RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 IPO8O15397 1037 aaKnown RBP8.49□□□□□ -1.05
USP28-206ENST00000538224 IL13P35225 146 aa8.49□□□□□ -1.05
USP28-206ENST00000538224 GNAI1P63096 354 aa8.49□□□□□ -1.05
USP28-206ENST00000538224 FAM161AQ3B820 660 aa8.49□□□□□ -1.05
USP28-206ENST00000538224 SMC4Q9NTJ3 1288 aa8.49□□□□□ -1.05
USP28-206ENST00000538224 ACEP12821 1306 aa8.49□□□□□ -1.05
USP28-206ENST00000538224 MARF1Q9Y4F3 1742 aaKnown RBP8.49□□□□□ -1.05
USP28-206ENST00000538224 PPM1GO15355 546 aaPredicted RBP8.48□□□□□ -1.05
USP28-206ENST00000538224 MSH5O43196 834 aa8.48□□□□□ -1.05
USP28-206ENST00000538224 BRPF1P55201 1214 aaPredicted RBP8.48□□□□□ -1.05
USP28-206ENST00000538224 EXOSC9Q06265 439 aaKnown RBP8.48□□□□□ -1.05
USP28-206ENST00000538224 MVPQ14764 893 aaKnown RBP8.48□□□□□ -1.05
USP28-206ENST00000538224 DZIP1LQ8IYY4 767 aaKnown RBP8.48□□□□□ -1.05
USP28-206ENST00000538224 DNAJC5Q9H3Z4 198 aa8.48□□□□□ -1.05
USP28-206ENST00000538224 IFT57Q9NWB7 429 aa8.48□□□□□ -1.05
USP28-206ENST00000538224 DDX19BQ9UMR2 479 aa8.48□□□□□ -1.05
USP28-206ENST00000538224 AMOTL2Q9Y2J4 779 aa8.48□□□□□ -1.05
USP28-206ENST00000538224 EMILIN1Q9Y6C2 1016 aa8.48□□□□□ -1.05
USP28-206ENST00000538224 ARHGEF10O15013 1369 aa8.48□□□□□ -1.05
USP28-206ENST00000538224 PHRF1Q9P1Y6 1649 aaKnown RBP8.47□□□□□ -1.05
USP28-206ENST00000538224 ATF7IPQ6VMQ6 1270 aa8.47□□□□□ -1.05
USP28-206ENST00000538224 PANK1Q8TE04 598 aa8.47□□□□□ -1.05
USP28-206ENST00000538224 RWDD1Q9H446 243 aaPredicted RBP8.47□□□□□ -1.05
USP28-206ENST00000538224 ZBTB47Q9UFB7 747 aaPredicted RBP8.47□□□□□ -1.05
USP28-206ENST00000538224 COG6Q9Y2V7 657 aa8.47□□□□□ -1.05
USP28-206ENST00000538224 LTN1O94822 1766 aa8.47□□□□□ -1.05
USP28-206ENST00000538224 NWD1Q149M9 1564 aa8.47□□□□□ -1.05
USP28-206ENST00000538224 SBNO1A3KN83 1393 aa8.47□□□□□ -1.05
USP28-206ENST00000538224 LRRC37A3O60309 1634 aa8.47□□□□□ -1.05
USP28-206ENST00000538224 FLT4P35916 1363 aa8.47□□□□□ -1.05
USP28-206ENST00000538224 CEBPAP49715 358 aaPredicted RBP8.46□□□□□ -1.06
USP28-206ENST00000538224 TSR2Q969E8 191 aaKnown RBP8.46□□□□□ -1.06
USP28-206ENST00000538224 SLC26A8Q96RN1 970 aa8.46□□□□□ -1.06
USP28-206ENST00000538224 KIF1AQ12756 1690 aa8.46□□□□□ -1.06
USP28-206ENST00000538224 CACNA1FO60840 1977 aa8.45□□□□□ -1.06
USP28-206ENST00000538224 ARHGAP45Q92619 1136 aa8.45□□□□□ -1.06
USP28-206ENST00000538224 RTL1A6NKG5 1358 aa8.45□□□□□ -1.06
USP28-206ENST00000538224 N4BP2Q86UW6 1770 aaPredicted RBP8.45□□□□□ -1.06
USP28-206ENST00000538224 HMOX1P09601 288 aa8.44□□□□□ -1.06
USP28-206ENST00000538224 TRHP20396 242 aaPredicted RBP8.44□□□□□ -1.06
USP28-206ENST00000538224 ANKLE2Q86XL3 938 aa8.44□□□□□ -1.06
USP28-206ENST00000538224 NGDNQ8NEJ9 315 aaKnown RBP8.44□□□□□ -1.06
USP28-206ENST00000538224 SSH1Q8WYL5 1049 aa8.44□□□□□ -1.06
USP28-206ENST00000538224 CFAP44Q96MT7 982 aa8.44□□□□□ -1.06
USP28-206ENST00000538224 ADGRL3Q9HAR2 1447 aa8.44□□□□□ -1.06
USP28-206ENST00000538224 ZNF853P0CG23 659 aa8.43□□□□□ -1.06
USP28-206ENST00000538224 RLBP1P12271 317 aa8.43□□□□□ -1.06
USP28-206ENST00000538224 TRIM27P14373 513 aa8.43□□□□□ -1.06
USP28-206ENST00000538224 HDAC1Q13547 482 aaPredicted RBP8.43□□□□□ -1.06
USP28-206ENST00000538224 EIF4A2Q14240 407 aaKnown RBP8.43□□□□□ -1.06
USP28-206ENST00000538224 RRS1Q15050 365 aaKnown RBP8.43□□□□□ -1.06
USP28-206ENST00000538224 BCL2L13Q9BXK5 485 aa8.43□□□□□ -1.06
USP28-206ENST00000538224 NCKAP5LQ9HCH0 1330 aa8.43□□□□□ -1.06
USP28-206ENST00000538224 KDRP35968 1356 aa8.43□□□□□ -1.06
USP28-206ENST00000538224 RGS3P49796 1198 aa8.42□□□□□ -1.06
USP28-206ENST00000538224 C8orf34Q49A92 452 aa8.42□□□□□ -1.06
USP28-206ENST00000538224 NPM2Q86SE8 214 aaKnown RBP8.42□□□□□ -1.06
USP28-206ENST00000538224 ITPRIPQ8IWB1 547 aa8.42□□□□□ -1.06
USP28-206ENST00000538224 ZRANB1Q9UGI0 708 aa8.42□□□□□ -1.06
USP28-206ENST00000538224 KIAA0232Q92628 1395 aa8.42□□□□□ -1.06
USP28-206ENST00000538224 FAM208AQ9UK61 1670 aaKnown RBP8.42□□□□□ -1.06
USP28-206ENST00000538224 IGHDP01880 384 aa8.41□□□□□ -1.06
USP28-206ENST00000538224 PLPPR3Q6T4P5 718 aa8.41□□□□□ -1.06
USP28-206ENST00000538224 PHACTR3Q96KR7 559 aa8.41□□□□□ -1.06
USP28-206ENST00000538224 API5Q9BZZ5 524 aaKnown RBP8.41□□□□□ -1.06
USP28-206ENST00000538224 UPF2Q9HAU5 1272 aaKnown RBP8.41□□□□□ -1.06
USP28-206ENST00000538224 DAXXQ9UER7 740 aaPredicted RBP8.41□□□□□ -1.06
USP28-206ENST00000538224 NOB1Q9ULX3 412 aaKnown RBP8.41□□□□□ -1.06
USP28-206ENST00000538224 NPHP4O75161 1426 aaPredicted RBP8.4□□□□□ -1.06
USP28-206ENST00000538224 SOS1Q07889 1333 aaPredicted RBP8.4□□□□□ -1.06
USP28-206ENST00000538224 MAP3K19Q56UN5 1328 aa8.4□□□□□ -1.06
USP28-206ENST00000538224 IGSF1Q8N6C5 1336 aa8.4□□□□□ -1.06
USP28-206ENST00000538224 KCNA6P17658 529 aa8.4□□□□□ -1.06
USP28-206ENST00000538224 TWISTNBQ3B726 338 aaPredicted RBP8.4□□□□□ -1.06
USP28-206ENST00000538224 SULT6B1Q6IMI4 303 aa8.4□□□□□ -1.06
USP28-206ENST00000538224 GAS2L2Q8NHY3 880 aa8.4□□□□□ -1.06
USP28-206ENST00000538224 LAS1LQ9Y4W2 734 aaKnown RBP8.4□□□□□ -1.06
USP28-206ENST00000538224 NFAT5O94916 1531 aa8.39□□□□□ -1.07
USP28-206ENST00000538224 ABCC4O15439 1325 aa8.39□□□□□ -1.07
USP28-206ENST00000538224 HTATSF1O43719 755 aaKnown RBP8.39□□□□□ -1.07
USP28-206ENST00000538224 VAMP4O75379 141 aa8.39□□□□□ -1.07
USP28-206ENST00000538224 AMPHP49418 695 aa8.39□□□□□ -1.07
USP28-206ENST00000538224 MRPL50Q8N5N7 158 aaKnown RBP8.39□□□□□ -1.07
USP28-206ENST00000538224 MBIPQ9NS73 344 aa8.39□□□□□ -1.07
USP28-206ENST00000538224 PCDHB15Q9Y5E8 787 aa8.39□□□□□ -1.07
USP28-206ENST00000538224 LMO7Q8WWI1 1683 aa8.39□□□□□ -1.07
USP28-206ENST00000538224 CAMTA1Q9Y6Y1 1673 aa8.39□□□□□ -1.07
USP28-206ENST00000538224 TRPM3Q9HCF6 1732 aaPredicted RBP8.38□□□□□ -1.07
USP28-206ENST00000538224 NUTM2FA1L443 756 aa8.38□□□□□ -1.07
USP28-206ENST00000538224 EIF5BO60841 1220 aaKnown RBP8.38□□□□□ -1.07
USP28-206ENST00000538224 FBLN1P23142 703 aa8.38□□□□□ -1.07
USP28-206ENST00000538224 SMC5Q8IY18 1101 aa8.38□□□□□ -1.07
USP28-206ENST00000538224 TMEM57Q8N5G2 664 aa8.38□□□□□ -1.07
USP28-206ENST00000538224 RTF1Q92541 710 aaKnown RBP8.38□□□□□ -1.07
USP28-206ENST00000538224 ZBTB40Q9NUA8 1239 aa8.38□□□□□ -1.07
USP28-206ENST00000538224 PDZRN3Q9UPQ7 1066 aa8.38□□□□□ -1.07
USP28-206ENST00000538224 TNNQ9UQP3 1299 aa8.38□□□□□ -1.07
USP28-206ENST00000538224 SLIT3O75094 1523 aa8.38□□□□□ -1.07
USP28-206ENST00000538224 CRB1P82279 1406 aa8.37□□□□□ -1.07
USP28-206ENST00000538224 PTPRCP08575 1304 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms