RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 ERLIN1O75477 346 aa11.77□□□□□ -0.53
COL4A6-208ENST00000538570 CALCOCO1Q9P1Z2 691 aa11.77□□□□□ -0.53
COL4A6-208ENST00000538570 EIF3JO75822 258 aaKnown RBP11.77□□□□□ -0.53
COL4A6-208ENST00000538570 TICAM2Q86XR7 235 aa11.77□□□□□ -0.53
COL4A6-208ENST00000538570 NLRP2Q9NX02 1062 aa11.77□□□□□ -0.53
COL4A6-208ENST00000538570 TTC39AQ5SRH9 613 aa11.77□□□□□ -0.53
COL4A6-208ENST00000538570 TRERF1Q96PN7 1200 aa11.77□□□□□ -0.53
COL4A6-208ENST00000538570 ADAMTS8Q9UP79 889 aa11.77□□□□□ -0.53
COL4A6-208ENST00000538570 CYP46A1Q9Y6A2 500 aa11.77□□□□□ -0.53
COL4A6-208ENST00000538570 KIF6Q6ZMV9 814 aa11.77□□□□□ -0.53
COL4A6-208ENST00000538570 GAS2L2Q8NHY3 880 aa11.77□□□□□ -0.53
COL4A6-208ENST00000538570 GNAI2P04899 355 aa11.76□□□□□ -0.53
COL4A6-208ENST00000538570 CBFA2T2O43439 604 aa11.76□□□□□ -0.53
COL4A6-208ENST00000538570 PAF1Q8N7H5 531 aa11.76□□□□□ -0.53
COL4A6-208ENST00000538570 WDR33Q9C0J8 1336 aaKnown RBP11.76□□□□□ -0.53
COL4A6-208ENST00000538570 CCDC158Q5M9N0 1113 aa11.76□□□□□ -0.53
COL4A6-208ENST00000538570 FGD6Q6ZV73 1430 aa11.75□□□□□ -0.53
COL4A6-208ENST00000538570 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.75□□□□□ -0.53
COL4A6-208ENST00000538570 CABP2Q9NPB3 220 aa11.75□□□□□ -0.53
COL4A6-208ENST00000538570 WASHC2AQ641Q2 1341 aa11.75□□□□□ -0.53
COL4A6-208ENST00000538570 ANKRD62A6NC57 917 aa11.75□□□□□ -0.53
COL4A6-208ENST00000538570 ENOX2Q16206 610 aaKnown RBP11.75□□□□□ -0.53
COL4A6-208ENST00000538570 INCENPQ9NQS7 918 aa11.75□□□□□ -0.53
COL4A6-208ENST00000538570 TCP11L2Q8N4U5 519 aa11.75□□□□□ -0.53
COL4A6-208ENST00000538570 AQRO60306 1485 aaKnown RBP eCLIP11.75□□□□□ -0.53
COL4A6-208ENST00000538570 MTHFSP49914 203 aa11.75□□□□□ -0.53
COL4A6-208ENST00000538570 TRIM22Q8IYM9 498 aa11.75□□□□□ -0.53
COL4A6-208ENST00000538570 BRD2P25440 801 aaKnown RBP11.74□□□□□ -0.53
COL4A6-208ENST00000538570 ME1P48163 572 aa11.74□□□□□ -0.53
COL4A6-208ENST00000538570 K7ELQ4 463 aaPredicted RBP11.74□□□□□ -0.53
COL4A6-208ENST00000538570 KRT85P78386 507 aa11.74□□□□□ -0.53
COL4A6-208ENST00000538570 ATF3P18847 181 aa11.74□□□□□ -0.53
COL4A6-208ENST00000538570 CENPHQ9H3R5 247 aa11.74□□□□□ -0.53
COL4A6-208ENST00000538570 PDE3AQ14432 1141 aa11.74□□□□□ -0.53
COL4A6-208ENST00000538570 TANGO6Q9C0B7 1094 aa11.74□□□□□ -0.53
COL4A6-208ENST00000538570 C1orf115Q9H7X2 142 aa11.74□□□□□ -0.53
COL4A6-208ENST00000538570 EXOSC9Q06265 439 aaKnown RBP11.74□□□□□ -0.53
COL4A6-208ENST00000538570 TWISTNBQ3B726 338 aaPredicted RBP11.74□□□□□ -0.53
COL4A6-208ENST00000538570 IQCEQ6IPM2 695 aa11.74□□□□□ -0.53
COL4A6-208ENST00000538570 KLHL34Q8N239 644 aa11.74□□□□□ -0.53
COL4A6-208ENST00000538570 STK3Q13188 491 aa11.73□□□□□ -0.53
COL4A6-208ENST00000538570 GNL3LQ9NVN8 582 aaKnown RBP11.73□□□□□ -0.53
COL4A6-208ENST00000538570 MPNDQ8N594 471 aa11.73□□□□□ -0.53
COL4A6-208ENST00000538570 NOB1Q9ULX3 412 aaKnown RBP11.73□□□□□ -0.53
COL4A6-208ENST00000538570 CNNM1Q9NRU3 951 aa11.73□□□□□ -0.53
COL4A6-208ENST00000538570 CCDC69A6NI79 296 aa11.73□□□□□ -0.53
COL4A6-208ENST00000538570 TDO2P48775 406 aa11.73□□□□□ -0.53
COL4A6-208ENST00000538570 CUX1P39880 1505 aa11.73□□□□□ -0.53
COL4A6-208ENST00000538570 NUTM2GQ5VZR2 741 aa11.72□□□□□ -0.53
COL4A6-208ENST00000538570 PLEKHO1Q53GL0 409 aaPredicted RBP11.72□□□□□ -0.53
COL4A6-208ENST00000538570 ZSCAN30Q86W11 494 aa11.72□□□□□ -0.53
COL4A6-208ENST00000538570 IBSPP21815 317 aaPredicted RBP11.72□□□□□ -0.53
COL4A6-208ENST00000538570 NLRP6P59044 892 aa11.72□□□□□ -0.53
COL4A6-208ENST00000538570 LRRCC1Q9C099 1032 aa11.72□□□□□ -0.53
COL4A6-208ENST00000538570 CDCA7LQ96GN5 454 aa11.72□□□□□ -0.53
COL4A6-208ENST00000538570 NACAP1Q9BZK3 213 aa11.72□□□□□ -0.53
COL4A6-208ENST00000538570 NOL7Q9UMY1 257 aaKnown RBP11.72□□□□□ -0.53
COL4A6-208ENST00000538570 ZNF644Q9H582 1327 aaPredicted RBP11.72□□□□□ -0.53
COL4A6-208ENST00000538570 FAM177BA6PVY3 158 aa11.71□□□□□ -0.53
COL4A6-208ENST00000538570 FAM177A1Q8N128 213 aaPredicted RBP11.71□□□□□ -0.53
COL4A6-208ENST00000538570 ZHX3Q9H4I2 956 aa11.71□□□□□ -0.53
COL4A6-208ENST00000538570 PRKAR2BP31323 418 aa11.71□□□□□ -0.53
COL4A6-208ENST00000538570 CCT4P50991 539 aaKnown RBP11.71□□□□□ -0.53
COL4A6-208ENST00000538570 LARP1BQ659C4 914 aaKnown RBP11.71□□□□□ -0.53
COL4A6-208ENST00000538570 TAX1BP1Q86VP1 789 aa11.71□□□□□ -0.53
COL4A6-208ENST00000538570 PAIP2Q9BPZ3 127 aaKnown RBP11.71□□□□□ -0.53
COL4A6-208ENST00000538570 EZRP15311 586 aaKnown RBP11.71□□□□□ -0.54
COL4A6-208ENST00000538570 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.71□□□□□ -0.54
COL4A6-208ENST00000538570 GRIN2BQ13224 1484 aa11.71□□□□□ -0.54
COL4A6-208ENST00000538570 PPP2R1AP30153 589 aa11.71□□□□□ -0.54
COL4A6-208ENST00000538570 KIF21BO75037 1637 aa11.71□□□□□ -0.54
COL4A6-208ENST00000538570 CASKIN1Q8WXD9 1431 aa11.7□□□□□ -0.54
COL4A6-208ENST00000538570 CFTRP13569 1480 aa11.7□□□□□ -0.54
COL4A6-208ENST00000538570 SMG6Q86US8 1419 aaKnown RBP11.7□□□□□ -0.54
COL4A6-208ENST00000538570 FAM193AP78312 1265 aa11.7□□□□□ -0.54
COL4A6-208ENST00000538570 SOGA3Q5TF21 947 aa11.7□□□□□ -0.54
COL4A6-208ENST00000538570 LRRC9Q6ZRR7 1453 aa11.7□□□□□ -0.54
COL4A6-208ENST00000538570 SPATA32Q96LK8 384 aa11.69□□□□□ -0.54
COL4A6-208ENST00000538570 CDKL5O76039 1030 aa11.69□□□□□ -0.54
COL4A6-208ENST00000538570 CCDC57Q2TAC2 916 aa11.69□□□□□ -0.54
COL4A6-208ENST00000538570 SCAPERQ9BY12 1400 aa11.69□□□□□ -0.54
COL4A6-208ENST00000538570 ATP2B2Q01814 1243 aa11.69□□□□□ -0.54
COL4A6-208ENST00000538570 ZSCAN25Q6NSZ9 544 aa11.69□□□□□ -0.54
COL4A6-208ENST00000538570 CEP57L1Q8IYX8 460 aa11.69□□□□□ -0.54
COL4A6-208ENST00000538570 SRCIN1Q9C0H9 1055 aa11.69□□□□□ -0.54
COL4A6-208ENST00000538570 CFAP45Q9UL16 551 aa11.69□□□□□ -0.54
COL4A6-208ENST00000538570 GBP2P32456 591 aaPredicted RBP11.69□□□□□ -0.54
COL4A6-208ENST00000538570 SLC4A2P04920 1241 aa11.69□□□□□ -0.54
COL4A6-208ENST00000538570 TIGD1Q96MW7 591 aa11.69□□□□□ -0.54
COL4A6-208ENST00000538570 NUP62CLQ9H1M0 184 aa11.69□□□□□ -0.54
COL4A6-208ENST00000538570 ZSCAN31Q96LW9 406 aaPredicted RBP11.69□□□□□ -0.54
COL4A6-208ENST00000538570 GPRASP1Q5JY77 1395 aa11.69□□□□□ -0.54
COL4A6-208ENST00000538570 SMTNL1A8MU46 457 aa11.68□□□□□ -0.54
COL4A6-208ENST00000538570 NUP133Q8WUM0 1156 aa11.68□□□□□ -0.54
COL4A6-208ENST00000538570 RBM42Q9BTD8 480 aaKnown RBP11.68□□□□□ -0.54
COL4A6-208ENST00000538570 RRBP1Q9P2E9 1410 aaKnown RBP11.68□□□□□ -0.54
COL4A6-208ENST00000538570 FAM69CQ0P6D2 419 aa11.68□□□□□ -0.54
COL4A6-208ENST00000538570 LRRFIP2Q9Y608 721 aaKnown RBP11.68□□□□□ -0.54
COL4A6-208ENST00000538570 MAP4K4O95819 1239 aaPredicted RBP11.68□□□□□ -0.54
COL4A6-208ENST00000538570 BACH2Q9BYV9 841 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms