RNA–Protein interactions for RNA: ENST00000535375.1

PRKDC-205, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 464 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-205ENST00000535375 NBPF20Q3BBV1 942 aa10.9□□□□□ -0.66
PRKDC-205ENST00000535375 ZNF592Q92610 1267 aa10.9□□□□□ -0.66
PRKDC-205ENST00000535375 KCTD15Q96SI1 283 aaPredicted RBP10.9□□□□□ -0.66
PRKDC-205ENST00000535375 WWC1Q8IX03 1113 aa10.89□□□□□ -0.67
PRKDC-205ENST00000535375 SMCPP49901 116 aaPredicted RBP10.88□□□□□ -0.67
PRKDC-205ENST00000535375 GPR37L1O60883 481 aa10.87□□□□□ -0.67
PRKDC-205ENST00000535375 MCCD1P59942 119 aaPredicted RBP10.87□□□□□ -0.67
PRKDC-205ENST00000535375 CAPN5O15484 640 aaPredicted RBP10.86□□□□□ -0.67
PRKDC-205ENST00000535375 WDR4P57081 412 aaKnown RBP10.86□□□□□ -0.67
PRKDC-205ENST00000535375 COG6Q9Y2V7 657 aa10.86□□□□□ -0.67
PRKDC-205ENST00000535375 POTECB2RU33 542 aa10.85□□□□□ -0.67
PRKDC-205ENST00000535375 WASHC4Q2M389 1173 aa10.85□□□□□ -0.67
PRKDC-205ENST00000535375 CCDC116Q8IYX3 515 aa10.85□□□□□ -0.67
PRKDC-205ENST00000535375 NR3C2P08235 984 aa10.84□□□□□ -0.67
PRKDC-205ENST00000535375 RAB15P59190 212 aa10.84□□□□□ -0.67
PRKDC-205ENST00000535375 EIF4G2P78344 907 aaKnown RBP eCLIP10.84□□□□□ -0.67
PRKDC-205ENST00000535375 DHX9Q08211 1270 aaKnown RBP10.84□□□□□ -0.67
PRKDC-205ENST00000535375 IRF5Q13568 498 aa10.84□□□□□ -0.67
PRKDC-205ENST00000535375 DACH1Q9UI36 760 aa10.84□□□□□ -0.67
PRKDC-205ENST00000535375 EMILIN1Q9Y6C2 1016 aa10.84□□□□□ -0.67
PRKDC-205ENST00000535375 PGPEP1Q9NXJ5 209 aa10.83□□□□□ -0.68
PRKDC-205ENST00000535375 ZIC2O95409 532 aaPredicted RBP10.82□□□□□ -0.68
PRKDC-205ENST00000535375 VAC14Q08AM6 782 aa10.82□□□□□ -0.68
PRKDC-205ENST00000535375 POM121Q96HA1 1249 aa10.82□□□□□ -0.68
PRKDC-205ENST00000535375 TIMP2P16035 220 aa10.81□□□□□ -0.68
PRKDC-205ENST00000535375 INTS6LQ5JSJ4 861 aaKnown RBP10.81□□□□□ -0.68
PRKDC-205ENST00000535375 TRIM52Q96A61 297 aa10.81□□□□□ -0.68
PRKDC-205ENST00000535375 PPP1R26Q5T8A7 1209 aaPredicted RBP10.8□□□□□ -0.68
PRKDC-205ENST00000535375 RNF20Q5VTR2 975 aa10.8□□□□□ -0.68
PRKDC-205ENST00000535375 ITPKCQ96DU7 683 aa10.8□□□□□ -0.68
PRKDC-205ENST00000535375 GMPR2Q9P2T1 348 aaKnown RBP10.8□□□□□ -0.68
PRKDC-205ENST00000535375 GIGYF1O75420 1035 aaPredicted RBP10.79□□□□□ -0.68
PRKDC-205ENST00000535375 SEPT12Q8IYM1 358 aa10.79□□□□□ -0.68
PRKDC-205ENST00000535375 KLF16Q9BXK1 252 aaPredicted RBP10.79□□□□□ -0.68
PRKDC-205ENST00000535375 ZFAND3Q9H8U3 227 aa10.79□□□□□ -0.68
PRKDC-205ENST00000535375 CCDC125Q86Z20 511 aa10.78□□□□□ -0.68
PRKDC-205ENST00000535375 ZNF775Q96BV0 537 aaPredicted RBP10.78□□□□□ -0.68
PRKDC-205ENST00000535375 ATP13A2Q9NQ11 1180 aa10.78□□□□□ -0.68
PRKDC-205ENST00000535375 ESPNB1AK53 854 aa10.77□□□□□ -0.69
PRKDC-205ENST00000535375 C11orf95C9JLR9 678 aaPredicted RBP10.77□□□□□ -0.69
PRKDC-205ENST00000535375 SEMA3FQ13275 785 aa10.77□□□□□ -0.69
PRKDC-205ENST00000535375 SOX11P35716 441 aa10.76□□□□□ -0.69
PRKDC-205ENST00000535375 ERVH48-1M5A8F1 160 aa10.75□□□□□ -0.69
PRKDC-205ENST00000535375 UPP2O95045 317 aa10.75□□□□□ -0.69
PRKDC-205ENST00000535375 CLUAP1Q96AJ1 413 aa10.75□□□□□ -0.69
PRKDC-205ENST00000535375 CEP126Q9P2H0 1117 aa10.75□□□□□ -0.69
PRKDC-205ENST00000535375 GTF3C3Q9Y5Q9 886 aa10.75□□□□□ -0.69
PRKDC-205ENST00000535375 BMP1P13497 986 aa10.74□□□□□ -0.69
PRKDC-205ENST00000535375 SCARF1Q14162 830 aa10.74□□□□□ -0.69
PRKDC-205ENST00000535375 ESF1Q9H501 851 aaKnown RBP10.74□□□□□ -0.69
PRKDC-205ENST00000535375 SENP2Q9HC62 589 aa10.74□□□□□ -0.69
PRKDC-205ENST00000535375 TMPRSS4Q9NRS4 437 aa10.74□□□□□ -0.69
PRKDC-205ENST00000535375 SLFNL1Q499Z3 407 aa10.72□□□□□ -0.69
PRKDC-205ENST00000535375 MRPL14Q6P1L8 145 aaKnown RBP10.72□□□□□ -0.69
PRKDC-205ENST00000535375 ZNF784Q8NCA9 323 aaPredicted RBP10.72□□□□□ -0.69
PRKDC-205ENST00000535375 PROSER2Q86WR7 435 aaPredicted RBP10.71□□□□□ -0.69
PRKDC-205ENST00000535375 KIFC2Q96AC6 838 aa10.71□□□□□ -0.69
PRKDC-205ENST00000535375 CBLBQ13191 982 aa10.7□□□□□ -0.7
PRKDC-205ENST00000535375 TRIM46Q7Z4K8 759 aa10.7□□□□□ -0.7
PRKDC-205ENST00000535375 MEIOBQ8N635 442 aa10.7□□□□□ -0.7
PRKDC-205ENST00000535375 TRIM47Q96LD4 638 aa10.7□□□□□ -0.7
PRKDC-205ENST00000535375 TSEN34Q9BSV6 310 aaKnown RBP10.7□□□□□ -0.7
PRKDC-205ENST00000535375 CYLDQ9NQC7 956 aa10.7□□□□□ -0.7
PRKDC-205ENST00000535375 PCDHB11Q9Y5F2 797 aa10.7□□□□□ -0.7
PRKDC-205ENST00000535375 BMP2P12643 396 aa10.69□□□□□ -0.7
PRKDC-205ENST00000535375 C6orf118Q5T5N4 469 aa10.69□□□□□ -0.7
PRKDC-205ENST00000535375 A6NJR5 290 aa10.68□□□□□ -0.7
PRKDC-205ENST00000535375 Q6ZVU0 165 aa10.68□□□□□ -0.7
PRKDC-205ENST00000535375 RNF135Q8IUD6 432 aa10.68□□□□□ -0.7
PRKDC-205ENST00000535375 ZFP42Q96MM3 310 aa10.68□□□□□ -0.7
PRKDC-205ENST00000535375 PURBQ96QR8 312 aaKnown RBP10.68□□□□□ -0.7
PRKDC-205ENST00000535375 LINC00528Q8N1L1 170 aa10.67□□□□□ -0.7
PRKDC-205ENST00000535375 SNRPBP14678 240 aaKnown RBP10.66□□□□□ -0.7
PRKDC-205ENST00000535375 LILRA1O75019 489 aa10.65□□□□□ -0.7
PRKDC-205ENST00000535375 MYCP01106 439 aaPredicted RBP10.65□□□□□ -0.7
PRKDC-205ENST00000535375 RELBQ01201 579 aa10.65□□□□□ -0.7
PRKDC-205ENST00000535375 CC2D2BQ6DHV5 1058 aa10.65□□□□□ -0.7
PRKDC-205ENST00000535375 AGBL1Q96MI9 1066 aa10.65□□□□□ -0.7
PRKDC-205ENST00000535375 ALG2Q9H553 416 aa10.65□□□□□ -0.7
PRKDC-205ENST00000535375 POM121CA8CG34 1229 aa10.64□□□□□ -0.71
PRKDC-205ENST00000535375 HDGFL1Q5TGJ6 251 aa10.64□□□□□ -0.71
PRKDC-205ENST00000535375 DOLKQ9UPQ8 538 aa10.64□□□□□ -0.71
PRKDC-205ENST00000535375 ADH1AP07327 375 aa10.63□□□□□ -0.71
PRKDC-205ENST00000535375 ERVK-9P63128 1117 aa10.63□□□□□ -0.71
PRKDC-205ENST00000535375 PHTF2Q8N3S3 785 aa10.63□□□□□ -0.71
PRKDC-205ENST00000535375 FNBP4Q8N3X1 1017 aaPredicted RBP10.63□□□□□ -0.71
PRKDC-205ENST00000535375 CCDC85AQ96PX6 553 aaPredicted RBP10.63□□□□□ -0.71
PRKDC-205ENST00000535375 ADD1P35611 737 aaKnown RBP10.62□□□□□ -0.71
PRKDC-205ENST00000535375 ATP5J2-PTCD1G3V325 749 aa10.61□□□□□ -0.71
PRKDC-205ENST00000535375 USP4Q13107 963 aa10.61□□□□□ -0.71
PRKDC-205ENST00000535375 MAP7D1Q3KQU3 841 aa10.61□□□□□ -0.71
PRKDC-205ENST00000535375 TREML4Q6UXN2 200 aa10.61□□□□□ -0.71
PRKDC-205ENST00000535375 SIRT1Q96EB6 747 aa10.61□□□□□ -0.71
PRKDC-205ENST00000535375 ZNF395Q9H8N7 513 aaPredicted RBP10.61□□□□□ -0.71
PRKDC-205ENST00000535375 PTGIRP43119 386 aa10.6□□□□□ -0.71
PRKDC-205ENST00000535375 SCTRP47872 440 aa10.6□□□□□ -0.71
PRKDC-205ENST00000535375 OXLD1Q5BKU9 147 aa10.6□□□□□ -0.71
PRKDC-205ENST00000535375 CYP2U1Q7Z449 544 aa10.6□□□□□ -0.71
PRKDC-205ENST00000535375 CDCA7Q9BWT1 371 aaPredicted RBP10.6□□□□□ -0.71
PRKDC-205ENST00000535375 MAN1A2O60476 641 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms