST00000550331 MYT1Q01538 1121 aa11.18□□□□□ -0.62
NEK3-201ENST00000550331 SAFB2Q14151 953 aaKnown RBP eCLIP11.18□□□□□ -0.62
NEK3-201ENST00000550331 ZNF467Q7Z7K2 595 aaPredicted RBP11.17□□□□□ -0.62
NEK3-201ENST00000550331 TRAK1Q9UPV9 953 aa11.17□□□□□ -0.62
NEK3-201ENST00000550331 TULP4Q9NRJ4 1543 aa11.16□□□□□ -0.62
NEK3-201ENST00000550331 G3V3G9 751 aa11.16□□□□□ -0.62
NEK3-201ENST00000550331 ONECUT3O60422 494 aaPredicted RBP11.16□□□□□ -0.62
NEK3-201ENST00000550331 CABLES1Q8TDN4 633 aa11.16□□□□□ -0.62
NEK3-201ENST00000550331 DCAF11Q8TEB1 546 aa11.16□□□□□ -0.62
NEK3-201ENST00000550331 R3HDM1Q15032 1099 aaKnown RBP11.15□□□□□ -0.62
NEK3-201ENST00000550331 NRAPQ86VF7 1730 aa11.15□□□□□ -0.63
NEK3-201ENST00000550331 GPRASP1Q5JY77 1395 aa11.15□□□□□ -0.63
NEK3-201ENST00000550331 WASLO00401 505 aaPredicted RBP11.14□□□□□ -0.63
NEK3-201ENST00000550331 EN1Q05925 392 aaPredicted RBP11.14□□□□□ -0.63
NEK3-201ENST00000550331 LMOD2Q6P5Q4 547 aa11.14□□□□□ -0.63
NEK3-201ENST00000550331 PMFBP1Q8TBY8 1022 aa11.14□□□□□ -0.63
NEK3-201ENST00000550331 HIRIP3Q9BW71 556 aaPredicted RBP11.14□□□□□ -0.63
NEK3-201ENST00000550331 KDM2AQ9Y2K7 1162 aa11.14□□□□□ -0.63
NEK3-201ENST00000550331 MINK1Q8N4C8 1332 aaPredicted RBP11.13□□□□□ -0.63
NEK3-201ENST00000550331 PRR36Q9H6K5 1346 aa11.13□□□□□ -0.63
NEK3-201ENST00000550331 TNS1Q9HBL0 1735 aaKnown RBP11.13□□□□□ -0.63
NEK3-201ENST00000550331 FAM98CQ17RN3 349 aaKnown RBP11.13□□□□□ -0.63
NEK3-201ENST00000550331 BOLA1Q9Y3E2 137 aa11.13□□□□□ -0.63
NEK3-201ENST00000550331 TRPM3Q9HCF6 1732 aaPredicted RBP11.12□□□□□ -0.63
NEK3-201ENST00000550331 FAM83GA6ND36 823 aa11.11□□□□□ -0.63
NEK3-201ENST00000550331 FAM182BQ5T319 152 aa11.11□□□□□ -0.63
NEK3-201ENST00000550331 ZSWIM6Q9HCJ5 1215 aa11.11□□□□□ -0.63
NEK3-201ENST00000550331 PLA2G2EQ9NZK7 142 aa11.11□□□□□ -0.63
NEK3-201ENST00000550331 ATP7BP35670 1465 aa11.11□□□□□ -0.63
NEK3-201ENST00000550331 ALS2Q96Q42 1657 aa11.11□□□□□ -0.63
NEK3-201ENST00000550331 COL14A1Q05707 1796 aaKnown RBP11.11□□□□□ -0.63
NEK3-201ENST00000550331 NGDNQ8NEJ9 315 aaKnown RBP11.1□□□□□ -0.63
NEK3-201ENST00000550331 ARHGEF28Q8N1W1 1705 aaKnown RBP11.09□□□□□ -0.63
NEK3-201ENST00000550331 YY1P25490 414 aa11.09□□□□□ -0.63
NEK3-201ENST00000550331 DPY19L2Q6NUT2 758 aa11.09□□□□□ -0.63
NEK3-201ENST00000550331 BTG4Q9NY30 223 aa11.09□□□□□ -0.63
NEK3-201ENST00000550331 DISP2A7MBM2 1401 aa11.09□□□□□ -0.63
NEK3-201ENST00000550331 THSD7AQ9UPZ6 1657 aa11.08□□□□□ -0.64
NEK3-201ENST00000550331 EZH2Q15910 746 aaKnown RBP11.08□□□□□ -0.64
NEK3-201ENST00000550331 ITSN1Q15811 1721 aa11.07□□□□□ -0.64
NEK3-201ENST00000550331 POLR3AO14802 1390 aaPredicted RBP11.07□□□□□ -0.64
NEK3-201ENST00000550331 NUDT16Q96DE0 195 aaKnown RBP11.07□□□□□ -0.64
NEK3-201ENST00000550331 KIAA1210Q9ULL0 1709 aa11.06□□□□□ -0.64
NEK3-201ENST00000550331 CRYBG1Q9Y4K1 1723 aa11.06□□□□□ -0.64
NEK3-201ENST00000550331 SPATA31A5Q5VU36 1347 aa11.06□□□□□ -0.64
NEK3-201ENST00000550331 SPATA31A7Q8IWB4 1347 aa11.06□□□□□ -0.64
NEK3-201ENST00000550331 RREB1Q92766 1687 aa11.05□□□□□ -0.64
NEK3-201ENST00000550331 PSEN1P49768 467 aa11.05□□□□□ -0.64
NEK3-201ENST00000550331 ANKRD13DQ6ZTN6 518 aa11.05□□□□□ -0.64
NEK3-201ENST00000550331 CDK19Q9BWU1 502 aa11.05□□□□□ -0.64
NEK3-201ENST00000550331 PRDM11Q9NQV5 511 aa11.05□□□□□ -0.64
NEK3-201ENST00000550331 TOPAZ1Q8N9V7 1692 aa11.04□□□□□ -0.64
NEK3-201ENST00000550331 NUP188Q5SRE5 1749 aa11.04□□□□□ -0.64
NEK3-201ENST00000550331 PLEKHG3A1L390 1219 aa11.04□□□□□ -0.64
NEK3-201ENST00000550331 TRIM37O94972 964 aa11.04□□□□□ -0.64
NEK3-201ENST00000550331 CAMKK2Q96RR4 588 aa11.04□□□□□ -0.64
NEK3-201ENST00000550331 KIAA0232Q92628 1395 aa11.03□□□□□ -0.64
NEK3-201ENST00000550331 APBA3O96018 575 aa11.03□□□□□ -0.64
NEK3-201ENST00000550331 NBPF8Q3BBV2 869 aa11.03□□□□□ -0.64
NEK3-201ENST00000550331 ACEP12821 1306 aa11.03□□□□□ -0.64
NEK3-201ENST00000550331 PARD3Q8TEW0 1356 aa11.03□□□□□ -0.64
NEK3-201ENST00000550331 NBPF1Q3BBV0 1214 aa11.02□□□□□ -0.65
NEK3-201ENST00000550331 PHRF1Q9P1Y6 1649 aaKnown RBP11.02□□□□□ -0.65
NEK3-201ENST00000550331 FAM196AQ6ZSG2 479 aa11.01□□□□□ -0.65
NEK3-201ENST00000550331 PPP1R1BQ9UD71 204 aaPredicted RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms