RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 SMCPP49901 116 aaPredicted RBP12.9□□□□□ -0.34
YBX3-210ENST00000540975 CTC1Q2NKJ3 1217 aa12.9□□□□□ -0.34
YBX3-210ENST00000540975 FSHRP23945 695 aa12.89□□□□□ -0.35
YBX3-210ENST00000540975 MCCD1P59942 119 aaPredicted RBP12.89□□□□□ -0.35
YBX3-210ENST00000540975 WASHC4Q2M389 1173 aa12.89□□□□□ -0.35
YBX3-210ENST00000540975 CRIPAKQ8N1N5 446 aa12.89□□□□□ -0.35
YBX3-210ENST00000540975 AAASQ9NRG9 546 aa12.89□□□□□ -0.35
YBX3-210ENST00000540975 AXIN1O15169 862 aa12.88□□□□□ -0.35
YBX3-210ENST00000540975 VAC14Q08AM6 782 aa12.88□□□□□ -0.35
YBX3-210ENST00000540975 KLF16Q9BXK1 252 aaPredicted RBP12.88□□□□□ -0.35
YBX3-210ENST00000540975 ST8SIA5O15466 376 aa12.87□□□□□ -0.35
YBX3-210ENST00000540975 NBPF20Q3BBV1 942 aa12.87□□□□□ -0.35
YBX3-210ENST00000540975 CLUAP1Q96AJ1 413 aa12.86□□□□□ -0.35
YBX3-210ENST00000540975 ESPNB1AK53 854 aa12.85□□□□□ -0.35
YBX3-210ENST00000540975 EIF4G2P78344 907 aaKnown RBP eCLIP12.85□□□□□ -0.35
YBX3-210ENST00000540975 INTS6LQ5JSJ4 861 aaKnown RBP12.85□□□□□ -0.35
YBX3-210ENST00000540975 CCDC116Q8IYX3 515 aa12.85□□□□□ -0.35
YBX3-210ENST00000540975 ZNF592Q92610 1267 aa12.85□□□□□ -0.35
YBX3-210ENST00000540975 CAPN5O15484 640 aaPredicted RBP12.84□□□□□ -0.35
YBX3-210ENST00000540975 GIGYF1O75420 1035 aaPredicted RBP12.84□□□□□ -0.35
YBX3-210ENST00000540975 WDR4P57081 412 aaKnown RBP12.84□□□□□ -0.35
YBX3-210ENST00000540975 TIMP2P16035 220 aa12.83□□□□□ -0.36
YBX3-210ENST00000540975 WWC1Q8IX03 1113 aa12.83□□□□□ -0.36
YBX3-210ENST00000540975 PPP1R26Q5T8A7 1209 aaPredicted RBP12.82□□□□□ -0.36
YBX3-210ENST00000540975 ITPKCQ96DU7 683 aa12.82□□□□□ -0.36
YBX3-210ENST00000540975 CEP126Q9P2H0 1117 aa12.82□□□□□ -0.36
YBX3-210ENST00000540975 DACH1Q9UI36 760 aa12.82□□□□□ -0.36
YBX3-210ENST00000540975 ZIC2O95409 532 aaPredicted RBP12.81□□□□□ -0.36
YBX3-210ENST00000540975 EMILIN1Q9Y6C2 1016 aa12.81□□□□□ -0.36
YBX3-210ENST00000540975 RAB15P59190 212 aa12.8□□□□□ -0.36
YBX3-210ENST00000540975 DHX9Q08211 1270 aaKnown RBP12.8□□□□□ -0.36
YBX3-210ENST00000540975 SEPT12Q8IYM1 358 aa12.8□□□□□ -0.36
YBX3-210ENST00000540975 ZFAND3Q9H8U3 227 aa12.8□□□□□ -0.36
YBX3-210ENST00000540975 A6NJR5 290 aa12.79□□□□□ -0.36
YBX3-210ENST00000540975 ERVH48-1M5A8F1 160 aa12.79□□□□□ -0.36
YBX3-210ENST00000540975 FNBP4Q8N3X1 1017 aaPredicted RBP12.79□□□□□ -0.36
YBX3-210ENST00000540975 SEMA3FQ13275 785 aa12.77□□□□□ -0.37
YBX3-210ENST00000540975 RNF20Q5VTR2 975 aa12.77□□□□□ -0.37
YBX3-210ENST00000540975 TMPRSS4Q9NRS4 437 aa12.77□□□□□ -0.37
YBX3-210ENST00000540975 PGPEP1Q9NXJ5 209 aa12.77□□□□□ -0.37
YBX3-210ENST00000540975 SOX11P35716 441 aa12.76□□□□□ -0.37
YBX3-210ENST00000540975 PROSER2Q86WR7 435 aaPredicted RBP12.76□□□□□ -0.37
YBX3-210ENST00000540975 CCDC125Q86Z20 511 aa12.76□□□□□ -0.37
YBX3-210ENST00000540975 ALG2Q9H553 416 aa12.75□□□□□ -0.37
YBX3-210ENST00000540975 PHTF2Q8N3S3 785 aa12.74□□□□□ -0.37
YBX3-210ENST00000540975 ATP13A2Q9NQ11 1180 aa12.74□□□□□ -0.37
YBX3-210ENST00000540975 POM121CA8CG34 1229 aa12.73□□□□□ -0.37
YBX3-210ENST00000540975 TRIM46Q7Z4K8 759 aa12.72□□□□□ -0.37
YBX3-210ENST00000540975 ZNF784Q8NCA9 323 aaPredicted RBP12.72□□□□□ -0.37
YBX3-210ENST00000540975 LILRA1O75019 489 aa12.71□□□□□ -0.37
YBX3-210ENST00000540975 CBLBQ13191 982 aa12.71□□□□□ -0.37
YBX3-210ENST00000540975 Q6ZVU0 165 aa12.71□□□□□ -0.37
YBX3-210ENST00000540975 POTECB2RU33 542 aa12.7□□□□□ -0.38
YBX3-210ENST00000540975 BMP1P13497 986 aa12.7□□□□□ -0.38
YBX3-210ENST00000540975 TSGA10IPQ3SY00 556 aa12.7□□□□□ -0.38
YBX3-210ENST00000540975 SLFNL1Q499Z3 407 aa12.7□□□□□ -0.38
YBX3-210ENST00000540975 ADD1P35611 737 aaKnown RBP12.69□□□□□ -0.38
YBX3-210ENST00000540975 HDGFL1Q5TGJ6 251 aa12.69□□□□□ -0.38
YBX3-210ENST00000540975 MRPL14Q6P1L8 145 aaKnown RBP12.69□□□□□ -0.38
YBX3-210ENST00000540975 CCDC85AQ96PX6 553 aaPredicted RBP12.69□□□□□ -0.38
YBX3-210ENST00000540975 GMPR2Q9P2T1 348 aaKnown RBP12.69□□□□□ -0.38
YBX3-210ENST00000540975 MEIOBQ8N635 442 aa12.68□□□□□ -0.38
YBX3-210ENST00000540975 ADAMTS19Q8TE59 1207 aa12.68□□□□□ -0.38
YBX3-210ENST00000540975 ZMYND15Q9H091 742 aa12.68□□□□□ -0.38
YBX3-210ENST00000540975 PCDHB11Q9Y5F2 797 aa12.68□□□□□ -0.38
YBX3-210ENST00000540975 ZNF787Q6DD87 383 aa12.67□□□□□ -0.38
YBX3-210ENST00000540975 RNF135Q8IUD6 432 aa12.67□□□□□ -0.38
YBX3-210ENST00000540975 TRIM52Q96A61 297 aa12.67□□□□□ -0.38
YBX3-210ENST00000540975 CYLDQ9NQC7 956 aa12.67□□□□□ -0.38
YBX3-210ENST00000540975 CHIC2Q9UKJ5 165 aa12.67□□□□□ -0.38
YBX3-210ENST00000540975 TRAK2O60296 914 aa12.66□□□□□ -0.38
YBX3-210ENST00000540975 ERVK-9P63128 1117 aa12.65□□□□□ -0.38
YBX3-210ENST00000540975 SCARF1Q14162 830 aa12.65□□□□□ -0.38
YBX3-210ENST00000540975 ZFP42Q96MM3 310 aa12.65□□□□□ -0.38
YBX3-210ENST00000540975 TSEN34Q9BSV6 310 aaKnown RBP12.65□□□□□ -0.38
YBX3-210ENST00000540975 CDCA7Q9BWT1 371 aaPredicted RBP12.65□□□□□ -0.38
YBX3-210ENST00000540975 PURBQ96QR8 312 aaKnown RBP12.64□□□□□ -0.39
YBX3-210ENST00000540975 SENP2Q9HC62 589 aa12.64□□□□□ -0.39
YBX3-210ENST00000540975 UPP2O95045 317 aa12.63□□□□□ -0.39
YBX3-210ENST00000540975 SCTRP47872 440 aa12.63□□□□□ -0.39
YBX3-210ENST00000540975 CC2D2BQ6DHV5 1058 aa12.63□□□□□ -0.39
YBX3-210ENST00000540975 LINC00528Q8N1L1 170 aa12.63□□□□□ -0.39
YBX3-210ENST00000540975 AGBL1Q96MI9 1066 aa12.63□□□□□ -0.39
YBX3-210ENST00000540975 PIK3CDO00329 1044 aa12.62□□□□□ -0.39
YBX3-210ENST00000540975 C11orf95C9JLR9 678 aaPredicted RBP12.61□□□□□ -0.39
YBX3-210ENST00000540975 BMP2P12643 396 aa12.61□□□□□ -0.39
YBX3-210ENST00000540975 C6orf118Q5T5N4 469 aa12.61□□□□□ -0.39
YBX3-210ENST00000540975 KDF1Q8NAX2 398 aaPredicted RBP12.61□□□□□ -0.39
YBX3-210ENST00000540975 TRIM47Q96LD4 638 aa12.61□□□□□ -0.39
YBX3-210ENST00000540975 ZNF777Q9ULD5 760 aaPredicted RBP12.61□□□□□ -0.39
YBX3-210ENST00000540975 DOLKQ9UPQ8 538 aa12.61□□□□□ -0.39
YBX3-210ENST00000540975 ADH1AP07327 375 aa12.6□□□□□ -0.39
YBX3-210ENST00000540975 RELBQ01201 579 aa12.6□□□□□ -0.39
YBX3-210ENST00000540975 MAP7D1Q3KQU3 841 aa12.6□□□□□ -0.39
YBX3-210ENST00000540975 PLPP7Q8NBV4 271 aa12.6□□□□□ -0.39
YBX3-210ENST00000540975 GLMNQ92990 594 aa12.6□□□□□ -0.39
YBX3-210ENST00000540975 KIFC2Q96AC6 838 aa12.6□□□□□ -0.39
YBX3-210ENST00000540975 USP4Q13107 963 aa12.59□□□□□ -0.39
YBX3-210ENST00000540975 ESF1Q9H501 851 aaKnown RBP12.59□□□□□ -0.39
YBX3-210ENST00000540975 SNRPBP14678 240 aaKnown RBP12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms