RNA–Protein interactions for RNA: ENST00000532918.4

COLCA1-203, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,366 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-203ENST00000532918 CCDC70Q6NSX1 233 aa12.86□□□□□ -0.35
COLCA1-203ENST00000532918 BICDL1Q6ZP65 573 aa12.86□□□□□ -0.35
COLCA1-203ENST00000532918 CAMSAP2Q08AD1 1489 aa12.86□□□□□ -0.35
COLCA1-203ENST00000532918 WDR63Q8IWG1 891 aa12.86□□□□□ -0.35
COLCA1-203ENST00000532918 KRT28Q7Z3Y7 464 aa12.86□□□□□ -0.35
COLCA1-203ENST00000532918 BICD2Q8TD16 824 aa12.86□□□□□ -0.35
COLCA1-203ENST00000532918 CEP126Q9P2H0 1117 aa12.86□□□□□ -0.35
COLCA1-203ENST00000532918 MTMR7Q9Y216 660 aa12.86□□□□□ -0.35
COLCA1-203ENST00000532918 IPO9Q96P70 1041 aaKnown RBP12.86□□□□□ -0.35
COLCA1-203ENST00000532918 FAM135AQ9P2D6 1515 aa12.86□□□□□ -0.35
COLCA1-203ENST00000532918 RRS1Q15050 365 aaKnown RBP12.85□□□□□ -0.35
COLCA1-203ENST00000532918 LNPKQ9C0E8 428 aa12.85□□□□□ -0.35
COLCA1-203ENST00000532918 CCDC73Q6ZRK6 1079 aa12.85□□□□□ -0.35
COLCA1-203ENST00000532918 ZNF428Q96B54 188 aa12.85□□□□□ -0.35
COLCA1-203ENST00000532918 TEX13AQ9BXU3 409 aaPredicted RBP12.85□□□□□ -0.35
COLCA1-203ENST00000532918 ATP2B2Q01814 1243 aa12.85□□□□□ -0.35
COLCA1-203ENST00000532918 ZSCAN29Q8IWY8 852 aaPredicted RBP12.85□□□□□ -0.35
COLCA1-203ENST00000532918 GCC1Q96CN9 775 aa12.85□□□□□ -0.35
COLCA1-203ENST00000532918 PKNOX2Q96KN3 472 aa12.85□□□□□ -0.35
COLCA1-203ENST00000532918 SLC4A3P48751 1232 aa12.84□□□□□ -0.35
COLCA1-203ENST00000532918 VPS37CA5D8V6 355 aaPredicted RBP12.84□□□□□ -0.35
COLCA1-203ENST00000532918 FOXO3O43524 673 aa12.84□□□□□ -0.35
COLCA1-203ENST00000532918 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.84□□□□□ -0.35
COLCA1-203ENST00000532918 WASLO00401 505 aaPredicted RBP12.84□□□□□ -0.35
COLCA1-203ENST00000532918 DDX49Q9Y6V7 483 aaKnown RBP12.84□□□□□ -0.35
COLCA1-203ENST00000532918 WAPLQ7Z5K2 1190 aa12.83□□□□□ -0.36
COLCA1-203ENST00000532918 CDK5RAP3Q96JB5 506 aa12.83□□□□□ -0.36
COLCA1-203ENST00000532918 TXLNAP40222 546 aa12.83□□□□□ -0.36
COLCA1-203ENST00000532918 RRP12Q5JTH9 1297 aaKnown RBP12.83□□□□□ -0.36
COLCA1-203ENST00000532918 ZNF287Q9HBT7 754 aa12.83□□□□□ -0.36
COLCA1-203ENST00000532918 DHX29Q7Z478 1369 aaKnown RBP12.83□□□□□ -0.36
COLCA1-203ENST00000532918 A0A087WZG4 1122 aa12.83□□□□□ -0.36
COLCA1-203ENST00000532918 URB2Q14146 1524 aaKnown RBP12.82□□□□□ -0.36
COLCA1-203ENST00000532918 FBXO31Q5XUX0 539 aaPredicted RBP12.82□□□□□ -0.36
COLCA1-203ENST00000532918 NFE2L2Q16236 605 aa12.82□□□□□ -0.36
COLCA1-203ENST00000532918 AK7Q96M32 723 aa12.82□□□□□ -0.36
COLCA1-203ENST00000532918 EPS15P42566 896 aa12.82□□□□□ -0.36
COLCA1-203ENST00000532918 NUCB2P80303 420 aa12.82□□□□□ -0.36
COLCA1-203ENST00000532918 PDE4AP27815 886 aa12.82□□□□□ -0.36
COLCA1-203ENST00000532918 IDI1Q13907 227 aa12.81□□□□□ -0.36
COLCA1-203ENST00000532918 CT47A1Q5JQC4 288 aaPredicted RBP12.81□□□□□ -0.36
COLCA1-203ENST00000532918 SOGA3Q5TF21 947 aa12.81□□□□□ -0.36
COLCA1-203ENST00000532918 GPS2Q13227 327 aa12.81□□□□□ -0.36
COLCA1-203ENST00000532918 RPGRQ92834 1020 aaKnown RBP12.81□□□□□ -0.36
COLCA1-203ENST00000532918 RAI14Q9P0K7 980 aa12.81□□□□□ -0.36
COLCA1-203ENST00000532918 AKAP2Q9Y2D5 859 aa12.81□□□□□ -0.36
COLCA1-203ENST00000532918 ODF2Q5BJF6 829 aa12.81□□□□□ -0.36
COLCA1-203ENST00000532918 CAVIN4Q5BKX8 364 aa12.81□□□□□ -0.36
COLCA1-203ENST00000532918 PANK1Q8TE04 598 aa12.81□□□□□ -0.36
COLCA1-203ENST00000532918 BCL11BQ9C0K0 894 aaPredicted RBP12.81□□□□□ -0.36
COLCA1-203ENST00000532918 LARP1Q6PKG0 1096 aaKnown RBP12.8□□□□□ -0.36
COLCA1-203ENST00000532918 LRRCC1Q9C099 1032 aa12.8□□□□□ -0.36
COLCA1-203ENST00000532918 NSD3Q9BZ95 1437 aa12.8□□□□□ -0.36
COLCA1-203ENST00000532918 TRIM22Q8IYM9 498 aa12.8□□□□□ -0.36
COLCA1-203ENST00000532918 CTNNA3Q9UI47 895 aa12.8□□□□□ -0.36
COLCA1-203ENST00000532918 SLF2Q8IX21 1173 aa12.8□□□□□ -0.36
COLCA1-203ENST00000532918 NPHP3Q7Z494 1330 aa12.8□□□□□ -0.36
COLCA1-203ENST00000532918 IFIT1P09914 478 aaKnown RBP12.79□□□□□ -0.36
COLCA1-203ENST00000532918 PDE3AQ14432 1141 aa12.79□□□□□ -0.36
COLCA1-203ENST00000532918 LRP2BPQ9P2M1 347 aa12.79□□□□□ -0.36
COLCA1-203ENST00000532918 MPHOSPH10O00566 681 aaKnown RBP12.79□□□□□ -0.36
COLCA1-203ENST00000532918 PDCP20941 246 aa12.79□□□□□ -0.36
COLCA1-203ENST00000532918 MCM2P49736 904 aa12.79□□□□□ -0.36
COLCA1-203ENST00000532918 PTCD1O75127 700 aaKnown RBP12.79□□□□□ -0.36
COLCA1-203ENST00000532918 FOXD4L6Q3SYB3 417 aaPredicted RBP12.79□□□□□ -0.36
COLCA1-203ENST00000532918 FOXD4L3Q6VB84 417 aaPredicted RBP12.79□□□□□ -0.36
COLCA1-203ENST00000532918 MPRIPQ6WCQ1 1025 aa12.79□□□□□ -0.36
COLCA1-203ENST00000532918 NOB1Q9ULX3 412 aaKnown RBP12.79□□□□□ -0.36
COLCA1-203ENST00000532918 SASS6Q6UVJ0 657 aa12.79□□□□□ -0.36
COLCA1-203ENST00000532918 OLFM4Q6UX06 510 aa12.79□□□□□ -0.36
COLCA1-203ENST00000532918 CCDC69A6NI79 296 aa12.78□□□□□ -0.36
COLCA1-203ENST00000532918 SIL1Q9H173 461 aa12.78□□□□□ -0.36
COLCA1-203ENST00000532918 TTC21BQ7Z4L5 1316 aa12.78□□□□□ -0.36
COLCA1-203ENST00000532918 KRT18P05783 430 aaKnown RBP12.78□□□□□ -0.36
COLCA1-203ENST00000532918 TAF7Q15545 349 aaPredicted RBP12.78□□□□□ -0.36
COLCA1-203ENST00000532918 ZNF608Q9ULD9 1512 aaPredicted RBP12.78□□□□□ -0.36
COLCA1-203ENST00000532918 ASXL2Q76L83 1435 aa12.78□□□□□ -0.36
COLCA1-203ENST00000532918 ANKRD1Q15327 319 aa12.78□□□□□ -0.36
COLCA1-203ENST00000532918 FMNL2Q96PY5 1086 aa12.78□□□□□ -0.36
COLCA1-203ENST00000532918 NCOA1Q15788 1441 aa12.77□□□□□ -0.36
COLCA1-203ENST00000532918 IFNL2Q8IZJ0 200 aa12.77□□□□□ -0.36
COLCA1-203ENST00000532918 PATL2C9JE40 543 aaKnown RBP12.77□□□□□ -0.36
COLCA1-203ENST00000532918 NOM1Q5C9Z4 860 aaKnown RBP12.77□□□□□ -0.36
COLCA1-203ENST00000532918 ANKIB1Q9P2G1 1089 aa12.77□□□□□ -0.36
COLCA1-203ENST00000532918 METTL24Q5JXM2 366 aa12.77□□□□□ -0.37
COLCA1-203ENST00000532918 TEX35Q5T0J7 233 aa12.77□□□□□ -0.37
COLCA1-203ENST00000532918 TDO2P48775 406 aa12.77□□□□□ -0.37
COLCA1-203ENST00000532918 NAT10Q9H0A0 1025 aaKnown RBP12.77□□□□□ -0.37
COLCA1-203ENST00000532918 UHRF1BP1LA0JNW5 1464 aa12.77□□□□□ -0.37
COLCA1-203ENST00000532918 OFD1O75665 1012 aa12.76□□□□□ -0.37
COLCA1-203ENST00000532918 FKBP4Q02790 459 aaKnown RBP eCLIP12.76□□□□□ -0.37
COLCA1-203ENST00000532918 FOSBP53539 338 aa12.76□□□□□ -0.37
COLCA1-203ENST00000532918 PIP4K2AP48426 406 aaPredicted RBP12.76□□□□□ -0.37
COLCA1-203ENST00000532918 RDXP35241 583 aaKnown RBP12.76□□□□□ -0.37
COLCA1-203ENST00000532918 TSR2Q969E8 191 aaKnown RBP12.76□□□□□ -0.37
COLCA1-203ENST00000532918 ZNF396Q96N95 335 aaPredicted RBP12.76□□□□□ -0.37
COLCA1-203ENST00000532918 SRGAP3O43295 1099 aa12.75□□□□□ -0.37
COLCA1-203ENST00000532918 AACSQ86V21 672 aa12.75□□□□□ -0.37
COLCA1-203ENST00000532918 JMYQ8N9B5 988 aa12.75□□□□□ -0.37
COLCA1-203ENST00000532918 UBAC1Q9BSL1 405 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms