RNA–Protein interactions for RNA: ENST00000537002.5

PTPRD-213, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 8,224 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-213ENST00000537002 DDIT3P35638 169 aa6.48□□□□□ -1.37
PTPRD-213ENST00000537002 IFFO2Q5TF58 517 aa6.48□□□□□ -1.37
PTPRD-213ENST00000537002 EIF4G3O43432 1585 aaKnown RBP6.48□□□□□ -1.37
PTPRD-213ENST00000537002 TRIM5Q9C035 493 aa6.47□□□□□ -1.37
PTPRD-213ENST00000537002 ASXL1Q8IXJ9 1541 aa6.47□□□□□ -1.37
PTPRD-213ENST00000537002 CAVIN2O95810 425 aa6.47□□□□□ -1.37
PTPRD-213ENST00000537002 ADGRL1O94910 1474 aa6.47□□□□□ -1.37
PTPRD-213ENST00000537002 GCC1Q96CN9 775 aa6.47□□□□□ -1.37
PTPRD-213ENST00000537002 PRAG1Q86YV5 1406 aa6.47□□□□□ -1.37
PTPRD-213ENST00000537002 SSFA2P28290 1259 aa6.47□□□□□ -1.37
PTPRD-213ENST00000537002 PPP2R1AP30153 589 aa6.47□□□□□ -1.37
PTPRD-213ENST00000537002 YY1AP1Q9H869 796 aa6.47□□□□□ -1.37
PTPRD-213ENST00000537002 PAXBP1Q9Y5B6 917 aa6.47□□□□□ -1.37
PTPRD-213ENST00000537002 PLCD3Q8N3E9 789 aa6.46□□□□□ -1.37
PTPRD-213ENST00000537002 SYNMO15061 1565 aa6.46□□□□□ -1.37
PTPRD-213ENST00000537002 MVPQ14764 893 aaKnown RBP6.46□□□□□ -1.37
PTPRD-213ENST00000537002 BAG4O95429 457 aaKnown RBP6.46□□□□□ -1.38
PTPRD-213ENST00000537002 SF3A1Q15459 793 aaKnown RBP6.46□□□□□ -1.38
PTPRD-213ENST00000537002 SMC3Q9UQE7 1217 aa6.46□□□□□ -1.38
PTPRD-213ENST00000537002 IRX3P78415 501 aaPredicted RBP6.46□□□□□ -1.38
PTPRD-213ENST00000537002 PRDM15P57071 1507 aaPredicted RBP6.46□□□□□ -1.38
PTPRD-213ENST00000537002 CALRP27797 417 aaKnown RBP6.46□□□□□ -1.38
PTPRD-213ENST00000537002 SKIDA1Q1XH10 827 aa6.46□□□□□ -1.38
PTPRD-213ENST00000537002 EFCC1Q9HA90 598 aa6.46□□□□□ -1.38
PTPRD-213ENST00000537002 CEP170Q5SW79 1584 aa6.46□□□□□ -1.38
PTPRD-213ENST00000537002 POLR3AO14802 1390 aaPredicted RBP6.46□□□□□ -1.38
PTPRD-213ENST00000537002 CD109Q6YHK3 1445 aa6.46□□□□□ -1.38
PTPRD-213ENST00000537002 CLGNO14967 610 aa6.45□□□□□ -1.38
PTPRD-213ENST00000537002 ABCC11Q96J66 1382 aa6.45□□□□□ -1.38
PTPRD-213ENST00000537002 C1orf115Q9H7X2 142 aa6.45□□□□□ -1.38
PTPRD-213ENST00000537002 TROQ12816 1431 aaPredicted RBP6.45□□□□□ -1.38
PTPRD-213ENST00000537002 KIF3BO15066 747 aa6.45□□□□□ -1.38
PTPRD-213ENST00000537002 FIBPO43427 364 aa6.45□□□□□ -1.38
PTPRD-213ENST00000537002 NEMFO60524 1076 aa6.45□□□□□ -1.38
PTPRD-213ENST00000537002 LEKR1Q6ZMV7 388 aa6.45□□□□□ -1.38
PTPRD-213ENST00000537002 KRT222Q8N1A0 295 aa6.45□□□□□ -1.38
PTPRD-213ENST00000537002 RTF1Q92541 710 aaKnown RBP6.45□□□□□ -1.38
PTPRD-213ENST00000537002 STK26Q9P289 416 aa6.45□□□□□ -1.38
PTPRD-213ENST00000537002 FOSBP53539 338 aa6.45□□□□□ -1.38
PTPRD-213ENST00000537002 FKBP5Q13451 457 aaPredicted RBP6.45□□□□□ -1.38
PTPRD-213ENST00000537002 HSP90B2PQ58FF3 399 aa6.45□□□□□ -1.38
PTPRD-213ENST00000537002 ZNF692Q9BU19 519 aaPredicted RBP6.45□□□□□ -1.38
PTPRD-213ENST00000537002 EPB41L2O43491 1005 aaKnown RBP6.44□□□□□ -1.38
PTPRD-213ENST00000537002 IGSF3O75054 1194 aa6.44□□□□□ -1.38
PTPRD-213ENST00000537002 NEK4P51957 841 aa6.44□□□□□ -1.38
PTPRD-213ENST00000537002 RUNDC1Q96C34 613 aa6.44□□□□□ -1.38
PTPRD-213ENST00000537002 ZSCAN23Q3MJ62 389 aa6.44□□□□□ -1.38
PTPRD-213ENST00000537002 STK31Q9BXU1 1019 aa6.44□□□□□ -1.38
PTPRD-213ENST00000537002 SPTLC3Q9NUV7 552 aa6.44□□□□□ -1.38
PTPRD-213ENST00000537002 V9GYY5 206 aaPredicted RBP6.44□□□□□ -1.38
PTPRD-213ENST00000537002 IQGAP2Q13576 1575 aa6.44□□□□□ -1.38
PTPRD-213ENST00000537002 HDGFL2Q7Z4V5 671 aaPredicted RBP6.44□□□□□ -1.38
PTPRD-213ENST00000537002 H0YHG0 523 aa6.43□□□□□ -1.38
PTPRD-213ENST00000537002 NOLC1Q14978 699 aaKnown RBP eCLIP6.43□□□□□ -1.38
PTPRD-213ENST00000537002 IL16Q14005 1332 aa6.43□□□□□ -1.38
PTPRD-213ENST00000537002 AK7Q96M32 723 aa6.43□□□□□ -1.38
PTPRD-213ENST00000537002 RBM27Q9P2N5 1060 aaKnown RBP6.43□□□□□ -1.38
PTPRD-213ENST00000537002 GTF2E1P29083 439 aaPredicted RBP6.43□□□□□ -1.38
PTPRD-213ENST00000537002 SLFNL1Q499Z3 407 aa6.43□□□□□ -1.38
PTPRD-213ENST00000537002 ABCC10Q5T3U5 1492 aa6.43□□□□□ -1.38
PTPRD-213ENST00000537002 TEX2Q8IWB9 1127 aa6.43□□□□□ -1.38
PTPRD-213ENST00000537002 GPATCH3Q96I76 525 aa6.43□□□□□ -1.38
PTPRD-213ENST00000537002 IGHDP01880 384 aa6.42□□□□□ -1.38
PTPRD-213ENST00000537002 TPM1P09493 284 aa6.42□□□□□ -1.38
PTPRD-213ENST00000537002 RARSP54136 660 aaKnown RBP6.42□□□□□ -1.38
PTPRD-213ENST00000537002 ANKRD36BQ8N2N9 1353 aa6.42□□□□□ -1.38
PTPRD-213ENST00000537002 VGLL3A8MV65 326 aa6.42□□□□□ -1.38
PTPRD-213ENST00000537002 SMC2O95347 1197 aa6.42□□□□□ -1.38
PTPRD-213ENST00000537002 ACBD3Q9H3P7 528 aa6.42□□□□□ -1.38
PTPRD-213ENST00000537002 ATP10AO60312 1499 aa6.42□□□□□ -1.38
PTPRD-213ENST00000537002 BRD2P25440 801 aaKnown RBP6.42□□□□□ -1.38
PTPRD-213ENST00000537002 GPATCH11Q8N954 259 aa6.42□□□□□ -1.38
PTPRD-213ENST00000537002 ZNF830Q96NB3 372 aaPredicted RBP6.42□□□□□ -1.38
PTPRD-213ENST00000537002 SMTNL1A8MU46 457 aa6.42□□□□□ -1.38
PTPRD-213ENST00000537002 RDXP35241 583 aaKnown RBP6.42□□□□□ -1.38
PTPRD-213ENST00000537002 HSP90AB3PQ58FF7 597 aa6.42□□□□□ -1.38
PTPRD-213ENST00000537002 GAS2L3Q86XJ1 694 aa6.42□□□□□ -1.38
PTPRD-213ENST00000537002 PES1O00541 588 aaKnown RBP6.42□□□□□ -1.38
PTPRD-213ENST00000537002 HNRNPMP52272 730 aaKnown RBP eCLIP6.42□□□□□ -1.38
PTPRD-213ENST00000537002 BRMS1Q9HCU9 246 aa6.42□□□□□ -1.38
PTPRD-213ENST00000537002 NSD2O96028 1365 aa6.42□□□□□ -1.38
PTPRD-213ENST00000537002 INTS4Q96HW7 963 aaKnown RBP6.42□□□□□ -1.38
PTPRD-213ENST00000537002 TRPM1Q7Z4N2 1603 aa6.41□□□□□ -1.38
PTPRD-213ENST00000537002 EXOSC9Q06265 439 aaKnown RBP6.41□□□□□ -1.38
PTPRD-213ENST00000537002 PDILTQ8N807 584 aa6.41□□□□□ -1.38
PTPRD-213ENST00000537002 TSR2Q969E8 191 aaKnown RBP6.41□□□□□ -1.38
PTPRD-213ENST00000537002 ZFP91Q96JP5 570 aaPredicted RBP6.41□□□□□ -1.38
PTPRD-213ENST00000537002 CCDC192P0DO97 292 aa6.41□□□□□ -1.38
PTPRD-213ENST00000537002 NUTM2DQ5VT03 806 aaPredicted RBP6.41□□□□□ -1.38
PTPRD-213ENST00000537002 TXLNBQ8N3L3 684 aa6.41□□□□□ -1.38
PTPRD-213ENST00000537002 TCP11L2Q8N4U5 519 aa6.41□□□□□ -1.38
PTPRD-213ENST00000537002 NOB1Q9ULX3 412 aaKnown RBP6.41□□□□□ -1.38
PTPRD-213ENST00000537002 CCDC73Q6ZRK6 1079 aa6.41□□□□□ -1.38
PTPRD-213ENST00000537002 BCCIPQ9P287 314 aaKnown RBP eCLIP6.41□□□□□ -1.38
PTPRD-213ENST00000537002 FAM177BA6PVY3 158 aa6.41□□□□□ -1.38
PTPRD-213ENST00000537002 CCP110O43303 1012 aa6.41□□□□□ -1.38
PTPRD-213ENST00000537002 RTEL1-TNFRSF6BF6WH68 1400 aa6.41□□□□□ -1.38
PTPRD-213ENST00000537002 API5Q9BZZ5 524 aaKnown RBP6.41□□□□□ -1.38
PTPRD-213ENST00000537002 CTIFO43310 598 aaKnown RBP6.41□□□□□ -1.38
PTPRD-213ENST00000537002 CCDC70Q6NSX1 233 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms