RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 NECTIN2Q92692 538 aa18.81■□□□□ 0.6
USP28-214ENST00000545540 LRRC7Q96NW7 1537 aa18.81■□□□□ 0.6
USP28-214ENST00000545540 ADGRB2O60241 1585 aa18.81■□□□□ 0.6
USP28-214ENST00000545540 DIP2CQ9Y2E4 1556 aa18.81■□□□□ 0.6
USP28-214ENST00000545540 GOLGA6L3A6NEY3 463 aa18.81■□□□□ 0.6
USP28-214ENST00000545540 ALDH1L2Q3SY69 923 aa18.8■□□□□ 0.6
USP28-214ENST00000545540 VIRMAQ69YN4 1812 aaKnown RBP18.8■□□□□ 0.6
USP28-214ENST00000545540 WASLO00401 505 aaPredicted RBP18.8■□□□□ 0.6
USP28-214ENST00000545540 GNAI1P63096 354 aa18.8■□□□□ 0.6
USP28-214ENST00000545540 PNPLA6Q8IY17 1366 aa18.79■□□□□ 0.6
USP28-214ENST00000545540 FOXO3O43524 673 aa18.79■□□□□ 0.6
USP28-214ENST00000545540 TNPO1Q92973 898 aaKnown RBP18.79■□□□□ 0.6
USP28-214ENST00000545540 METP08581 1390 aa18.79■□□□□ 0.6
USP28-214ENST00000545540 KIF2CQ99661 725 aa18.79■□□□□ 0.6
USP28-214ENST00000545540 HSP90AB2PQ58FF8 381 aa18.78■□□□□ 0.6
USP28-214ENST00000545540 SLC4A10Q6U841 1118 aa18.78■□□□□ 0.6
USP28-214ENST00000545540 TSHZ3Q63HK5 1081 aa18.77■□□□□ 0.6
USP28-214ENST00000545540 ZNF692Q9BU19 519 aaPredicted RBP18.77■□□□□ 0.6
USP28-214ENST00000545540 F6X3S4 739 aa18.77■□□□□ 0.59
USP28-214ENST00000545540 GSPT1P15170 499 aaKnown RBP18.77■□□□□ 0.59
USP28-214ENST00000545540 CHAMP1Q96JM3 812 aa18.76■□□□□ 0.59
USP28-214ENST00000545540 ARHGEF40Q8TER5 1519 aa18.76■□□□□ 0.59
USP28-214ENST00000545540 USP32Q8NFA0 1604 aa18.76■□□□□ 0.59
USP28-214ENST00000545540 ALKQ9UM73 1620 aa18.75■□□□□ 0.59
USP28-214ENST00000545540 FAM135BQ49AJ0 1406 aa18.75■□□□□ 0.59
USP28-214ENST00000545540 NUTM2GQ5VZR2 741 aa18.75■□□□□ 0.59
USP28-214ENST00000545540 GAS2L2Q8NHY3 880 aa18.75■□□□□ 0.59
USP28-214ENST00000545540 BMP2KLQ5H9B9 411 aa18.75■□□□□ 0.59
USP28-214ENST00000545540 FOXD4L5Q5VV16 416 aaPredicted RBP18.75■□□□□ 0.59
USP28-214ENST00000545540 FOXD4L4Q8WXT5 416 aaPredicted RBP18.75■□□□□ 0.59
USP28-214ENST00000545540 CFAP44Q96MT7 982 aa18.75■□□□□ 0.59
USP28-214ENST00000545540 IFT57Q9NWB7 429 aa18.75■□□□□ 0.59
USP28-214ENST00000545540 SSFA2P28290 1259 aa18.74■□□□□ 0.59
USP28-214ENST00000545540 SLC26A8Q96RN1 970 aa18.74■□□□□ 0.59
USP28-214ENST00000545540 ESF1Q9H501 851 aaKnown RBP18.74■□□□□ 0.59
USP28-214ENST00000545540 MEIS3Q99687 375 aa18.73■□□□□ 0.59
USP28-214ENST00000545540 CCDC61Q9Y6R9 512 aa18.73■□□□□ 0.59
USP28-214ENST00000545540 RBM25P49756 843 aaKnown RBP18.73■□□□□ 0.59
USP28-214ENST00000545540 EIF4A2Q14240 407 aaKnown RBP18.73■□□□□ 0.59
USP28-214ENST00000545540 PRR36Q9H6K5 1346 aa18.72■□□□□ 0.59
USP28-214ENST00000545540 TMEM131LA2VDJ0 1609 aa18.72■□□□□ 0.59
USP28-214ENST00000545540 GAS2L3Q86XJ1 694 aa18.72■□□□□ 0.59
USP28-214ENST00000545540 ZNF853P0CG23 659 aa18.72■□□□□ 0.59
USP28-214ENST00000545540 L1TD1Q5T7N2 865 aaKnown RBP18.71■□□□□ 0.59
USP28-214ENST00000545540 PLEKHM2Q8IWE5 1019 aa18.71■□□□□ 0.59
USP28-214ENST00000545540 GCC1Q96CN9 775 aa18.71■□□□□ 0.59
USP28-214ENST00000545540 ARHGAP31Q2M1Z3 1444 aa18.71■□□□□ 0.59
USP28-214ENST00000545540 RIMS2Q9UQ26 1411 aa18.71■□□□□ 0.59
USP28-214ENST00000545540 NCBP3Q53F19 620 aaKnown RBP18.71■□□□□ 0.59
USP28-214ENST00000545540 G2E3Q7L622 706 aa18.71■□□□□ 0.59
USP28-214ENST00000545540 MAP2P11137 1827 aaKnown RBP18.71■□□□□ 0.59
USP28-214ENST00000545540 SLC4A2P04920 1241 aa18.71■□□□□ 0.59
USP28-214ENST00000545540 PKP1Q13835 747 aa18.7■□□□□ 0.58
USP28-214ENST00000545540 NEO1Q92859 1461 aa18.7■□□□□ 0.58
USP28-214ENST00000545540 ZFYVE9O95405 1425 aa18.7■□□□□ 0.58
USP28-214ENST00000545540 NOL8Q76FK4 1167 aaKnown RBP18.7■□□□□ 0.58
USP28-214ENST00000545540 NCLP19338 710 aaKnown RBP18.7■□□□□ 0.58
USP28-214ENST00000545540 FAM43AQ8N2R8 423 aa18.7■□□□□ 0.58
USP28-214ENST00000545540 CEBPAP49715 358 aaPredicted RBP18.69■□□□□ 0.58
USP28-214ENST00000545540 ABCC4O15439 1325 aa18.69■□□□□ 0.58
USP28-214ENST00000545540 CPS1P31327 1500 aa18.69■□□□□ 0.58
USP28-214ENST00000545540 TPRNQ4KMQ1 711 aa18.68■□□□□ 0.58
USP28-214ENST00000545540 CALD1Q05682 793 aaKnown RBP18.68■□□□□ 0.58
USP28-214ENST00000545540 LTV1Q96GA3 475 aaPredicted RBP18.68■□□□□ 0.58
USP28-214ENST00000545540 TSPOAP1O95153 1857 aa18.67■□□□□ 0.58
USP28-214ENST00000545540 K7ELQ4 463 aaPredicted RBP18.67■□□□□ 0.58
USP28-214ENST00000545540 API5Q9BZZ5 524 aaKnown RBP18.67■□□□□ 0.58
USP28-214ENST00000545540 ZNF428Q96B54 188 aa18.67■□□□□ 0.58
USP28-214ENST00000545540 PREX1Q8TCU6 1659 aa18.67■□□□□ 0.58
USP28-214ENST00000545540 CDC45O75419 566 aa18.66■□□□□ 0.58
USP28-214ENST00000545540 ACEP12821 1306 aa18.66■□□□□ 0.58
USP28-214ENST00000545540 FSD2A1L4K1 749 aa18.66■□□□□ 0.58
USP28-214ENST00000545540 FOXD4L6Q3SYB3 417 aaPredicted RBP18.65■□□□□ 0.58
USP28-214ENST00000545540 FOXD4L3Q6VB84 417 aaPredicted RBP18.65■□□□□ 0.58
USP28-214ENST00000545540 ARHGAP45Q92619 1136 aa18.65■□□□□ 0.58
USP28-214ENST00000545540 GRPEL1Q9HAV7 217 aa18.65■□□□□ 0.58
USP28-214ENST00000545540 EXOC6BQ9Y2D4 811 aa18.65■□□□□ 0.58
USP28-214ENST00000545540 MED14O60244 1454 aa18.65■□□□□ 0.58
USP28-214ENST00000545540 AK9Q5TCS8 1911 aa18.65■□□□□ 0.58
USP28-214ENST00000545540 CFAP74Q9C0B2 1584 aa18.64■□□□□ 0.58
USP28-214ENST00000545540 ZMYM3Q14202 1370 aa18.64■□□□□ 0.58
USP28-214ENST00000545540 SDSP20132 328 aa18.64■□□□□ 0.57
USP28-214ENST00000545540 RBM33Q96EV2 1170 aaKnown RBP18.64■□□□□ 0.57
USP28-214ENST00000545540 A2ML1A8K2U0 1454 aa18.64■□□□□ 0.57
USP28-214ENST00000545540 DDIT3P35638 169 aa18.64■□□□□ 0.57
USP28-214ENST00000545540 DTNBO60941 627 aa18.64■□□□□ 0.57
USP28-214ENST00000545540 ZGPATQ8N5A5 531 aaKnown RBP18.64■□□□□ 0.57
USP28-214ENST00000545540 CEP85Q6P2H3 762 aa18.63■□□□□ 0.57
USP28-214ENST00000545540 SNX21Q969T3 373 aa18.63■□□□□ 0.57
USP28-214ENST00000545540 DCTPP1Q9H773 170 aa18.63■□□□□ 0.57
USP28-214ENST00000545540 MSH6P52701 1360 aa18.63■□□□□ 0.57
USP28-214ENST00000545540 DDX11L8A8MPP1 907 aa18.63■□□□□ 0.57
USP28-214ENST00000545540 ZBTB7CA1YPR0 619 aa18.62■□□□□ 0.57
USP28-214ENST00000545540 LMOD3Q0VAK6 560 aa18.62■□□□□ 0.57
USP28-214ENST00000545540 RAB3GAP1Q15042 981 aa18.62■□□□□ 0.57
USP28-214ENST00000545540 MCTP1Q6DN14 999 aa18.62■□□□□ 0.57
USP28-214ENST00000545540 TTC22Q5TAA0 569 aa18.62■□□□□ 0.57
USP28-214ENST00000545540 MTHFSDQ2M296 383 aaKnown RBP18.61■□□□□ 0.57
USP28-214ENST00000545540 NAP1L5Q96NT1 182 aaPredicted RBP18.61■□□□□ 0.57
USP28-214ENST00000545540 TSPYL4Q9UJ04 414 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms