RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 CTNNA3Q9UI47 895 aa13.06□□□□□ -0.32
RTN3-208ENST00000537981 WDR7Q9Y4E6 1490 aa13.06□□□□□ -0.32
RTN3-208ENST00000537981 PRAG1Q86YV5 1406 aa13.06□□□□□ -0.32
RTN3-208ENST00000537981 RAPGEF6Q8TEU7 1601 aa13.05□□□□□ -0.32
RTN3-208ENST00000537981 OGFRQ9NZT2 677 aa13.05□□□□□ -0.32
RTN3-208ENST00000537981 CHGAP10645 457 aaKnown RBP13.05□□□□□ -0.32
RTN3-208ENST00000537981 TERF2Q15554 542 aa13.05□□□□□ -0.32
RTN3-208ENST00000537981 TMED8Q6PL24 325 aaPredicted RBP13.05□□□□□ -0.32
RTN3-208ENST00000537981 TBC1D9Q6ZT07 1266 aa13.05□□□□□ -0.32
RTN3-208ENST00000537981 DNAJC2Q99543 621 aaKnown RBP13.05□□□□□ -0.32
RTN3-208ENST00000537981 KCNF1Q9H3M0 494 aa13.05□□□□□ -0.32
RTN3-208ENST00000537981 ZCCHC11Q5TAX3 1644 aaKnown RBP13.05□□□□□ -0.32
RTN3-208ENST00000537981 ANKRD30AQ9BXX3 1397 aa13.04□□□□□ -0.32
RTN3-208ENST00000537981 TULP2O00295 520 aa13.04□□□□□ -0.32
RTN3-208ENST00000537981 TIGD1Q96MW7 591 aa13.04□□□□□ -0.32
RTN3-208ENST00000537981 SPTLC3Q9NUV7 552 aa13.04□□□□□ -0.32
RTN3-208ENST00000537981 NUP155O75694 1391 aa13.04□□□□□ -0.32
RTN3-208ENST00000537981 CCDC144AA2RUR9 1427 aa13.04□□□□□ -0.32
RTN3-208ENST00000537981 SOX12O15370 315 aa13.03□□□□□ -0.32
RTN3-208ENST00000537981 TMX1Q9H3N1 280 aa13.03□□□□□ -0.32
RTN3-208ENST00000537981 SLC24A3Q9HC58 644 aa13.03□□□□□ -0.32
RTN3-208ENST00000537981 CTIFO43310 598 aaKnown RBP13.03□□□□□ -0.32
RTN3-208ENST00000537981 SLC20A2Q08357 652 aa13.03□□□□□ -0.32
RTN3-208ENST00000537981 GDPD2Q9HCC8 539 aa13.03□□□□□ -0.32
RTN3-208ENST00000537981 PRR29P0C7W0 189 aa13.02□□□□□ -0.32
RTN3-208ENST00000537981 ZNF777Q9ULD5 760 aaPredicted RBP13.02□□□□□ -0.32
RTN3-208ENST00000537981 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.02□□□□□ -0.32
RTN3-208ENST00000537981 AP5Z1O43299 807 aa13.02□□□□□ -0.33
RTN3-208ENST00000537981 ADCY5O95622 1261 aa13.02□□□□□ -0.33
RTN3-208ENST00000537981 ITPRIPQ8IWB1 547 aa13.02□□□□□ -0.33
RTN3-208ENST00000537981 CCDC82Q8N4S0 544 aa13.02□□□□□ -0.33
RTN3-208ENST00000537981 PLEKHD1A6NEE1 506 aa13.01□□□□□ -0.33
RTN3-208ENST00000537981 GABPB1Q06547 395 aaPredicted RBP13.01□□□□□ -0.33
RTN3-208ENST00000537981 TSPY26PQ9H489 355 aa13.01□□□□□ -0.33
RTN3-208ENST00000537981 DDX41Q9UJV9 622 aaKnown RBP13.01□□□□□ -0.33
RTN3-208ENST00000537981 TCHHQ07283 1943 aa13.01□□□□□ -0.33
RTN3-208ENST00000537981 SMARCA5O60264 1052 aaPredicted RBP13.01□□□□□ -0.33
RTN3-208ENST00000537981 GADD45BO75293 160 aaPredicted RBP13.01□□□□□ -0.33
RTN3-208ENST00000537981 TMF1P82094 1093 aa13.01□□□□□ -0.33
RTN3-208ENST00000537981 FEZ1Q99689 392 aa13.01□□□□□ -0.33
RTN3-208ENST00000537981 TMCO4Q5TGY1 634 aa13□□□□□ -0.33
RTN3-208ENST00000537981 ABCC10Q5T3U5 1492 aa13□□□□□ -0.33
RTN3-208ENST00000537981 SLC4A2P04920 1241 aa13□□□□□ -0.33
RTN3-208ENST00000537981 DZIP1LQ8IYY4 767 aaKnown RBP13□□□□□ -0.33
RTN3-208ENST00000537981 FEZ2Q9UHY8 353 aaPredicted RBP13□□□□□ -0.33
RTN3-208ENST00000537981 PRDM15P57071 1507 aaPredicted RBP12.99□□□□□ -0.33
RTN3-208ENST00000537981 TRIM27P14373 513 aa12.99□□□□□ -0.33
RTN3-208ENST00000537981 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.99□□□□□ -0.33
RTN3-208ENST00000537981 V9GYY5 206 aaPredicted RBP12.99□□□□□ -0.33
RTN3-208ENST00000537981 HDAC1Q13547 482 aaPredicted RBP12.99□□□□□ -0.33
RTN3-208ENST00000537981 SPC24Q8NBT2 197 aa12.99□□□□□ -0.33
RTN3-208ENST00000537981 TSR2Q969E8 191 aaKnown RBP12.99□□□□□ -0.33
RTN3-208ENST00000537981 RNF216Q9NWF9 866 aaPredicted RBP12.99□□□□□ -0.33
RTN3-208ENST00000537981 KCNG1Q9UIX4 513 aa12.99□□□□□ -0.33
RTN3-208ENST00000537981 PIK3C2GO75747 1445 aa12.98□□□□□ -0.33
RTN3-208ENST00000537981 NUCB1Q02818 461 aa12.98□□□□□ -0.33
RTN3-208ENST00000537981 TICAM2Q86XR7 235 aa12.98□□□□□ -0.33
RTN3-208ENST00000537981 KIF18AQ8NI77 898 aa12.98□□□□□ -0.33
RTN3-208ENST00000537981 KIAA1524Q8TCG1 905 aa12.98□□□□□ -0.33
RTN3-208ENST00000537981 MYCNP04198 464 aaPredicted RBP12.98□□□□□ -0.33
RTN3-208ENST00000537981 HCLS1P14317 486 aaPredicted RBP12.98□□□□□ -0.33
RTN3-208ENST00000537981 NUCB2P80303 420 aa12.98□□□□□ -0.33
RTN3-208ENST00000537981 EP400NLQ6ZTU2 488 aa12.97□□□□□ -0.33
RTN3-208ENST00000537981 CCDC66A2RUB6 948 aa12.97□□□□□ -0.33
RTN3-208ENST00000537981 CHD1LQ86WJ1 897 aa12.97□□□□□ -0.33
RTN3-208ENST00000537981 NFATC2IPQ8NCF5 419 aa12.97□□□□□ -0.33
RTN3-208ENST00000537981 ANKRD50Q9ULJ7 1429 aa12.97□□□□□ -0.33
RTN3-208ENST00000537981 DIP2BQ9P265 1576 aa12.97□□□□□ -0.33
RTN3-208ENST00000537981 TSPOAP1O95153 1857 aa12.97□□□□□ -0.33
RTN3-208ENST00000537981 HNRNPH2P55795 449 aaKnown RBP12.96□□□□□ -0.33
RTN3-208ENST00000537981 TMEM57Q8N5G2 664 aa12.96□□□□□ -0.33
RTN3-208ENST00000537981 CFAP74Q9C0B2 1584 aa12.96□□□□□ -0.33
RTN3-208ENST00000537981 MORC2Q9Y6X9 1032 aaPredicted RBP12.96□□□□□ -0.33
RTN3-208ENST00000537981 ADGBQ8N7X0 1667 aa12.96□□□□□ -0.33
RTN3-208ENST00000537981 NPC1L1Q9UHC9 1359 aa12.96□□□□□ -0.33
RTN3-208ENST00000537981 LOC102724159A0A0B4J2E5 919 aa12.96□□□□□ -0.34
RTN3-208ENST00000537981 VGFO15240 615 aaPredicted RBP12.96□□□□□ -0.34
RTN3-208ENST00000537981 GYS2P54840 703 aa12.96□□□□□ -0.34
RTN3-208ENST00000537981 PWP2Q15269 919 aaKnown RBP12.96□□□□□ -0.34
RTN3-208ENST00000537981 ZKSCAN2Q63HK3 967 aa12.96□□□□□ -0.34
RTN3-208ENST00000537981 C16orf45Q96MC5 204 aaPredicted RBP12.96□□□□□ -0.34
RTN3-208ENST00000537981 ASXL1Q8IXJ9 1541 aa12.95□□□□□ -0.34
RTN3-208ENST00000537981 BMP2KLQ5H9B9 411 aa12.95□□□□□ -0.34
RTN3-208ENST00000537981 TCP11L2Q8N4U5 519 aa12.95□□□□□ -0.34
RTN3-208ENST00000537981 KIF13AQ9H1H9 1805 aa12.95□□□□□ -0.34
RTN3-208ENST00000537981 RAD51AP2Q09MP3 1159 aa12.95□□□□□ -0.34
RTN3-208ENST00000537981 KMT5BQ4FZB7 885 aa12.95□□□□□ -0.34
RTN3-208ENST00000537981 ANKRD45Q5TZF3 282 aa12.95□□□□□ -0.34
RTN3-208ENST00000537981 GPRASP1Q5JY77 1395 aa12.95□□□□□ -0.34
RTN3-208ENST00000537981 A2MP01023 1474 aa12.95□□□□□ -0.34
RTN3-208ENST00000537981 ITSN2Q9NZM3 1697 aa12.95□□□□□ -0.34
RTN3-208ENST00000537981 SRPK2P78362 688 aaKnown RBP12.94□□□□□ -0.34
RTN3-208ENST00000537981 DIAPH3Q9NSV4 1193 aa12.94□□□□□ -0.34
RTN3-208ENST00000537981 GSPT1P15170 499 aaKnown RBP12.93□□□□□ -0.34
RTN3-208ENST00000537981 RBM6P78332 1123 aaKnown RBP12.93□□□□□ -0.34
RTN3-208ENST00000537981 LRMPQ12912 555 aa12.93□□□□□ -0.34
RTN3-208ENST00000537981 SMC4Q9NTJ3 1288 aa12.93□□□□□ -0.34
RTN3-208ENST00000537981 MYOM1P52179 1685 aa12.92□□□□□ -0.34
RTN3-208ENST00000537981 PSEN1P49768 467 aa12.92□□□□□ -0.34
RTN3-208ENST00000537981 CHAF1AQ13111 956 aaPredicted RBP12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms