RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 H3BQV1 296 aa17.09■□□□□ 0.33
LIMS1-215ENST00000544547 HCLS1P14317 486 aaPredicted RBP17.09■□□□□ 0.33
LIMS1-215ENST00000544547 FOSBP53539 338 aa17.09■□□□□ 0.33
LIMS1-215ENST00000544547 IFFO2Q5TF58 517 aa17.09■□□□□ 0.33
LIMS1-215ENST00000544547 AEBP1Q8IUX7 1158 aa17.09■□□□□ 0.33
LIMS1-215ENST00000544547 SNX21Q969T3 373 aa17.09■□□□□ 0.33
LIMS1-215ENST00000544547 LMOD3Q0VAK6 560 aa17.09■□□□□ 0.33
LIMS1-215ENST00000544547 BMP2KLQ5H9B9 411 aa17.09■□□□□ 0.33
LIMS1-215ENST00000544547 PLCD3Q8N3E9 789 aa17.09■□□□□ 0.33
LIMS1-215ENST00000544547 COG3Q96JB2 828 aa17.09■□□□□ 0.33
LIMS1-215ENST00000544547 TPM3P06753 285 aa17.08■□□□□ 0.32
LIMS1-215ENST00000544547 FBLN1P23142 703 aa17.08■□□□□ 0.32
LIMS1-215ENST00000544547 ZGPATQ8N5A5 531 aaKnown RBP17.08■□□□□ 0.32
LIMS1-215ENST00000544547 A2MP01023 1474 aa17.08■□□□□ 0.32
LIMS1-215ENST00000544547 HDAC5Q9UQL6 1122 aa17.08■□□□□ 0.32
LIMS1-215ENST00000544547 ARHGEF12Q9NZN5 1544 aa17.07■□□□□ 0.32
LIMS1-215ENST00000544547 FAM184AQ8NB25 1140 aa17.07■□□□□ 0.32
LIMS1-215ENST00000544547 GNAI1P63096 354 aa17.07■□□□□ 0.32
LIMS1-215ENST00000544547 LARP6Q9BRS8 491 aaKnown RBP17.07■□□□□ 0.32
LIMS1-215ENST00000544547 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.07■□□□□ 0.32
LIMS1-215ENST00000544547 WDR33Q9C0J8 1336 aaKnown RBP17.07■□□□□ 0.32
LIMS1-215ENST00000544547 TWISTNBQ3B726 338 aaPredicted RBP17.07■□□□□ 0.32
LIMS1-215ENST00000544547 COL17A1Q9UMD9 1497 aaPredicted RBP17.07■□□□□ 0.32
LIMS1-215ENST00000544547 PRIMPOLQ96LW4 560 aa17.06■□□□□ 0.32
LIMS1-215ENST00000544547 USP19O94966 1318 aa17.06■□□□□ 0.32
LIMS1-215ENST00000544547 VGLL3A8MV65 326 aa17.06■□□□□ 0.32
LIMS1-215ENST00000544547 LETM1O95202 739 aaPredicted RBP17.06■□□□□ 0.32
LIMS1-215ENST00000544547 CCDC192P0DO97 292 aa17.06■□□□□ 0.32
LIMS1-215ENST00000544547 MCM2P49736 904 aa17.06■□□□□ 0.32
LIMS1-215ENST00000544547 SF3A1Q15459 793 aaKnown RBP17.06■□□□□ 0.32
LIMS1-215ENST00000544547 CAMK4Q16566 473 aa17.06■□□□□ 0.32
LIMS1-215ENST00000544547 SYCP2Q9BX26 1530 aa17.06■□□□□ 0.32
LIMS1-215ENST00000544547 MNS1Q8NEH6 495 aa17.06■□□□□ 0.32
LIMS1-215ENST00000544547 TPM4P67936 248 aa17.05■□□□□ 0.32
LIMS1-215ENST00000544547 TAF7LQ5H9L4 462 aa17.05■□□□□ 0.32
LIMS1-215ENST00000544547 RAPGEF3O95398 923 aa17.05■□□□□ 0.32
LIMS1-215ENST00000544547 FILIP1Q7Z7B0 1213 aa17.05■□□□□ 0.32
LIMS1-215ENST00000544547 GPS2Q13227 327 aa17.04■□□□□ 0.32
LIMS1-215ENST00000544547 HS1BP3Q53T59 392 aa17.04■□□□□ 0.32
LIMS1-215ENST00000544547 GPRASP1Q5JY77 1395 aa17.04■□□□□ 0.32
LIMS1-215ENST00000544547 ADGRL2O95490 1459 aa17.04■□□□□ 0.32
LIMS1-215ENST00000544547 CT47B1P0C2W7 299 aaPredicted RBP17.04■□□□□ 0.32
LIMS1-215ENST00000544547 NUCB1Q02818 461 aa17.04■□□□□ 0.32
LIMS1-215ENST00000544547 FMNL2Q96PY5 1086 aa17.04■□□□□ 0.32
LIMS1-215ENST00000544547 ITSN2Q9NZM3 1697 aa17.03■□□□□ 0.32
LIMS1-215ENST00000544547 HDAC1Q13547 482 aaPredicted RBP17.03■□□□□ 0.32
LIMS1-215ENST00000544547 MAP4K4O95819 1239 aaPredicted RBP17.03■□□□□ 0.32
LIMS1-215ENST00000544547 CEBPZQ03701 1054 aaKnown RBP17.03■□□□□ 0.32
LIMS1-215ENST00000544547 SKIDA1Q1XH10 827 aa17.03■□□□□ 0.32
LIMS1-215ENST00000544547 GOLGA6L1Q8N7Z2 621 aa17.03■□□□□ 0.32
LIMS1-215ENST00000544547 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.03■□□□□ 0.32
LIMS1-215ENST00000544547 ASXL1Q8IXJ9 1541 aa17.02■□□□□ 0.32
LIMS1-215ENST00000544547 CHAMP1Q96JM3 812 aa17.02■□□□□ 0.32
LIMS1-215ENST00000544547 TAF3Q5VWG9 929 aa17.02■□□□□ 0.32
LIMS1-215ENST00000544547 FERMT3Q86UX7 667 aa17.02■□□□□ 0.32
LIMS1-215ENST00000544547 TNNT1P13805 278 aa17.02■□□□□ 0.31
LIMS1-215ENST00000544547 CDK19Q9BWU1 502 aa17.02■□□□□ 0.31
LIMS1-215ENST00000544547 KDM5CP41229 1560 aa17.02■□□□□ 0.31
LIMS1-215ENST00000544547 ZKSCAN1P17029 563 aaPredicted RBP17.02■□□□□ 0.31
LIMS1-215ENST00000544547 GPATCH3Q96I76 525 aa17.02■□□□□ 0.31
LIMS1-215ENST00000544547 ARGLU1Q9NWB6 273 aaPredicted RBP17.02■□□□□ 0.31
LIMS1-215ENST00000544547 CCDC9Q9Y3X0 531 aaKnown RBP17.02■□□□□ 0.31
LIMS1-215ENST00000544547 KIF21AQ7Z4S6 1674 aa17.01■□□□□ 0.31
LIMS1-215ENST00000544547 U2AF2P26368 475 aaKnown RBP eCLIP17.01■□□□□ 0.31
LIMS1-215ENST00000544547 FKBP5Q13451 457 aaPredicted RBP17.01■□□□□ 0.31
LIMS1-215ENST00000544547 BCORL1Q5H9F3 1711 aa17.01■□□□□ 0.31
LIMS1-215ENST00000544547 DCTN1Q14203 1278 aa17■□□□□ 0.31
LIMS1-215ENST00000544547 GTPBP4Q9BZE4 634 aaKnown RBP17■□□□□ 0.31
LIMS1-215ENST00000544547 GIMAP6Q6P9H5 292 aa17■□□□□ 0.31
LIMS1-215ENST00000544547 PPP1R9BQ96SB3 815 aa17■□□□□ 0.31
LIMS1-215ENST00000544547 TNMDQ9H2S6 317 aa17■□□□□ 0.31
LIMS1-215ENST00000544547 NOL12Q9UGY1 213 aaKnown RBP eCLIP17■□□□□ 0.31
LIMS1-215ENST00000544547 V9GYY5 206 aaPredicted RBP17■□□□□ 0.31
LIMS1-215ENST00000544547 BLMP54132 1417 aaPredicted RBP17■□□□□ 0.31
LIMS1-215ENST00000544547 CCDC183Q5T5S1 534 aa17■□□□□ 0.31
LIMS1-215ENST00000544547 NOS1P29475 1434 aa16.99■□□□□ 0.31
LIMS1-215ENST00000544547 RRS1Q15050 365 aaKnown RBP16.99■□□□□ 0.31
LIMS1-215ENST00000544547 CREBRFQ8IUR6 639 aa16.99■□□□□ 0.31
LIMS1-215ENST00000544547 C16orf71Q8IYS4 520 aaPredicted RBP16.99■□□□□ 0.31
LIMS1-215ENST00000544547 TRMT1Q9NXH9 659 aaKnown RBP16.99■□□□□ 0.31
LIMS1-215ENST00000544547 EXOC6BQ9Y2D4 811 aa16.99■□□□□ 0.31
LIMS1-215ENST00000544547 TSHZ3Q63HK5 1081 aa16.98■□□□□ 0.31
LIMS1-215ENST00000544547 DDX54Q8TDD1 881 aaKnown RBP16.98■□□□□ 0.31
LIMS1-215ENST00000544547 CKAP2LQ8IYA6 745 aa16.98■□□□□ 0.31
LIMS1-215ENST00000544547 TRAPPC8Q9Y2L5 1435 aa16.98■□□□□ 0.31
LIMS1-215ENST00000544547 RBM25P49756 843 aaKnown RBP16.98■□□□□ 0.31
LIMS1-215ENST00000544547 CYB5RLQ6IPT4 315 aa16.98■□□□□ 0.31
LIMS1-215ENST00000544547 ZMYM4Q5VZL5 1548 aa16.98■□□□□ 0.31
LIMS1-215ENST00000544547 TERF1P54274 439 aa16.97■□□□□ 0.31
LIMS1-215ENST00000544547 FAM177A1Q8N128 213 aaPredicted RBP16.97■□□□□ 0.31
LIMS1-215ENST00000544547 TMX3Q96JJ7 454 aa16.97■□□□□ 0.31
LIMS1-215ENST00000544547 CLSTN1O94985 981 aa16.97■□□□□ 0.31
LIMS1-215ENST00000544547 PKP1Q13835 747 aa16.97■□□□□ 0.31
LIMS1-215ENST00000544547 POLR3GO15318 223 aaPredicted RBP16.96■□□□□ 0.31
LIMS1-215ENST00000544547 GTF2F1P35269 517 aaKnown RBP eCLIP16.96■□□□□ 0.31
LIMS1-215ENST00000544547 NUP62CLQ9H1M0 184 aa16.96■□□□□ 0.31
LIMS1-215ENST00000544547 ZNF445P59923 1031 aa16.96■□□□□ 0.3
LIMS1-215ENST00000544547 SDF4Q9BRK5 362 aa16.96■□□□□ 0.3
LIMS1-215ENST00000544547 SHANK2Q9UPX8 1470 aa16.95■□□□□ 0.3
LIMS1-215ENST00000544547 WAPLQ7Z5K2 1190 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms