RNA–Protein interactions for RNA: ENST00000537750.5

SYNE1-236, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-236ENST00000537750 USP26Q9BXU7 913 aa18.39■□□□□ 0.53
SYNE1-236ENST00000537750 ATAD2Q6PL18 1390 aa18.39■□□□□ 0.53
SYNE1-236ENST00000537750 VWDEQ8N2E2 1590 aa18.38■□□□□ 0.53
SYNE1-236ENST00000537750 PRDM10Q9NQV6 1147 aa18.38■□□□□ 0.53
SYNE1-236ENST00000537750 EVC2Q86UK5 1308 aa18.38■□□□□ 0.53
SYNE1-236ENST00000537750 ARHGAP31Q2M1Z3 1444 aa18.38■□□□□ 0.53
SYNE1-236ENST00000537750 KIF1BO60333 1816 aa18.38■□□□□ 0.53
SYNE1-236ENST00000537750 MRPL50Q8N5N7 158 aaKnown RBP18.37■□□□□ 0.53
SYNE1-236ENST00000537750 USP32Q8NFA0 1604 aa18.37■□□□□ 0.53
SYNE1-236ENST00000537750 MED14O60244 1454 aa18.37■□□□□ 0.53
SYNE1-236ENST00000537750 NSD2O96028 1365 aa18.37■□□□□ 0.53
SYNE1-236ENST00000537750 VAMP4O75379 141 aa18.36■□□□□ 0.53
SYNE1-236ENST00000537750 JARID2Q92833 1246 aaPredicted RBP18.36■□□□□ 0.53
SYNE1-236ENST00000537750 ERCC6L2Q5T890 1561 aa18.36■□□□□ 0.53
SYNE1-236ENST00000537750 LRSAM1Q6UWE0 723 aa18.36■□□□□ 0.53
SYNE1-236ENST00000537750 OTUD7AQ8TE49 926 aaPredicted RBP18.36■□□□□ 0.53
SYNE1-236ENST00000537750 DIAPH1O60610 1272 aaKnown RBP18.36■□□□□ 0.53
SYNE1-236ENST00000537750 MPNDQ8N594 471 aa18.36■□□□□ 0.53
SYNE1-236ENST00000537750 IFT172Q9UG01 1749 aa18.35■□□□□ 0.53
SYNE1-236ENST00000537750 DYNC1I1O14576 645 aa18.35■□□□□ 0.53
SYNE1-236ENST00000537750 FBLN1P23142 703 aa18.35■□□□□ 0.53
SYNE1-236ENST00000537750 CSPP1Q1MSJ5 1256 aa18.35■□□□□ 0.53
SYNE1-236ENST00000537750 A0A1W2PP64 1363 aa18.34■□□□□ 0.53
SYNE1-236ENST00000537750 ZC3H13Q5T200 1668 aaKnown RBP18.34■□□□□ 0.53
SYNE1-236ENST00000537750 COL3A1P02461 1466 aaPredicted RBP18.34■□□□□ 0.53
SYNE1-236ENST00000537750 APBB1O00213 710 aa18.33■□□□□ 0.53
SYNE1-236ENST00000537750 FYB1O15117 783 aa18.33■□□□□ 0.53
SYNE1-236ENST00000537750 TTC22Q5TAA0 569 aa18.33■□□□□ 0.53
SYNE1-236ENST00000537750 SASS6Q6UVJ0 657 aa18.33■□□□□ 0.53
SYNE1-236ENST00000537750 CCDC39Q9UFE4 941 aa18.33■□□□□ 0.53
SYNE1-236ENST00000537750 ADGRB1O14514 1584 aa18.33■□□□□ 0.53
SYNE1-236ENST00000537750 SETBP1Q9Y6X0 1596 aa18.33■□□□□ 0.53
SYNE1-236ENST00000537750 PRKAR2BP31323 418 aa18.33■□□□□ 0.52
SYNE1-236ENST00000537750 TSC1Q92574 1164 aa18.32■□□□□ 0.52
SYNE1-236ENST00000537750 CWC22Q9HCG8 908 aaKnown RBP18.32■□□□□ 0.52
SYNE1-236ENST00000537750 BRPF1P55201 1214 aaPredicted RBP18.32■□□□□ 0.52
SYNE1-236ENST00000537750 SRPK2P78362 688 aaKnown RBP18.32■□□□□ 0.52
SYNE1-236ENST00000537750 TULP4Q9NRJ4 1543 aa18.32■□□□□ 0.52
SYNE1-236ENST00000537750 INO80Q9ULG1 1556 aaPredicted RBP18.32■□□□□ 0.52
SYNE1-236ENST00000537750 ATP7AQ04656 1500 aa18.32■□□□□ 0.52
SYNE1-236ENST00000537750 PHACTR3Q96KR7 559 aa18.31■□□□□ 0.52
SYNE1-236ENST00000537750 CHMP4BQ9H444 224 aaKnown RBP18.31■□□□□ 0.52
SYNE1-236ENST00000537750 ST18O60284 1047 aa18.31■□□□□ 0.52
SYNE1-236ENST00000537750 PTMAP06454 111 aaKnown RBP18.31■□□□□ 0.52
SYNE1-236ENST00000537750 MCM5P33992 734 aa18.31■□□□□ 0.52
SYNE1-236ENST00000537750 CFAP65Q6ZU64 1925 aaKnown RBP18.3■□□□□ 0.52
SYNE1-236ENST00000537750 ARHGAP45Q92619 1136 aa18.3■□□□□ 0.52
SYNE1-236ENST00000537750 STK26Q9P289 416 aa18.3■□□□□ 0.52
SYNE1-236ENST00000537750 ZHX1Q9UKY1 873 aaPredicted RBP18.3■□□□□ 0.52
SYNE1-236ENST00000537750 PPRC1Q5VV67 1664 aaKnown RBP18.3■□□□□ 0.52
SYNE1-236ENST00000537750 ABCC4O15439 1325 aa18.3■□□□□ 0.52
SYNE1-236ENST00000537750 SMARCA5O60264 1052 aaPredicted RBP18.3■□□□□ 0.52
SYNE1-236ENST00000537750 HMOX1P09601 288 aa18.3■□□□□ 0.52
SYNE1-236ENST00000537750 SDSP20132 328 aa18.3■□□□□ 0.52
SYNE1-236ENST00000537750 INTS3Q68E01 1043 aaKnown RBP18.3■□□□□ 0.52
SYNE1-236ENST00000537750 PIK3R4Q99570 1358 aa18.29■□□□□ 0.52
SYNE1-236ENST00000537750 SMAP1Q8IYB5 467 aaPredicted RBP18.29■□□□□ 0.52
SYNE1-236ENST00000537750 MROH1Q8NDA8 1641 aa18.29■□□□□ 0.52
SYNE1-236ENST00000537750 ZCCHC11Q5TAX3 1644 aaKnown RBP18.29■□□□□ 0.52
SYNE1-236ENST00000537750 FOXD4L6Q3SYB3 417 aaPredicted RBP18.28■□□□□ 0.52
SYNE1-236ENST00000537750 FOXD4L3Q6VB84 417 aaPredicted RBP18.28■□□□□ 0.52
SYNE1-236ENST00000537750 DCTPP1Q9H773 170 aa18.28■□□□□ 0.52
SYNE1-236ENST00000537750 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.28■□□□□ 0.52
SYNE1-236ENST00000537750 PTCH1Q13635 1447 aa18.28■□□□□ 0.52
SYNE1-236ENST00000537750 ZNF428Q96B54 188 aa18.28■□□□□ 0.52
SYNE1-236ENST00000537750 ZNF830Q96NB3 372 aaPredicted RBP18.28■□□□□ 0.52
SYNE1-236ENST00000537750 PUS7Q96PZ0 661 aaKnown RBP18.28■□□□□ 0.52
SYNE1-236ENST00000537750 DNTTIP2Q5QJE6 756 aaKnown RBP18.28■□□□□ 0.52
SYNE1-236ENST00000537750 MTERF4Q7Z6M4 381 aaKnown RBP18.28■□□□□ 0.52
SYNE1-236ENST00000537750 PODXL2Q9NZ53 605 aa18.28■□□□□ 0.52
SYNE1-236ENST00000537750 EFCAB6Q5THR3 1501 aa18.28■□□□□ 0.52
SYNE1-236ENST00000537750 MBIPQ9NS73 344 aa18.27■□□□□ 0.52
SYNE1-236ENST00000537750 FCHSD2O94868 740 aa18.27■□□□□ 0.51
SYNE1-236ENST00000537750 C8orf58Q8NAV2 365 aa18.27■□□□□ 0.51
SYNE1-236ENST00000537750 ADGRB3O60242 1522 aa18.26■□□□□ 0.51
SYNE1-236ENST00000537750 TWISTNBQ3B726 338 aaPredicted RBP18.26■□□□□ 0.51
SYNE1-236ENST00000537750 FAM177BA6PVY3 158 aa18.25■□□□□ 0.51
SYNE1-236ENST00000537750 KIAA2012Q0VF49 1180 aa18.25■□□□□ 0.51
SYNE1-236ENST00000537750 NOL8Q76FK4 1167 aaKnown RBP18.24■□□□□ 0.51
SYNE1-236ENST00000537750 NEK4P51957 841 aa18.24■□□□□ 0.51
SYNE1-236ENST00000537750 C17orf53Q8N3J3 647 aaPredicted RBP18.24■□□□□ 0.51
SYNE1-236ENST00000537750 CCDC94Q9BW85 323 aaPredicted RBP18.24■□□□□ 0.51
SYNE1-236ENST00000537750 TSPY26PQ9H489 355 aa18.24■□□□□ 0.51
SYNE1-236ENST00000537750 TMX3Q96JJ7 454 aa18.24■□□□□ 0.51
SYNE1-236ENST00000537750 GDPD2Q9HCC8 539 aa18.24■□□□□ 0.51
SYNE1-236ENST00000537750 MINK1Q8N4C8 1332 aaPredicted RBP18.23■□□□□ 0.51
SYNE1-236ENST00000537750 FANCAO15360 1455 aa18.23■□□□□ 0.51
SYNE1-236ENST00000537750 NFE2L2Q16236 605 aa18.23■□□□□ 0.51
SYNE1-236ENST00000537750 GGT6Q6P531 493 aa18.23■□□□□ 0.51
SYNE1-236ENST00000537750 LRRC7Q96NW7 1537 aa18.22■□□□□ 0.51
SYNE1-236ENST00000537750 MBD3O95983 291 aa18.22■□□□□ 0.51
SYNE1-236ENST00000537750 TPRNQ4KMQ1 711 aa18.22■□□□□ 0.51
SYNE1-236ENST00000537750 MYRIPQ8NFW9 859 aa18.22■□□□□ 0.51
SYNE1-236ENST00000537750 CHD1O14646 1710 aa18.22■□□□□ 0.51
SYNE1-236ENST00000537750 GNAI1P63096 354 aa18.22■□□□□ 0.51
SYNE1-236ENST00000537750 CASC1Q6TDU7 716 aa18.22■□□□□ 0.51
SYNE1-236ENST00000537750 API5Q9BZZ5 524 aaKnown RBP18.22■□□□□ 0.51
SYNE1-236ENST00000537750 ZNF710Q8N1W2 664 aa18.21■□□□□ 0.51
SYNE1-236ENST00000537750 CFAP44Q96MT7 982 aa18.21■□□□□ 0.51
SYNE1-236ENST00000537750 TERF2IPQ9NYB0 399 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms