RNA–Protein interactions for RNA: ENST00000547950.1

SCAF11-211, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-211ENST00000547950 CARD11Q9BXL7 1154 aa9.54□□□□□ -0.88
SCAF11-211ENST00000547950 BLMP54132 1417 aaPredicted RBP9.54□□□□□ -0.88
SCAF11-211ENST00000547950 LARP1Q6PKG0 1096 aaKnown RBP9.53□□□□□ -0.88
SCAF11-211ENST00000547950 ARHGEF28Q8N1W1 1705 aaKnown RBP9.53□□□□□ -0.88
SCAF11-211ENST00000547950 SPATA31A1Q5TZJ5 1347 aa9.53□□□□□ -0.88
SCAF11-211ENST00000547950 PLCD3Q8N3E9 789 aa9.52□□□□□ -0.89
SCAF11-211ENST00000547950 TONSLQ96HA7 1378 aa9.51□□□□□ -0.89
SCAF11-211ENST00000547950 TRPM3Q9HCF6 1732 aaPredicted RBP9.51□□□□□ -0.89
SCAF11-211ENST00000547950 MARF1Q9Y4F3 1742 aaKnown RBP9.51□□□□□ -0.89
SCAF11-211ENST00000547950 SOX12O15370 315 aa9.51□□□□□ -0.89
SCAF11-211ENST00000547950 TMC1Q8TDI8 760 aa9.51□□□□□ -0.89
SCAF11-211ENST00000547950 USP19O94966 1318 aa9.51□□□□□ -0.89
SCAF11-211ENST00000547950 BAG6P46379 1132 aa9.5□□□□□ -0.89
SCAF11-211ENST00000547950 PDE3BQ13370 1112 aa9.5□□□□□ -0.89
SCAF11-211ENST00000547950 TCP11L2Q8N4U5 519 aa9.5□□□□□ -0.89
SCAF11-211ENST00000547950 ALS2Q96Q42 1657 aa9.5□□□□□ -0.89
SCAF11-211ENST00000547950 KIAA1210Q9ULL0 1709 aa9.5□□□□□ -0.89
SCAF11-211ENST00000547950 TTC21BQ7Z4L5 1316 aa9.5□□□□□ -0.89
SCAF11-211ENST00000547950 USP6P35125 1406 aa9.49□□□□□ -0.89
SCAF11-211ENST00000547950 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.49□□□□□ -0.89
SCAF11-211ENST00000547950 TRIM37O94972 964 aa9.49□□□□□ -0.89
SCAF11-211ENST00000547950 EN1Q05925 392 aaPredicted RBP9.49□□□□□ -0.89
SCAF11-211ENST00000547950 FAM196AQ6ZSG2 479 aa9.49□□□□□ -0.89
SCAF11-211ENST00000547950 BARGINQ6ZT62 677 aa9.49□□□□□ -0.89
SCAF11-211ENST00000547950 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.49□□□□□ -0.89
SCAF11-211ENST00000547950 BRD4O60885 1362 aaPredicted RBP9.49□□□□□ -0.89
SCAF11-211ENST00000547950 CPDO75976 1380 aa9.49□□□□□ -0.89
SCAF11-211ENST00000547950 COL14A1Q05707 1796 aaKnown RBP9.48□□□□□ -0.89
SCAF11-211ENST00000547950 TOM1L2Q6ZVM7 507 aa9.48□□□□□ -0.89
SCAF11-211ENST00000547950 SLC12A5Q9H2X9 1139 aa9.48□□□□□ -0.89
SCAF11-211ENST00000547950 PLCH1Q4KWH8 1693 aa9.48□□□□□ -0.89
SCAF11-211ENST00000547950 KTN1Q86UP2 1357 aaKnown RBP9.48□□□□□ -0.89
SCAF11-211ENST00000547950 SSH2Q76I76 1423 aa9.48□□□□□ -0.89
SCAF11-211ENST00000547950 PSDA5PKW4 1024 aaPredicted RBP9.47□□□□□ -0.89
SCAF11-211ENST00000547950 APBA3O96018 575 aa9.47□□□□□ -0.89
SCAF11-211ENST00000547950 KCNH5Q8NCM2 988 aa9.47□□□□□ -0.89
SCAF11-211ENST00000547950 AXIN2Q9Y2T1 843 aa9.47□□□□□ -0.89
SCAF11-211ENST00000547950 NWD2Q9ULI1 1742 aa9.47□□□□□ -0.89
SCAF11-211ENST00000547950 CAMTA1Q9Y6Y1 1673 aa9.46□□□□□ -0.89
SCAF11-211ENST00000547950 ABCA3Q99758 1704 aa9.46□□□□□ -0.89
SCAF11-211ENST00000547950 CSB-PGBD3P0DP91 1061 aa9.46□□□□□ -0.9
SCAF11-211ENST00000547950 EZH2Q15910 746 aaKnown RBP9.46□□□□□ -0.9
SCAF11-211ENST00000547950 HDGFL2Q7Z4V5 671 aaPredicted RBP9.46□□□□□ -0.9
SCAF11-211ENST00000547950 ARHGEF25Q86VW2 580 aa9.46□□□□□ -0.9
SCAF11-211ENST00000547950 MS4A3Q96HJ5 214 aa9.46□□□□□ -0.9
SCAF11-211ENST00000547950 THRAP3Q9Y2W1 955 aaKnown RBP9.46□□□□□ -0.9
SCAF11-211ENST00000547950 TTC21AQ8NDW8 1320 aa9.46□□□□□ -0.9
SCAF11-211ENST00000547950 AATKQ6ZMQ8 1374 aa9.46□□□□□ -0.9
SCAF11-211ENST00000547950 ITSN1Q15811 1721 aa9.45□□□□□ -0.9
SCAF11-211ENST00000547950 ST20-MTHFSA0A0A6YYL1 179 aa9.45□□□□□ -0.9
SCAF11-211ENST00000547950 NME9Q86XW9 330 aa9.45□□□□□ -0.9
SCAF11-211ENST00000547950 TRPM1Q7Z4N2 1603 aa9.45□□□□□ -0.9
SCAF11-211ENST00000547950 PCGF6Q9BYE7 350 aa9.44□□□□□ -0.9
SCAF11-211ENST00000547950 TERF2IPQ9NYB0 399 aa9.44□□□□□ -0.9
SCAF11-211ENST00000547950 TOPAZ1Q8N9V7 1692 aa9.44□□□□□ -0.9
SCAF11-211ENST00000547950 QRICH2Q9H0J4 1663 aa9.44□□□□□ -0.9
SCAF11-211ENST00000547950 NRAPQ86VF7 1730 aa9.44□□□□□ -0.9
SCAF11-211ENST00000547950 EP400Q96L91 3159 aa9.44□□□□□ -0.9
SCAF11-211ENST00000547950 COL5A2P05997 1499 aaPredicted RBP9.43□□□□□ -0.9
SCAF11-211ENST00000547950 CPSF1Q10570 1443 aaKnown RBP9.43□□□□□ -0.9
SCAF11-211ENST00000547950 R3HDM1Q15032 1099 aaKnown RBP9.43□□□□□ -0.9
SCAF11-211ENST00000547950 DDB1Q16531 1140 aa9.43□□□□□ -0.9
SCAF11-211ENST00000547950 RASEFQ8IZ41 740 aa9.43□□□□□ -0.9
SCAF11-211ENST00000547950 CAMKK2Q96RR4 588 aa9.43□□□□□ -0.9
SCAF11-211ENST00000547950 NRKQ7Z2Y5 1582 aa9.42□□□□□ -0.9
SCAF11-211ENST00000547950 CRB1P82279 1406 aa9.42□□□□□ -0.9
SCAF11-211ENST00000547950 SBNO2Q9Y2G9 1366 aa9.42□□□□□ -0.9
SCAF11-211ENST00000547950 WDR17Q8IZU2 1322 aa9.42□□□□□ -0.9
SCAF11-211ENST00000547950 PUS7Q96PZ0 661 aaKnown RBP9.42□□□□□ -0.9
SCAF11-211ENST00000547950 TESK2Q96S53 571 aa9.42□□□□□ -0.9
SCAF11-211ENST00000547950 BRWD3Q6RI45 1802 aa9.42□□□□□ -0.9
SCAF11-211ENST00000547950 CARD10Q9BWT7 1032 aa9.41□□□□□ -0.9
SCAF11-211ENST00000547950 NLRP2Q9NX02 1062 aa9.41□□□□□ -0.9
SCAF11-211ENST00000547950 CRYBG1Q9Y4K1 1723 aa9.41□□□□□ -0.9
SCAF11-211ENST00000547950 PHRF1Q9P1Y6 1649 aaKnown RBP9.41□□□□□ -0.9
SCAF11-211ENST00000547950 EXOC5O00471 708 aa9.4□□□□□ -0.9
SCAF11-211ENST00000547950 SLC24A1O60721 1099 aa9.4□□□□□ -0.9
SCAF11-211ENST00000547950 MARCH10Q8NA82 808 aaPredicted RBP9.4□□□□□ -0.9
SCAF11-211ENST00000547950 CDCA7Q9BWT1 371 aaPredicted RBP9.4□□□□□ -0.9
SCAF11-211ENST00000547950 SLIT3O75094 1523 aa9.4□□□□□ -0.91
SCAF11-211ENST00000547950 USP31Q70CQ4 1352 aa9.39□□□□□ -0.91
SCAF11-211ENST00000547950 C11orf95C9JLR9 678 aaPredicted RBP9.39□□□□□ -0.91
SCAF11-211ENST00000547950 TMF1P82094 1093 aa9.39□□□□□ -0.91
SCAF11-211ENST00000547950 NBPF14Q5TI25 921 aa9.39□□□□□ -0.91
SCAF11-211ENST00000547950 PTF1AQ7RTS3 328 aa9.39□□□□□ -0.91
SCAF11-211ENST00000547950 PELP1Q8IZL8 1130 aaKnown RBP9.39□□□□□ -0.91
SCAF11-211ENST00000547950 LTV1Q96GA3 475 aaPredicted RBP9.39□□□□□ -0.91
SCAF11-211ENST00000547950 ZBTB47Q9UFB7 747 aaPredicted RBP9.39□□□□□ -0.91
SCAF11-211ENST00000547950 THSD7AQ9UPZ6 1657 aa9.39□□□□□ -0.91
SCAF11-211ENST00000547950 A0A1W2PP64 1363 aa9.38□□□□□ -0.91
SCAF11-211ENST00000547950 SRCAPQ6ZRS2 3230 aa9.38□□□□□ -0.91
SCAF11-211ENST00000547950 FBLN1P23142 703 aa9.38□□□□□ -0.91
SCAF11-211ENST00000547950 ANKRD24Q8TF21 1146 aa9.38□□□□□ -0.91
SCAF11-211ENST00000547950 KIF12Q96FN5 646 aa9.38□□□□□ -0.91
SCAF11-211ENST00000547950 COG3Q96JB2 828 aa9.38□□□□□ -0.91
SCAF11-211ENST00000547950 CD163L1Q9NR16 1453 aa9.38□□□□□ -0.91
SCAF11-211ENST00000547950 LMO7Q8WWI1 1683 aa9.38□□□□□ -0.91
SCAF11-211ENST00000547950 BCL11BQ9C0K0 894 aaPredicted RBP9.37□□□□□ -0.91
SCAF11-211ENST00000547950 DISP2A7MBM2 1401 aa9.37□□□□□ -0.91
SCAF11-211ENST00000547950 EDC4Q6P2E9 1401 aaKnown RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms