RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 SIRT1Q96EB6 747 aa15.72■□□□□ 0.11
VPS29-208ENST00000550267 ARHGEF10O15013 1369 aa15.72■□□□□ 0.11
VPS29-208ENST00000550267 EN1Q05925 392 aaPredicted RBP15.7■□□□□ 0.1
VPS29-208ENST00000550267 SAFB2Q14151 953 aaKnown RBP eCLIP15.7■□□□□ 0.1
VPS29-208ENST00000550267 NRAPQ86VF7 1730 aa15.7■□□□□ 0.1
VPS29-208ENST00000550267 PMFBP1Q8TBY8 1022 aa15.69■□□□□ 0.1
VPS29-208ENST00000550267 BTG4Q9NY30 223 aa15.69■□□□□ 0.1
VPS29-208ENST00000550267 FAM182BQ5T319 152 aa15.68■□□□□ 0.1
VPS29-208ENST00000550267 PRAM1Q96QH2 718 aa15.68■□□□□ 0.1
VPS29-208ENST00000550267 C14orf93Q9H972 538 aaKnown RBP15.68■□□□□ 0.1
VPS29-208ENST00000550267 DHX57Q6P158 1386 aaKnown RBP15.67■□□□□ 0.1
VPS29-208ENST00000550267 R3HDM1Q15032 1099 aaKnown RBP15.67■□□□□ 0.1
VPS29-208ENST00000550267 CFAP70Q5T0N1 1121 aa15.67■□□□□ 0.1
VPS29-208ENST00000550267 MPHOSPH9Q99550 1183 aa15.66■□□□□ 0.1
VPS29-208ENST00000550267 RGPD1P0DJD0 1748 aa15.65■□□□□ 0.1
VPS29-208ENST00000550267 ANKARQ7Z5J8 1434 aa15.65■□□□□ 0.1
VPS29-208ENST00000550267 TRPM3Q9HCF6 1732 aaPredicted RBP15.65■□□□□ 0.1
VPS29-208ENST00000550267 COL14A1Q05707 1796 aaKnown RBP15.64■□□□□ 0.1
VPS29-208ENST00000550267 ST18O60284 1047 aa15.63■□□□□ 0.09
VPS29-208ENST00000550267 POGKQ9P215 609 aa15.63■□□□□ 0.09
VPS29-208ENST00000550267 ALS2Q96Q42 1657 aa15.63■□□□□ 0.09
VPS29-208ENST00000550267 SPATA31A5Q5VU36 1347 aa15.63■□□□□ 0.09
VPS29-208ENST00000550267 SPATA31A7Q8IWB4 1347 aa15.63■□□□□ 0.09
VPS29-208ENST00000550267 TNS1Q9HBL0 1735 aaKnown RBP15.63■□□□□ 0.09
VPS29-208ENST00000550267 DISP2A7MBM2 1401 aa15.62■□□□□ 0.09
VPS29-208ENST00000550267 EZH2Q15910 746 aaKnown RBP15.62■□□□□ 0.09
VPS29-208ENST00000550267 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.62■□□□□ 0.09
VPS29-208ENST00000550267 THSD7AQ9UPZ6 1657 aa15.62■□□□□ 0.09
VPS29-208ENST00000550267 ADGRB2O60241 1585 aa15.62■□□□□ 0.09
VPS29-208ENST00000550267 PSEN1P49768 467 aa15.61■□□□□ 0.09
VPS29-208ENST00000550267 MKRN3Q13064 507 aaKnown RBP15.61■□□□□ 0.09
VPS29-208ENST00000550267 HIRIP3Q9BW71 556 aaPredicted RBP15.61■□□□□ 0.09
VPS29-208ENST00000550267 DLC1Q96QB1 1528 aa15.61■□□□□ 0.09
VPS29-208ENST00000550267 ACIN1Q9UKV3 1341 aaKnown RBP15.61■□□□□ 0.09
VPS29-208ENST00000550267 GPRASP1Q5JY77 1395 aa15.61■□□□□ 0.09
VPS29-208ENST00000550267 GOLGA2Q08379 1002 aa15.6■□□□□ 0.09
VPS29-208ENST00000550267 IFNLR1Q8IU57 520 aaPredicted RBP15.6■□□□□ 0.09
VPS29-208ENST00000550267 PDCD7Q8N8D1 485 aaKnown RBP15.6■□□□□ 0.09
VPS29-208ENST00000550267 SPOCK2Q92563 424 aa15.6■□□□□ 0.09
VPS29-208ENST00000550267 PRR36Q9H6K5 1346 aa15.6■□□□□ 0.09
VPS29-208ENST00000550267 CRYBG1Q9Y4K1 1723 aa15.59■□□□□ 0.09
VPS29-208ENST00000550267 PRDM11Q9NQV5 511 aa15.58■□□□□ 0.08
VPS29-208ENST00000550267 MINK1Q8N4C8 1332 aaPredicted RBP15.58■□□□□ 0.08
VPS29-208ENST00000550267 TRIM37O94972 964 aa15.57■□□□□ 0.08
VPS29-208ENST00000550267 CDAN1Q8IWY9 1227 aa15.57■□□□□ 0.08
VPS29-208ENST00000550267 CAMKK2Q96RR4 588 aa15.57■□□□□ 0.08
VPS29-208ENST00000550267 TRAK1Q9UPV9 953 aa15.57■□□□□ 0.08
VPS29-208ENST00000550267 TULP4Q9NRJ4 1543 aa15.57■□□□□ 0.08
VPS29-208ENST00000550267 SPATA31A1Q5TZJ5 1347 aa15.56■□□□□ 0.08
VPS29-208ENST00000550267 ADGRB1O14514 1584 aa15.56■□□□□ 0.08
VPS29-208ENST00000550267 EIF3AQ14152 1382 aaKnown RBP15.55■□□□□ 0.08
VPS29-208ENST00000550267 SNPHO15079 494 aa15.55■□□□□ 0.08
VPS29-208ENST00000550267 CHRNA2Q15822 529 aa15.55■□□□□ 0.08
VPS29-208ENST00000550267 NGDNQ8NEJ9 315 aaKnown RBP15.55■□□□□ 0.08
VPS29-208ENST00000550267 KIAA0232Q92628 1395 aa15.54■□□□□ 0.08
VPS29-208ENST00000550267 WASLO00401 505 aaPredicted RBP15.54■□□□□ 0.08
VPS29-208ENST00000550267 APBA3O96018 575 aa15.54■□□□□ 0.08
VPS29-208ENST00000550267 FAM196AQ6ZSG2 479 aa15.54■□□□□ 0.08
VPS29-208ENST00000550267 L3MBTL3Q96JM7 780 aaPredicted RBP15.54■□□□□ 0.08
VPS29-208ENST00000550267 STRN4Q9NRL3 753 aa15.54■□□□□ 0.08
VPS29-208ENST00000550267 PDAP1Q13442 181 aaKnown RBP15.53■□□□□ 0.08
VPS29-208ENST00000550267 TMEM121BQ9BXQ6 578 aaPredicted RBP15.52■□□□□ 0.08
VPS29-208ENST00000550267 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.52■□□□□ 0.08
VPS29-208ENST00000550267 PARD3Q8TEW0 1356 aa15.51■□□□□ 0.07
VPS29-208ENST00000550267 PHRF1Q9P1Y6 1649 aaKnown RBP15.51■□□□□ 0.07
VPS29-208ENST00000550267 YY1P25490 414 aa15.51■□□□□ 0.07
VPS29-208ENST00000550267 ZC3H6P61129 1189 aaKnown RBP15.51■□□□□ 0.07
VPS29-208ENST00000550267 USP35Q9P2H5 1018 aa15.51■□□□□ 0.07
VPS29-208ENST00000550267 CIZ1Q9ULV3 898 aaPredicted RBP15.51■□□□□ 0.07
VPS29-208ENST00000550267 RREB1Q92766 1687 aa15.51■□□□□ 0.07
VPS29-208ENST00000550267 NUTM2GQ5VZR2 741 aa15.5■□□□□ 0.07
VPS29-208ENST00000550267 NUP188Q5SRE5 1749 aa15.48■□□□□ 0.07
VPS29-208ENST00000550267 ATP7BP35670 1465 aa15.48■□□□□ 0.07
VPS29-208ENST00000550267 PDE3BQ13370 1112 aa15.48■□□□□ 0.07
VPS29-208ENST00000550267 C3orf67Q6ZVT6 689 aa15.48■□□□□ 0.07
VPS29-208ENST00000550267 NUDT16Q96DE0 195 aaKnown RBP15.48■□□□□ 0.07
VPS29-208ENST00000550267 KDM2AQ9Y2K7 1162 aa15.48■□□□□ 0.07
VPS29-208ENST00000550267 SSH2Q76I76 1423 aa15.48■□□□□ 0.07
VPS29-208ENST00000550267 EVA1CP58658 441 aa15.47■□□□□ 0.07
VPS29-208ENST00000550267 NBPF8Q3BBV2 869 aa15.47■□□□□ 0.07
VPS29-208ENST00000550267 NBPF14Q5TI25 921 aa15.47■□□□□ 0.07
VPS29-208ENST00000550267 BARGINQ6ZT62 677 aa15.46■□□□□ 0.07
VPS29-208ENST00000550267 ITSN1Q15811 1721 aa15.46■□□□□ 0.06
VPS29-208ENST00000550267 LARP1Q6PKG0 1096 aaKnown RBP15.45■□□□□ 0.06
VPS29-208ENST00000550267 CAMTA1Q9Y6Y1 1673 aa15.44■□□□□ 0.06
VPS29-208ENST00000550267 DCAF11Q8TEB1 546 aa15.44■□□□□ 0.06
VPS29-208ENST00000550267 PPP1R1BQ9UD71 204 aaPredicted RBP15.44■□□□□ 0.06
VPS29-208ENST00000550267 NRKQ7Z2Y5 1582 aa15.44■□□□□ 0.06
VPS29-208ENST00000550267 TCP11L2Q8N4U5 519 aa15.43■□□□□ 0.06
VPS29-208ENST00000550267 SPON1Q9HCB6 807 aa15.43■□□□□ 0.06
VPS29-208ENST00000550267 ARHGEF28Q8N1W1 1705 aaKnown RBP15.43■□□□□ 0.06
VPS29-208ENST00000550267 ACEP12821 1306 aa15.43■□□□□ 0.06
VPS29-208ENST00000550267 LMO7Q8WWI1 1683 aa15.42■□□□□ 0.06
VPS29-208ENST00000550267 KCNQ2O43526 872 aa15.42■□□□□ 0.06
VPS29-208ENST00000550267 CDK19Q9BWU1 502 aa15.42■□□□□ 0.06
VPS29-208ENST00000550267 POLR3AO14802 1390 aaPredicted RBP15.41■□□□□ 0.06
VPS29-208ENST00000550267 TOPAZ1Q8N9V7 1692 aa15.4■□□□□ 0.06
VPS29-208ENST00000550267 CPDO75976 1380 aa15.39■□□□□ 0.05
VPS29-208ENST00000550267 NINLQ9Y2I6 1382 aa15.39■□□□□ 0.05
VPS29-208ENST00000550267 ABTB2Q8N961 1025 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms