RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 NFAT5O94916 1531 aa16.09■□□□□ 0.17
AP003559.1-201ENST00000540906 SBNO1A3KN83 1393 aa16.09■□□□□ 0.17
AP003559.1-201ENST00000540906 RIPK4P57078 832 aa16.08■□□□□ 0.16
AP003559.1-201ENST00000540906 WDR63Q8IWG1 891 aa16.08■□□□□ 0.16
AP003559.1-201ENST00000540906 LTN1O94822 1766 aa16.07■□□□□ 0.16
AP003559.1-201ENST00000540906 NCBP3Q53F19 620 aaKnown RBP16.07■□□□□ 0.16
AP003559.1-201ENST00000540906 FLT4P35916 1363 aa16.07■□□□□ 0.16
AP003559.1-201ENST00000540906 DLG5Q8TDM6 1919 aa16.07■□□□□ 0.16
AP003559.1-201ENST00000540906 NCOA3Q9Y6Q9 1424 aa16.06■□□□□ 0.16
AP003559.1-201ENST00000540906 DCCP43146 1447 aa16.06■□□□□ 0.16
AP003559.1-201ENST00000540906 PLEKHG5O94827 1062 aa16.05■□□□□ 0.16
AP003559.1-201ENST00000540906 ERICH6BQ5W0A0 696 aa16.05■□□□□ 0.16
AP003559.1-201ENST00000540906 SULT6B1Q6IMI4 303 aa16.05■□□□□ 0.16
AP003559.1-201ENST00000540906 ATF3P18847 181 aa16.05■□□□□ 0.16
AP003559.1-201ENST00000540906 C20orf194Q5TEA3 1177 aa16.05■□□□□ 0.16
AP003559.1-201ENST00000540906 B4GALNT3Q6L9W6 998 aa16.05■□□□□ 0.16
AP003559.1-201ENST00000540906 KRT28Q7Z3Y7 464 aa16.05■□□□□ 0.16
AP003559.1-201ENST00000540906 PPP4R2Q9NY27 417 aa16.05■□□□□ 0.16
AP003559.1-201ENST00000540906 HOXC9P31274 260 aa16.04■□□□□ 0.16
AP003559.1-201ENST00000540906 AMPHP49418 695 aa16.04■□□□□ 0.16
AP003559.1-201ENST00000540906 NFE2L2Q16236 605 aa16.04■□□□□ 0.16
AP003559.1-201ENST00000540906 EXOC6Q8TAG9 804 aa16.04■□□□□ 0.16
AP003559.1-201ENST00000540906 TSR2Q969E8 191 aaKnown RBP16.04■□□□□ 0.16
AP003559.1-201ENST00000540906 THUMPD2Q9BTF0 503 aaKnown RBP16.04■□□□□ 0.16
AP003559.1-201ENST00000540906 BCAR3O75815 825 aa16.03■□□□□ 0.16
AP003559.1-201ENST00000540906 ALS2Q96Q42 1657 aa16.03■□□□□ 0.16
AP003559.1-201ENST00000540906 SLIT3O75094 1523 aa16.03■□□□□ 0.16
AP003559.1-201ENST00000540906 PNNQ9H307 717 aaKnown RBP16.03■□□□□ 0.16
AP003559.1-201ENST00000540906 ARHGEF10O15013 1369 aa16.01■□□□□ 0.15
AP003559.1-201ENST00000540906 MSH6P52701 1360 aa16.01■□□□□ 0.15
AP003559.1-201ENST00000540906 FANCIQ9NVI1 1328 aa16.01■□□□□ 0.15
AP003559.1-201ENST00000540906 EYA1Q99502 592 aa16.01■□□□□ 0.15
AP003559.1-201ENST00000540906 MED1Q15648 1581 aaPredicted RBP16.01■□□□□ 0.15
AP003559.1-201ENST00000540906 IGSF1Q8N6C5 1336 aa16■□□□□ 0.15
AP003559.1-201ENST00000540906 FAM83GA6ND36 823 aa16■□□□□ 0.15
AP003559.1-201ENST00000540906 LMOD2Q6P5Q4 547 aa16■□□□□ 0.15
AP003559.1-201ENST00000540906 CADPS2Q86UW7 1296 aa16■□□□□ 0.15
AP003559.1-201ENST00000540906 USP19O94966 1318 aa15.99■□□□□ 0.15
AP003559.1-201ENST00000540906 LTV1Q96GA3 475 aaPredicted RBP15.99■□□□□ 0.15
AP003559.1-201ENST00000540906 CRBNQ96SW2 442 aa15.99■□□□□ 0.15
AP003559.1-201ENST00000540906 ZBTB7CA1YPR0 619 aa15.98■□□□□ 0.15
AP003559.1-201ENST00000540906 DCTN1Q14203 1278 aa15.98■□□□□ 0.15
AP003559.1-201ENST00000540906 RGPD2P0DJD1 1756 aa15.98■□□□□ 0.15
AP003559.1-201ENST00000540906 KDRP35968 1356 aa15.98■□□□□ 0.15
AP003559.1-201ENST00000540906 PXDNQ92626 1479 aa15.98■□□□□ 0.15
AP003559.1-201ENST00000540906 PHRF1Q9P1Y6 1649 aaKnown RBP15.98■□□□□ 0.15
AP003559.1-201ENST00000540906 RTL1A6NKG5 1358 aa15.98■□□□□ 0.15
AP003559.1-201ENST00000540906 KIF24Q5T7B8 1368 aa15.98■□□□□ 0.15
AP003559.1-201ENST00000540906 IL16Q14005 1332 aa15.97■□□□□ 0.15
AP003559.1-201ENST00000540906 GCP02774 474 aa15.97■□□□□ 0.15
AP003559.1-201ENST00000540906 MYH16Q9H6N6 1097 aa15.97■□□□□ 0.15
AP003559.1-201ENST00000540906 NEFMP07197 916 aa15.96■□□□□ 0.15
AP003559.1-201ENST00000540906 RARSP54136 660 aaKnown RBP15.96■□□□□ 0.15
AP003559.1-201ENST00000540906 EXOSC9Q06265 439 aaKnown RBP15.96■□□□□ 0.15
AP003559.1-201ENST00000540906 BRINP3Q76B58 766 aa15.96■□□□□ 0.15
AP003559.1-201ENST00000540906 USHBP1Q8N6Y0 703 aa15.96■□□□□ 0.15
AP003559.1-201ENST00000540906 IP6K1Q92551 441 aa15.96■□□□□ 0.15
AP003559.1-201ENST00000540906 ARHGEF25Q86VW2 580 aa15.95■□□□□ 0.14
AP003559.1-201ENST00000540906 BCL2L13Q9BXK5 485 aa15.95■□□□□ 0.14
AP003559.1-201ENST00000540906 LTBP4Q8N2S1 1624 aa15.95■□□□□ 0.14
AP003559.1-201ENST00000540906 RGPD5Q99666 1765 aa15.94■□□□□ 0.14
AP003559.1-201ENST00000540906 KCNH5Q8NCM2 988 aa15.94■□□□□ 0.14
AP003559.1-201ENST00000540906 TNNQ9UQP3 1299 aa15.94■□□□□ 0.14
AP003559.1-201ENST00000540906 CRYBG1Q9Y4K1 1723 aa15.94■□□□□ 0.14
AP003559.1-201ENST00000540906 MTHFSDQ2M296 383 aaKnown RBP15.94■□□□□ 0.14
AP003559.1-201ENST00000540906 LAS1LQ9Y4W2 734 aaKnown RBP15.94■□□□□ 0.14
AP003559.1-201ENST00000540906 ZNF853P0CG23 659 aa15.93■□□□□ 0.14
AP003559.1-201ENST00000540906 CABLES1Q8TDN4 633 aa15.93■□□□□ 0.14
AP003559.1-201ENST00000540906 AXIN2Q9Y2T1 843 aa15.93■□□□□ 0.14
AP003559.1-201ENST00000540906 TNS3Q68CZ2 1445 aa15.93■□□□□ 0.14
AP003559.1-201ENST00000540906 NBPF6Q5VWK0 638 aa15.92■□□□□ 0.14
AP003559.1-201ENST00000540906 MCM10Q7L590 875 aa15.92■□□□□ 0.14
AP003559.1-201ENST00000540906 LRRC59Q96AG4 307 aaKnown RBP15.92■□□□□ 0.14
AP003559.1-201ENST00000540906 NBPF4Q96M43 638 aa15.92■□□□□ 0.14
AP003559.1-201ENST00000540906 NPHP3Q7Z494 1330 aa15.92■□□□□ 0.14
AP003559.1-201ENST00000540906 SLAIN2Q9P270 581 aa15.91■□□□□ 0.14
AP003559.1-201ENST00000540906 ZC3H6P61129 1189 aaKnown RBP15.91■□□□□ 0.14
AP003559.1-201ENST00000540906 MBIPQ9NS73 344 aa15.91■□□□□ 0.14
AP003559.1-201ENST00000540906 SPATA31A3Q5VYP0 1347 aa15.91■□□□□ 0.14
AP003559.1-201ENST00000540906 CCDC136Q96JN2 1154 aa15.9■□□□□ 0.14
AP003559.1-201ENST00000540906 CERKQ8TCT0 537 aa15.89■□□□□ 0.13
AP003559.1-201ENST00000540906 COL18A1P39060 1754 aa15.89■□□□□ 0.13
AP003559.1-201ENST00000540906 TSPYL6Q8N831 410 aa15.89■□□□□ 0.13
AP003559.1-201ENST00000540906 PANK1Q8TE04 598 aa15.89■□□□□ 0.13
AP003559.1-201ENST00000540906 IFT57Q9NWB7 429 aa15.89■□□□□ 0.13
AP003559.1-201ENST00000540906 LMOD3Q0VAK6 560 aa15.88■□□□□ 0.13
AP003559.1-201ENST00000540906 SSH1Q8WYL5 1049 aa15.88■□□□□ 0.13
AP003559.1-201ENST00000540906 FRAT1Q92837 279 aaPredicted RBP15.88■□□□□ 0.13
AP003559.1-201ENST00000540906 CRB1P82279 1406 aa15.88■□□□□ 0.13
AP003559.1-201ENST00000540906 CAMTA1Q9Y6Y1 1673 aa15.87■□□□□ 0.13
AP003559.1-201ENST00000540906 RLBP1P12271 317 aa15.87■□□□□ 0.13
AP003559.1-201ENST00000540906 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.87■□□□□ 0.13
AP003559.1-201ENST00000540906 ANKRD24Q8TF21 1146 aa15.87■□□□□ 0.13
AP003559.1-201ENST00000540906 CFAP44Q96MT7 982 aa15.87■□□□□ 0.13
AP003559.1-201ENST00000540906 GNAI1P63096 354 aa15.86■□□□□ 0.13
AP003559.1-201ENST00000540906 PIP4K2BP78356 416 aa15.86■□□□□ 0.13
AP003559.1-201ENST00000540906 SOS2Q07890 1332 aaPredicted RBP15.86■□□□□ 0.13
AP003559.1-201ENST00000540906 NCAPD2Q15021 1401 aa15.86■□□□□ 0.13
AP003559.1-201ENST00000540906 LRRC37A3O60309 1634 aa15.86■□□□□ 0.13
AP003559.1-201ENST00000540906 KRT24Q2M2I5 525 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms