RNA–Protein interactions for RNA: ENST00000542953.1

NPIPB3-211, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 4

Gene NPIPB3, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-211ENST00000542953 KIF1AQ12756 1690 aa7.52□□□□□ -1.21
NPIPB3-211ENST00000542953 CAMTA1Q9Y6Y1 1673 aa7.52□□□□□ -1.21
NPIPB3-211ENST00000542953 ZNF326Q5BKZ1 582 aaKnown RBP7.52□□□□□ -1.21
NPIPB3-211ENST00000542953 KLHL34Q8N239 644 aa7.52□□□□□ -1.21
NPIPB3-211ENST00000542953 NUP188Q5SRE5 1749 aa7.52□□□□□ -1.21
NPIPB3-211ENST00000542953 SPATA31A5Q5VU36 1347 aa7.52□□□□□ -1.21
NPIPB3-211ENST00000542953 SPATA31A7Q8IWB4 1347 aa7.52□□□□□ -1.21
NPIPB3-211ENST00000542953 SBNO1A3KN83 1393 aa7.51□□□□□ -1.21
NPIPB3-211ENST00000542953 A0A0G2JS52 829 aa7.51□□□□□ -1.21
NPIPB3-211ENST00000542953 FAM83GA6ND36 823 aa7.51□□□□□ -1.21
NPIPB3-211ENST00000542953 MYT1Q01538 1121 aa7.51□□□□□ -1.21
NPIPB3-211ENST00000542953 FAM182BQ5T319 152 aa7.51□□□□□ -1.21
NPIPB3-211ENST00000542953 ABCA3Q99758 1704 aa7.51□□□□□ -1.21
NPIPB3-211ENST00000542953 TECPR2O15040 1411 aa7.51□□□□□ -1.21
NPIPB3-211ENST00000542953 ARHGEF10O15013 1369 aa7.5□□□□□ -1.21
NPIPB3-211ENST00000542953 G3V3G9 751 aa7.5□□□□□ -1.21
NPIPB3-211ENST00000542953 TRIM37O94972 964 aa7.5□□□□□ -1.21
NPIPB3-211ENST00000542953 PDAP1Q13442 181 aaKnown RBP7.5□□□□□ -1.21
NPIPB3-211ENST00000542953 NBPF8Q3BBV2 869 aa7.5□□□□□ -1.21
NPIPB3-211ENST00000542953 NBPF14Q5TI25 921 aa7.5□□□□□ -1.21
NPIPB3-211ENST00000542953 FAM196AQ6ZSG2 479 aa7.5□□□□□ -1.21
NPIPB3-211ENST00000542953 KRT28Q7Z3Y7 464 aa7.5□□□□□ -1.21
NPIPB3-211ENST00000542953 CABLES1Q8TDN4 633 aa7.5□□□□□ -1.21
NPIPB3-211ENST00000542953 RRBP1Q9P2E9 1410 aaKnown RBP7.5□□□□□ -1.21
NPIPB3-211ENST00000542953 NUP155O75694 1391 aa7.49□□□□□ -1.21
NPIPB3-211ENST00000542953 ROCK1Q13464 1354 aa7.49□□□□□ -1.21
NPIPB3-211ENST00000542953 APBA3O96018 575 aa7.49□□□□□ -1.21
NPIPB3-211ENST00000542953 HAP1P54257 671 aaPredicted RBP7.49□□□□□ -1.21
NPIPB3-211ENST00000542953 CLTCL1P53675 1640 aa7.49□□□□□ -1.21
NPIPB3-211ENST00000542953 VGFO15240 615 aaPredicted RBP7.48□□□□□ -1.21
NPIPB3-211ENST00000542953 VASPP50552 380 aaPredicted RBP7.48□□□□□ -1.21
NPIPB3-211ENST00000542953 BTG4Q9NY30 223 aa7.48□□□□□ -1.21
NPIPB3-211ENST00000542953 BOLA1Q9Y3E2 137 aa7.48□□□□□ -1.21
NPIPB3-211ENST00000542953 COL14A1Q05707 1796 aaKnown RBP7.48□□□□□ -1.21
NPIPB3-211ENST00000542953 FMN2Q9NZ56 1722 aa7.47□□□□□ -1.21
NPIPB3-211ENST00000542953 NRKQ7Z2Y5 1582 aa7.47□□□□□ -1.21
NPIPB3-211ENST00000542953 HOXB3P14651 431 aaPredicted RBP7.47□□□□□ -1.21
NPIPB3-211ENST00000542953 HOXB1P14653 301 aaPredicted RBP7.47□□□□□ -1.21
NPIPB3-211ENST00000542953 PSME1Q06323 249 aa7.47□□□□□ -1.21
NPIPB3-211ENST00000542953 ZNF710Q8N1W2 664 aa7.47□□□□□ -1.21
NPIPB3-211ENST00000542953 NRXN1Q9ULB1 1477 aa7.47□□□□□ -1.21
NPIPB3-211ENST00000542953 CASZ1Q86V15 1759 aa7.46□□□□□ -1.21
NPIPB3-211ENST00000542953 GOLGB1Q14789 3259 aaKnown RBP7.46□□□□□ -1.21
NPIPB3-211ENST00000542953 LOC105371045A0A1W2PR82 267 aa7.46□□□□□ -1.22
NPIPB3-211ENST00000542953 NUTM2FA1L443 756 aa7.46□□□□□ -1.22
NPIPB3-211ENST00000542953 PTGER2P43116 358 aa7.46□□□□□ -1.22
NPIPB3-211ENST00000542953 DOK7Q18PE1 504 aa7.46□□□□□ -1.22
NPIPB3-211ENST00000542953 SPATA31A1Q5TZJ5 1347 aa7.46□□□□□ -1.22
NPIPB3-211ENST00000542953 RPGRIP1LQ68CZ1 1315 aa7.46□□□□□ -1.22
NPIPB3-211ENST00000542953 ABCC11Q96J66 1382 aa7.46□□□□□ -1.22
NPIPB3-211ENST00000542953 GIGYF1O75420 1035 aaPredicted RBP7.45□□□□□ -1.22
NPIPB3-211ENST00000542953 DPY19L2Q6NUT2 758 aa7.45□□□□□ -1.22
NPIPB3-211ENST00000542953 PHF8Q9UPP1 1060 aa7.45□□□□□ -1.22
NPIPB3-211ENST00000542953 RIMBP2O15034 1052 aa7.44□□□□□ -1.22
NPIPB3-211ENST00000542953 WAPLQ7Z5K2 1190 aa7.44□□□□□ -1.22
NPIPB3-211ENST00000542953 SYT17Q9BSW7 474 aa7.44□□□□□ -1.22
NPIPB3-211ENST00000542953 CABP2Q9NPB3 220 aa7.44□□□□□ -1.22
NPIPB3-211ENST00000542953 CHD4Q14839 1912 aa7.44□□□□□ -1.22
NPIPB3-211ENST00000542953 MYOM1P52179 1685 aa7.44□□□□□ -1.22
NPIPB3-211ENST00000542953 MAP3K5Q99683 1374 aa7.44□□□□□ -1.22
NPIPB3-211ENST00000542953 PLEKHH1Q9ULM0 1364 aa7.44□□□□□ -1.22
NPIPB3-211ENST00000542953 RGPD3A6NKT7 1758 aaPredicted RBP7.43□□□□□ -1.22
NPIPB3-211ENST00000542953 RGPD4Q7Z3J3 1758 aa7.43□□□□□ -1.22
NPIPB3-211ENST00000542953 FAM50AQ14320 339 aaKnown RBP7.43□□□□□ -1.22
NPIPB3-211ENST00000542953 BARGINQ6ZT62 677 aa7.43□□□□□ -1.22
NPIPB3-211ENST00000542953 ANO8Q9HCE9 1232 aaPredicted RBP7.43□□□□□ -1.22
NPIPB3-211ENST00000542953 ERBB3P21860 1342 aa7.43□□□□□ -1.22
NPIPB3-211ENST00000542953 KNDC1Q76NI1 1749 aa7.43□□□□□ -1.22
NPIPB3-211ENST00000542953 DLC1Q96QB1 1528 aa7.42□□□□□ -1.22
NPIPB3-211ENST00000542953 TRPM3Q9HCF6 1732 aaPredicted RBP7.42□□□□□ -1.22
NPIPB3-211ENST00000542953 PLSCR1O15162 318 aa7.42□□□□□ -1.22
NPIPB3-211ENST00000542953 FHDC1Q9C0D6 1143 aaPredicted RBP7.42□□□□□ -1.22
NPIPB3-211ENST00000542953 ALS2Q96Q42 1657 aa7.41□□□□□ -1.22
NPIPB3-211ENST00000542953 KIF1BO60333 1816 aa7.41□□□□□ -1.22
NPIPB3-211ENST00000542953 C11orf95C9JLR9 678 aaPredicted RBP7.41□□□□□ -1.22
NPIPB3-211ENST00000542953 LMOD2Q6P5Q4 547 aa7.41□□□□□ -1.22
NPIPB3-211ENST00000542953 RNF166Q96A37 237 aaPredicted RBP7.41□□□□□ -1.22
NPIPB3-211ENST00000542953 SIRT1Q96EB6 747 aa7.41□□□□□ -1.22
NPIPB3-211ENST00000542953 PDGFDQ9GZP0 370 aaPredicted RBP7.41□□□□□ -1.22
NPIPB3-211ENST00000542953 ANKARQ7Z5J8 1434 aa7.41□□□□□ -1.22
NPIPB3-211ENST00000542953 CRYBG1Q9Y4K1 1723 aa7.41□□□□□ -1.22
NPIPB3-211ENST00000542953 PPLO60437 1756 aa7.41□□□□□ -1.22
NPIPB3-211ENST00000542953 ZBTB7AO95365 584 aa7.4□□□□□ -1.22
NPIPB3-211ENST00000542953 PDE3BQ13370 1112 aa7.4□□□□□ -1.22
NPIPB3-211ENST00000542953 PRDM11Q9NQV5 511 aa7.4□□□□□ -1.22
NPIPB3-211ENST00000542953 SHANK3Q9BYB0 1731 aa7.4□□□□□ -1.23
NPIPB3-211ENST00000542953 IFT172Q9UG01 1749 aa7.39□□□□□ -1.23
NPIPB3-211ENST00000542953 SSH2Q76I76 1423 aa7.39□□□□□ -1.23
NPIPB3-211ENST00000542953 MTFR1LQ9H019 292 aa7.39□□□□□ -1.23
NPIPB3-211ENST00000542953 ZSWIM6Q9HCJ5 1215 aa7.39□□□□□ -1.23
NPIPB3-211ENST00000542953 STK26Q9P289 416 aa7.39□□□□□ -1.23
NPIPB3-211ENST00000542953 PEAK1Q9H792 1746 aa7.38□□□□□ -1.23
NPIPB3-211ENST00000542953 YTHDC2Q9H6S0 1430 aaKnown RBP7.38□□□□□ -1.23
NPIPB3-211ENST00000542953 KIAA0232Q92628 1395 aa7.38□□□□□ -1.23
NPIPB3-211ENST00000542953 ADGRF5Q8IZF2 1346 aa7.38□□□□□ -1.23
NPIPB3-211ENST00000542953 OVOS2A0A0G2JMS6 1433 aa7.37□□□□□ -1.23
NPIPB3-211ENST00000542953 OVOS2A0A0J9YW53 1432 aa7.37□□□□□ -1.23
NPIPB3-211ENST00000542953 PIK3C2GO75747 1445 aa7.37□□□□□ -1.23
NPIPB3-211ENST00000542953 OVOS2Q6IE36 1432 aa7.37□□□□□ -1.23
NPIPB3-211ENST00000542953 GPRASP1Q5JY77 1395 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms