RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	PDE3B	Q13370	1112 aa		12.93	□□□□□ -0.34
YBX3-215	ENST00000544504	RALBP1	Q15311	655 aa		12.93	□□□□□ -0.34
YBX3-215	ENST00000544504	CPSF1	Q10570	1443 aa	Known RBP	12.93	□□□□□ -0.34
YBX3-215	ENST00000544504	EDC4	Q6P2E9	1401 aa	Known RBP	12.93	□□□□□ -0.34
YBX3-215	ENST00000544504	NSD3	Q9BZ95	1437 aa		12.93	□□□□□ -0.34
YBX3-215	ENST00000544504	RGPD8	O14715	1765 aa	Predicted RBP	12.92	□□□□□ -0.34
YBX3-215	ENST00000544504	NUP188	Q5SRE5	1749 aa		12.92	□□□□□ -0.34
YBX3-215	ENST00000544504	NGDN	Q8NEJ9	315 aa	Known RBP	12.92	□□□□□ -0.34
YBX3-215	ENST00000544504	POLR3A	O14802	1390 aa	Predicted RBP	12.92	□□□□□ -0.34
YBX3-215	ENST00000544504	CD163L1	Q9NR16	1453 aa		12.91	□□□□□ -0.34
YBX3-215	ENST00000544504	TRPM3	Q9HCF6	1732 aa	Predicted RBP	12.91	□□□□□ -0.34
YBX3-215	ENST00000544504	BARGIN	Q6ZT62	677 aa		12.91	□□□□□ -0.34
YBX3-215	ENST00000544504	CARD14	Q9BXL6	1004 aa		12.91	□□□□□ -0.34
YBX3-215	ENST00000544504	PRKRIP1	Q9H875	184 aa	Predicted RBP	12.91	□□□□□ -0.34
YBX3-215	ENST00000544504	ACE	P12821	1306 aa		12.9	□□□□□ -0.34
YBX3-215	ENST00000544504	ALS2	Q96Q42	1657 aa		12.9	□□□□□ -0.34
YBX3-215	ENST00000544504	AKAP12	Q02952	1782 aa		12.9	□□□□□ -0.34
YBX3-215	ENST00000544504	AMER1	Q5JTC6	1135 aa	Predicted RBP	12.9	□□□□□ -0.34
YBX3-215	ENST00000544504	STRN4	Q9NRL3	753 aa		12.9	□□□□□ -0.34
YBX3-215	ENST00000544504	KIAA0232	Q92628	1395 aa		12.9	□□□□□ -0.34
YBX3-215	ENST00000544504	MON2	Q7Z3U7	1717 aa		12.89	□□□□□ -0.35
YBX3-215	ENST00000544504	CCER2	I3L3R5	266 aa		12.89	□□□□□ -0.35
YBX3-215	ENST00000544504	C1QTNF8	P60827	252 aa		12.89	□□□□□ -0.35
YBX3-215	ENST00000544504	MIER1	Q8N108	512 aa		12.89	□□□□□ -0.35
YBX3-215	ENST00000544504	USP35	Q9P2H5	1018 aa		12.89	□□□□□ -0.35
YBX3-215	ENST00000544504	TTC21A	Q8NDW8	1320 aa		12.88	□□□□□ -0.35
YBX3-215	ENST00000544504	USP6	P35125	1406 aa		12.88	□□□□□ -0.35
YBX3-215	ENST00000544504	PAK3	O75914	559 aa	Predicted RBP	12.88	□□□□□ -0.35
YBX3-215	ENST00000544504	CAMTA1	Q9Y6Y1	1673 aa		12.87	□□□□□ -0.35
YBX3-215	ENST00000544504	GOLGB1	Q14789	3259 aa	Known RBP	12.87	□□□□□ -0.35
YBX3-215	ENST00000544504	CHRNA2	Q15822	529 aa		12.87	□□□□□ -0.35
YBX3-215	ENST00000544504	MYBBP1A	Q9BQG0	1328 aa	Known RBP	12.87	□□□□□ -0.35
YBX3-215	ENST00000544504	EVA1C	P58658	441 aa		12.86	□□□□□ -0.35
YBX3-215	ENST00000544504	CC2D1B	Q5T0F9	858 aa	Known RBP	12.86	□□□□□ -0.35
YBX3-215	ENST00000544504	SSH2	Q76I76	1423 aa		12.86	□□□□□ -0.35
YBX3-215	ENST00000544504	CRYBG1	Q9Y4K1	1723 aa		12.85	□□□□□ -0.35
YBX3-215	ENST00000544504	PLSCR1	O15162	318 aa		12.85	□□□□□ -0.35
YBX3-215	ENST00000544504	MORC1	Q86VD1	984 aa		12.85	□□□□□ -0.35
YBX3-215	ENST00000544504	TCP11L2	Q8N4U5	519 aa		12.85	□□□□□ -0.35
YBX3-215	ENST00000544504	TTC21B	Q7Z4L5	1316 aa		12.85	□□□□□ -0.35
YBX3-215	ENST00000544504	KIF20B	Q96Q89	1820 aa		12.84	□□□□□ -0.35
YBX3-215	ENST00000544504	ZC3H6	P61129	1189 aa	Known RBP	12.84	□□□□□ -0.35
YBX3-215	ENST00000544504	THRAP3	Q9Y2W1	955 aa	Known RBP	12.84	□□□□□ -0.35
YBX3-215	ENST00000544504	NRK	Q7Z2Y5	1582 aa		12.84	□□□□□ -0.35
YBX3-215	ENST00000544504	ANKRD26	Q9UPS8	1709 aa		12.84	□□□□□ -0.35
YBX3-215	ENST00000544504	FYB1	O15117	783 aa		12.83	□□□□□ -0.36
YBX3-215	ENST00000544504	NLRP13	Q86W25	1043 aa		12.83	□□□□□ -0.36
YBX3-215	ENST00000544504	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
YBX3-215	ENST00000544504	COG3	Q96JB2	828 aa		12.83	□□□□□ -0.36
YBX3-215	ENST00000544504	ZBTB7A	O95365	584 aa		12.82	□□□□□ -0.36
YBX3-215	ENST00000544504	PTGER2	P43116	358 aa		12.82	□□□□□ -0.36
YBX3-215	ENST00000544504	LARP1	Q6PKG0	1096 aa	Known RBP	12.82	□□□□□ -0.36
YBX3-215	ENST00000544504	ANO8	Q9HCE9	1232 aa	Predicted RBP	12.82	□□□□□ -0.36
YBX3-215	ENST00000544504	OVOS2	A0A0G2JMS6	1433 aa		12.81	□□□□□ -0.36
YBX3-215	ENST00000544504	OVOS2	A0A0J9YW53	1432 aa		12.81	□□□□□ -0.36
YBX3-215	ENST00000544504	OVOS2	Q6IE36	1432 aa		12.81	□□□□□ -0.36
YBX3-215	ENST00000544504	CNGB1	Q14028	1251 aa	Predicted RBP	12.81	□□□□□ -0.36
YBX3-215	ENST00000544504	SYT17	Q9BSW7	474 aa		12.81	□□□□□ -0.36
YBX3-215	ENST00000544504	USP31	Q70CQ4	1352 aa		12.81	□□□□□ -0.36
YBX3-215	ENST00000544504	RGPD3	A6NKT7	1758 aa	Predicted RBP	12.8	□□□□□ -0.36
YBX3-215	ENST00000544504	RGPD4	Q7Z3J3	1758 aa		12.8	□□□□□ -0.36
YBX3-215	ENST00000544504	CASZ1	Q86V15	1759 aa		12.8	□□□□□ -0.36
YBX3-215	ENST00000544504	FHDC1	Q9C0D6	1143 aa	Predicted RBP	12.8	□□□□□ -0.36
YBX3-215	ENST00000544504	BCL11B	Q9C0K0	894 aa	Predicted RBP	12.8	□□□□□ -0.36
YBX3-215	ENST00000544504	PDGFD	Q9GZP0	370 aa	Predicted RBP	12.8	□□□□□ -0.36
YBX3-215	ENST00000544504	GGNBP2	Q9H3C7	697 aa		12.8	□□□□□ -0.36
YBX3-215	ENST00000544504	NME9	Q86XW9	330 aa		12.79	□□□□□ -0.36
YBX3-215	ENST00000544504	PHRF1	Q9P1Y6	1649 aa	Known RBP	12.79	□□□□□ -0.36
YBX3-215	ENST00000544504	CPD	O75976	1380 aa		12.79	□□□□□ -0.36
YBX3-215	ENST00000544504	PPP2R1A	P30153	589 aa		12.78	□□□□□ -0.36
YBX3-215	ENST00000544504	ABTB2	Q8N961	1025 aa		12.78	□□□□□ -0.36
YBX3-215	ENST00000544504	MRS2	Q9HD23	443 aa		12.78	□□□□□ -0.36
YBX3-215	ENST00000544504	ATF5	Q9Y2D1	282 aa	Predicted RBP	12.78	□□□□□ -0.36
YBX3-215	ENST00000544504	USP54	Q70EL1	1684 aa		12.77	□□□□□ -0.36
YBX3-215	ENST00000544504	GIGYF1	O75420	1035 aa	Predicted RBP	12.77	□□□□□ -0.37
YBX3-215	ENST00000544504	NLRP6	P59044	892 aa		12.77	□□□□□ -0.37
YBX3-215	ENST00000544504	NUTM2G	Q5VZR2	741 aa		12.77	□□□□□ -0.37
YBX3-215	ENST00000544504	CFAP53	Q96M91	514 aa		12.77	□□□□□ -0.37
YBX3-215	ENST00000544504	AATK	Q6ZMQ8	1374 aa		12.77	□□□□□ -0.37
YBX3-215	ENST00000544504	PARP4	Q9UKK3	1724 aa	Known RBP	12.76	□□□□□ -0.37
YBX3-215	ENST00000544504	PROM2	Q8N271	834 aa		12.76	□□□□□ -0.37
YBX3-215	ENST00000544504	MTFR1L	Q9H019	292 aa		12.76	□□□□□ -0.37
YBX3-215	ENST00000544504	STK32B	Q9NY57	414 aa		12.76	□□□□□ -0.37
YBX3-215	ENST00000544504	PIK3C2A	O00443	1686 aa		12.76	□□□□□ -0.37
YBX3-215	ENST00000544504	DDB1	Q16531	1140 aa		12.75	□□□□□ -0.37
YBX3-215	ENST00000544504	KCNH5	Q8NCM2	988 aa		12.75	□□□□□ -0.37
YBX3-215	ENST00000544504	LMO7	Q8WWI1	1683 aa		12.75	□□□□□ -0.37
YBX3-215	ENST00000544504	PEAK1	Q9H792	1746 aa		12.75	□□□□□ -0.37
YBX3-215	ENST00000544504	COL5A2	P05997	1499 aa	Predicted RBP	12.74	□□□□□ -0.37
YBX3-215	ENST00000544504	CRB1	P82279	1406 aa		12.74	□□□□□ -0.37
YBX3-215	ENST00000544504	MAP3K5	Q99683	1374 aa		12.74	□□□□□ -0.37
YBX3-215	ENST00000544504	SLC15A2	Q16348	729 aa		12.74	□□□□□ -0.37
YBX3-215	ENST00000544504	SGIP1	Q9BQI5	828 aa		12.74	□□□□□ -0.37
YBX3-215	ENST00000544504	BCL9	O00512	1426 aa		12.73	□□□□□ -0.37
YBX3-215	ENST00000544504	USP19	O94966	1318 aa		12.73	□□□□□ -0.37
YBX3-215	ENST00000544504	TNNT2	P45379	298 aa	Predicted RBP	12.73	□□□□□ -0.37
YBX3-215	ENST00000544504	PTF1A	Q7RTS3	328 aa		12.73	□□□□□ -0.37
YBX3-215	ENST00000544504	ARX	Q96QS3	562 aa		12.73	□□□□□ -0.37
YBX3-215	ENST00000544504	KIF24	Q5T7B8	1368 aa		12.72	□□□□□ -0.37
YBX3-215	ENST00000544504	GC	P02774	474 aa		12.72	□□□□□ -0.37

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