RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 RRP7BPQ9NSQ0 103 aa6.43□□□□□ -1.38
SNHG1-220ENST00000544550 NHSL1Q5SYE7 1610 aa6.43□□□□□ -1.38
SNHG1-220ENST00000544550 SPDYE16A6NNV3 312 aaPredicted RBP6.42□□□□□ -1.38
SNHG1-220ENST00000544550 DPYSL4O14531 572 aa6.42□□□□□ -1.38
SNHG1-220ENST00000544550 PDIA6Q15084 440 aa6.42□□□□□ -1.38
SNHG1-220ENST00000544550 GJD4Q96KN9 370 aaPredicted RBP6.42□□□□□ -1.38
SNHG1-220ENST00000544550 YY1P25490 414 aa6.41□□□□□ -1.38
SNHG1-220ENST00000544550 ZC3H15Q8WU90 426 aaKnown RBP6.41□□□□□ -1.38
SNHG1-220ENST00000544550 SRCAPQ6ZRS2 3230 aa6.41□□□□□ -1.38
SNHG1-220ENST00000544550 ANKRD30AQ9BXX3 1397 aa6.41□□□□□ -1.38
SNHG1-220ENST00000544550 UNC13BO14795 1591 aa6.4□□□□□ -1.38
SNHG1-220ENST00000544550 HRCP23327 699 aa6.4□□□□□ -1.38
SNHG1-220ENST00000544550 MLLT3P42568 568 aaPredicted RBP6.4□□□□□ -1.38
SNHG1-220ENST00000544550 SOS2Q07890 1332 aaPredicted RBP6.4□□□□□ -1.39
SNHG1-220ENST00000544550 ADGRL3Q9HAR2 1447 aa6.4□□□□□ -1.39
SNHG1-220ENST00000544550 ZNF316A6NFI3 1004 aaPredicted RBP6.39□□□□□ -1.39
SNHG1-220ENST00000544550 BAG6P46379 1132 aa6.39□□□□□ -1.39
SNHG1-220ENST00000544550 DEFB132Q7Z7B7 95 aa6.39□□□□□ -1.39
SNHG1-220ENST00000544550 DDX17Q92841 729 aaKnown RBP6.39□□□□□ -1.39
SNHG1-220ENST00000544550 IRX2Q9BZI1 471 aaPredicted RBP6.39□□□□□ -1.39
SNHG1-220ENST00000544550 ABCC5O15440 1437 aa6.39□□□□□ -1.39
SNHG1-220ENST00000544550 PTPRUQ92729 1446 aa6.39□□□□□ -1.39
SNHG1-220ENST00000544550 C1orf167Q5SNV9 1468 aa6.39□□□□□ -1.39
SNHG1-220ENST00000544550 BCL9LQ86UU0 1499 aa6.39□□□□□ -1.39
SNHG1-220ENST00000544550 TMEM131LA2VDJ0 1609 aa6.39□□□□□ -1.39
SNHG1-220ENST00000544550 CFAP65Q6ZU64 1925 aaKnown RBP6.38□□□□□ -1.39
SNHG1-220ENST00000544550 DAPK1P53355 1430 aa6.38□□□□□ -1.39
SNHG1-220ENST00000544550 LAMC1P11047 1609 aa6.37□□□□□ -1.39
SNHG1-220ENST00000544550 PTPN23Q9H3S7 1636 aa6.37□□□□□ -1.39
SNHG1-220ENST00000544550 MYOM2P54296 1465 aa6.37□□□□□ -1.39
SNHG1-220ENST00000544550 NPHP3Q7Z494 1330 aa6.37□□□□□ -1.39
SNHG1-220ENST00000544550 PSDA5PKW4 1024 aaPredicted RBP6.37□□□□□ -1.39
SNHG1-220ENST00000544550 MAP3K9P80192 1104 aa6.37□□□□□ -1.39
SNHG1-220ENST00000544550 UNC5CLQ8IV45 518 aa6.37□□□□□ -1.39
SNHG1-220ENST00000544550 OXER1Q8TDS5 423 aa6.37□□□□□ -1.39
SNHG1-220ENST00000544550 SPHKAPQ2M3C7 1700 aa6.36□□□□□ -1.39
SNHG1-220ENST00000544550 XRN1Q8IZH2 1706 aaKnown RBP6.36□□□□□ -1.39
SNHG1-220ENST00000544550 GCC2Q8IWJ2 1684 aa6.36□□□□□ -1.39
SNHG1-220ENST00000544550 COL22A1Q8NFW1 1626 aaPredicted RBP6.36□□□□□ -1.39
SNHG1-220ENST00000544550 RALGAPBQ86X10 1494 aa6.36□□□□□ -1.39
SNHG1-220ENST00000544550 LRPPRCP42704 1394 aaKnown RBP6.36□□□□□ -1.39
SNHG1-220ENST00000544550 ZMYND10O75800 440 aa6.36□□□□□ -1.39
SNHG1-220ENST00000544550 RBM26Q5T8P6 1007 aaKnown RBP6.36□□□□□ -1.39
SNHG1-220ENST00000544550 IFFO2Q5TF58 517 aa6.36□□□□□ -1.39
SNHG1-220ENST00000544550 SEPT12Q8IYM1 358 aa6.36□□□□□ -1.39
SNHG1-220ENST00000544550 CROCC2H7BZ55 1655 aa6.36□□□□□ -1.39
SNHG1-220ENST00000544550 KRT27Q7Z3Y8 459 aa6.35□□□□□ -1.39
SNHG1-220ENST00000544550 ANKRD50Q9ULJ7 1429 aa6.34□□□□□ -1.39
SNHG1-220ENST00000544550 METP08581 1390 aa6.34□□□□□ -1.39
SNHG1-220ENST00000544550 ARSIQ5FYB1 569 aa6.34□□□□□ -1.39
SNHG1-220ENST00000544550 PTCD2Q8WV60 388 aaKnown RBP6.34□□□□□ -1.39
SNHG1-220ENST00000544550 ORAI2Q96SN7 254 aa6.34□□□□□ -1.39
SNHG1-220ENST00000544550 CHIC2Q9UKJ5 165 aa6.34□□□□□ -1.39
SNHG1-220ENST00000544550 SLIT2O94813 1529 aa6.34□□□□□ -1.39
SNHG1-220ENST00000544550 ONECUT3O60422 494 aaPredicted RBP6.33□□□□□ -1.4
SNHG1-220ENST00000544550 SLC34A2O95436 690 aa6.33□□□□□ -1.4
SNHG1-220ENST00000544550 R3HDM1Q15032 1099 aaKnown RBP6.33□□□□□ -1.4
SNHG1-220ENST00000544550 VPS72Q15906 364 aa6.33□□□□□ -1.4
SNHG1-220ENST00000544550 BARGINQ6ZT62 677 aa6.33□□□□□ -1.4
SNHG1-220ENST00000544550 ADGRL2O95490 1459 aa6.33□□□□□ -1.4
SNHG1-220ENST00000544550 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.33□□□□□ -1.4
SNHG1-220ENST00000544550 VPS8Q8N3P4 1428 aa6.33□□□□□ -1.4
SNHG1-220ENST00000544550 GLI3P10071 1580 aa6.32□□□□□ -1.4
SNHG1-220ENST00000544550 TBC1D12O60347 775 aa6.32□□□□□ -1.4
SNHG1-220ENST00000544550 ZNF326Q5BKZ1 582 aaKnown RBP6.32□□□□□ -1.4
SNHG1-220ENST00000544550 ESCO1Q5FWF5 840 aa6.32□□□□□ -1.4
SNHG1-220ENST00000544550 KANK4Q5T7N3 995 aaPredicted RBP6.32□□□□□ -1.4
SNHG1-220ENST00000544550 GPIHBP1Q8IV16 184 aa6.32□□□□□ -1.4
SNHG1-220ENST00000544550 SLC24A3Q9HC58 644 aa6.32□□□□□ -1.4
SNHG1-220ENST00000544550 CCDC9Q9Y3X0 531 aaKnown RBP6.32□□□□□ -1.4
SNHG1-220ENST00000544550 DISP2A7MBM2 1401 aa6.32□□□□□ -1.4
SNHG1-220ENST00000544550 PXDNQ92626 1479 aa6.31□□□□□ -1.4
SNHG1-220ENST00000544550 A0A0G2JS52 829 aa6.31□□□□□ -1.4
SNHG1-220ENST00000544550 MYT1Q01538 1121 aa6.31□□□□□ -1.4
SNHG1-220ENST00000544550 EN1Q05925 392 aaPredicted RBP6.31□□□□□ -1.4
SNHG1-220ENST00000544550 IQGAP3Q86VI3 1631 aa6.31□□□□□ -1.4
SNHG1-220ENST00000544550 NRXN3Q9Y4C0 1643 aa6.31□□□□□ -1.4
SNHG1-220ENST00000544550 HFM1A2PYH4 1435 aa6.31□□□□□ -1.4
SNHG1-220ENST00000544550 PRAG1Q86YV5 1406 aa6.31□□□□□ -1.4
SNHG1-220ENST00000544550 PARD3Q8TEW0 1356 aa6.31□□□□□ -1.4
SNHG1-220ENST00000544550 NALCNQ8IZF0 1738 aa6.3□□□□□ -1.4
SNHG1-220ENST00000544550 SENP3-EIF4A1A0A087X0R7 540 aa6.3□□□□□ -1.4
SNHG1-220ENST00000544550 GRXCR2A6NFK2 248 aa6.3□□□□□ -1.4
SNHG1-220ENST00000544550 EVI5O60447 810 aa6.3□□□□□ -1.4
SNHG1-220ENST00000544550 OSBPP22059 807 aa6.3□□□□□ -1.4
SNHG1-220ENST00000544550 ANO8Q9HCE9 1232 aaPredicted RBP6.3□□□□□ -1.4
SNHG1-220ENST00000544550 PPP1R1BQ9UD71 204 aaPredicted RBP6.3□□□□□ -1.4
SNHG1-220ENST00000544550 NINLQ9Y2I6 1382 aa6.3□□□□□ -1.4
SNHG1-220ENST00000544550 MYO5BQ9ULV0 1848 aa6.29□□□□□ -1.4
SNHG1-220ENST00000544550 GPR37O15354 613 aa6.29□□□□□ -1.4
SNHG1-220ENST00000544550 FOXO3O43524 673 aa6.29□□□□□ -1.4
SNHG1-220ENST00000544550 NBPF8Q3BBV2 869 aa6.29□□□□□ -1.4
SNHG1-220ENST00000544550 NBPF14Q5TI25 921 aa6.29□□□□□ -1.4
SNHG1-220ENST00000544550 ADGRD1Q6QNK2 874 aa6.29□□□□□ -1.4
SNHG1-220ENST00000544550 SPATA31A3Q5VYP0 1347 aa6.28□□□□□ -1.4
SNHG1-220ENST00000544550 MARF1Q9Y4F3 1742 aaKnown RBP6.28□□□□□ -1.4
SNHG1-220ENST00000544550 ADGRB2O60241 1585 aa6.28□□□□□ -1.4
SNHG1-220ENST00000544550 CCDC144AA2RUR9 1427 aa6.28□□□□□ -1.4
SNHG1-220ENST00000544550 EP400Q96L91 3159 aa6.28□□□□□ -1.4
SNHG1-220ENST00000544550 TK2O00142 265 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms