RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 NASPP49321 788 aaPredicted RBP17.66■□□□□ 0.42
USP48-213ENST00000529637 NME9Q86XW9 330 aa17.66■□□□□ 0.42
USP48-213ENST00000529637 KIF16BQ96L93 1317 aa17.66■□□□□ 0.42
USP48-213ENST00000529637 PHACTR3Q96KR7 559 aa17.66■□□□□ 0.42
USP48-213ENST00000529637 LNPKQ9C0E8 428 aa17.66■□□□□ 0.42
USP48-213ENST00000529637 SNX21Q969T3 373 aa17.66■□□□□ 0.42
USP48-213ENST00000529637 NUTM2FA1L443 756 aa17.65■□□□□ 0.42
USP48-213ENST00000529637 NCKAP5LQ9HCH0 1330 aa17.65■□□□□ 0.42
USP48-213ENST00000529637 HDAC1Q13547 482 aaPredicted RBP17.64■□□□□ 0.42
USP48-213ENST00000529637 NCBP3Q53F19 620 aaKnown RBP17.64■□□□□ 0.42
USP48-213ENST00000529637 ZSCAN30Q86W11 494 aa17.64■□□□□ 0.42
USP48-213ENST00000529637 RRS1Q15050 365 aaKnown RBP17.64■□□□□ 0.41
USP48-213ENST00000529637 PPP1R9BQ96SB3 815 aa17.64■□□□□ 0.41
USP48-213ENST00000529637 C1orf115Q9H7X2 142 aa17.64■□□□□ 0.41
USP48-213ENST00000529637 IL16Q14005 1332 aa17.64■□□□□ 0.41
USP48-213ENST00000529637 CCDC173Q0VFZ6 552 aa17.64■□□□□ 0.41
USP48-213ENST00000529637 OFD1O75665 1012 aa17.63■□□□□ 0.41
USP48-213ENST00000529637 SOX12O15370 315 aa17.63■□□□□ 0.41
USP48-213ENST00000529637 SKOR2Q2VWA4 1001 aaPredicted RBP17.62■□□□□ 0.41
USP48-213ENST00000529637 ARID3AQ99856 593 aa17.62■□□□□ 0.41
USP48-213ENST00000529637 FAM13BQ9NYF5 915 aa17.62■□□□□ 0.41
USP48-213ENST00000529637 CD163L1Q9NR16 1453 aa17.62■□□□□ 0.41
USP48-213ENST00000529637 PLPPR3Q6T4P5 718 aa17.62■□□□□ 0.41
USP48-213ENST00000529637 GAS2L2Q8NHY3 880 aa17.62■□□□□ 0.41
USP48-213ENST00000529637 TMEM131LA2VDJ0 1609 aa17.61■□□□□ 0.41
USP48-213ENST00000529637 NFE2L2Q16236 605 aa17.61■□□□□ 0.41
USP48-213ENST00000529637 COG3Q96JB2 828 aa17.61■□□□□ 0.41
USP48-213ENST00000529637 CIZ1Q9ULV3 898 aaPredicted RBP17.61■□□□□ 0.41
USP48-213ENST00000529637 R3HCC1Q9Y3T6 440 aaKnown RBP17.61■□□□□ 0.41
USP48-213ENST00000529637 PREX1Q8TCU6 1659 aa17.61■□□□□ 0.41
USP48-213ENST00000529637 ALKQ9UM73 1620 aa17.61■□□□□ 0.41
USP48-213ENST00000529637 RICTORQ6R327 1708 aa17.61■□□□□ 0.41
USP48-213ENST00000529637 TSPYL6Q8N831 410 aa17.6■□□□□ 0.41
USP48-213ENST00000529637 ZBTB40Q9NUA8 1239 aa17.6■□□□□ 0.41
USP48-213ENST00000529637 DDX49Q9Y6V7 483 aaKnown RBP17.6■□□□□ 0.41
USP48-213ENST00000529637 COL3A1P02461 1466 aaPredicted RBP17.6■□□□□ 0.41
USP48-213ENST00000529637 ADGRB2O60241 1585 aa17.6■□□□□ 0.41
USP48-213ENST00000529637 WASLO00401 505 aaPredicted RBP17.6■□□□□ 0.41
USP48-213ENST00000529637 ANKRD45Q5TZF3 282 aa17.6■□□□□ 0.41
USP48-213ENST00000529637 PRDM4Q9UKN5 801 aa17.6■□□□□ 0.41
USP48-213ENST00000529637 RIMS2Q9UQ26 1411 aa17.59■□□□□ 0.41
USP48-213ENST00000529637 MSNP26038 577 aaKnown RBP17.59■□□□□ 0.41
USP48-213ENST00000529637 AK9Q5TCS8 1911 aa17.59■□□□□ 0.41
USP48-213ENST00000529637 DCTN1Q14203 1278 aa17.59■□□□□ 0.41
USP48-213ENST00000529637 NUDT16Q96DE0 195 aaKnown RBP17.59■□□□□ 0.41
USP48-213ENST00000529637 FAM83GA6ND36 823 aa17.58■□□□□ 0.41
USP48-213ENST00000529637 XPCQ01831 940 aaPredicted RBP17.58■□□□□ 0.41
USP48-213ENST00000529637 CALD1Q05682 793 aaKnown RBP17.58■□□□□ 0.41
USP48-213ENST00000529637 NUCB1Q02818 461 aa17.58■□□□□ 0.4
USP48-213ENST00000529637 ARHGEF40Q8TER5 1519 aa17.57■□□□□ 0.4
USP48-213ENST00000529637 GNAI1P63096 354 aa17.57■□□□□ 0.4
USP48-213ENST00000529637 ALDH1L2Q3SY69 923 aa17.57■□□□□ 0.4
USP48-213ENST00000529637 K7ELQ4 463 aaPredicted RBP17.57■□□□□ 0.4
USP48-213ENST00000529637 BAG4O95429 457 aaKnown RBP17.57■□□□□ 0.4
USP48-213ENST00000529637 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.57■□□□□ 0.4
USP48-213ENST00000529637 TSPOAP1O95153 1857 aa17.57■□□□□ 0.4
USP48-213ENST00000529637 PNPLA6Q8IY17 1366 aa17.56■□□□□ 0.4
USP48-213ENST00000529637 PPIP5K1Q6PFW1 1433 aa17.56■□□□□ 0.4
USP48-213ENST00000529637 NCLP19338 710 aaKnown RBP17.56■□□□□ 0.4
USP48-213ENST00000529637 TWISTNBQ3B726 338 aaPredicted RBP17.56■□□□□ 0.4
USP48-213ENST00000529637 MBIPQ9NS73 344 aa17.56■□□□□ 0.4
USP48-213ENST00000529637 KLHL40Q2TBA0 621 aa17.55■□□□□ 0.4
USP48-213ENST00000529637 CHD1LQ86WJ1 897 aa17.55■□□□□ 0.4
USP48-213ENST00000529637 VAMP4O75379 141 aa17.55■□□□□ 0.4
USP48-213ENST00000529637 CAVIN1Q6NZI2 390 aaKnown RBP17.55■□□□□ 0.4
USP48-213ENST00000529637 CCDC61Q9Y6R9 512 aa17.55■□□□□ 0.4
USP48-213ENST00000529637 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.55■□□□□ 0.4
USP48-213ENST00000529637 ANP32BQ92688 251 aaKnown RBP17.55■□□□□ 0.4
USP48-213ENST00000529637 RBSNQ9H1K0 784 aa17.55■□□□□ 0.4
USP48-213ENST00000529637 LRRC7Q96NW7 1537 aa17.54■□□□□ 0.4
USP48-213ENST00000529637 MED14O60244 1454 aa17.54■□□□□ 0.4
USP48-213ENST00000529637 PKP1Q13835 747 aa17.54■□□□□ 0.4
USP48-213ENST00000529637 MCTP1Q6DN14 999 aa17.54■□□□□ 0.4
USP48-213ENST00000529637 TBC1D9Q6ZT07 1266 aa17.54■□□□□ 0.4
USP48-213ENST00000529637 IL13P35225 146 aa17.53■□□□□ 0.4
USP48-213ENST00000529637 METP08581 1390 aa17.53■□□□□ 0.4
USP48-213ENST00000529637 CHAMP1Q96JM3 812 aa17.53■□□□□ 0.4
USP48-213ENST00000529637 MRPL50Q8N5N7 158 aaKnown RBP17.52■□□□□ 0.4
USP48-213ENST00000529637 C8orf58Q8NAV2 365 aa17.52■□□□□ 0.4
USP48-213ENST00000529637 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.52■□□□□ 0.4
USP48-213ENST00000529637 A2ML1A8K2U0 1454 aa17.52■□□□□ 0.4
USP48-213ENST00000529637 LMOD3Q0VAK6 560 aa17.52■□□□□ 0.39
USP48-213ENST00000529637 ZSCAN23Q3MJ62 389 aa17.52■□□□□ 0.39
USP48-213ENST00000529637 IFT57Q9NWB7 429 aa17.52■□□□□ 0.39
USP48-213ENST00000529637 FAM135BQ49AJ0 1406 aa17.52■□□□□ 0.39
USP48-213ENST00000529637 GOLGA6L22H0YM25 854 aa17.51■□□□□ 0.39
USP48-213ENST00000529637 BMP2KLQ5H9B9 411 aa17.51■□□□□ 0.39
USP48-213ENST00000529637 UQCRHLA0A096LP55 91 aa17.51■□□□□ 0.39
USP48-213ENST00000529637 UQCRHP07919 91 aa17.51■□□□□ 0.39
USP48-213ENST00000529637 PRIM1P49642 420 aaKnown RBP17.51■□□□□ 0.39
USP48-213ENST00000529637 SULT6B1Q6IMI4 303 aa17.51■□□□□ 0.39
USP48-213ENST00000529637 CHMP4BQ9H444 224 aaKnown RBP17.51■□□□□ 0.39
USP48-213ENST00000529637 APBB1O00213 710 aa17.5■□□□□ 0.39
USP48-213ENST00000529637 HDGFP51858 240 aaKnown RBP17.5■□□□□ 0.39
USP48-213ENST00000529637 AEBP1Q8IUX7 1158 aa17.5■□□□□ 0.39
USP48-213ENST00000529637 ZNF428Q96B54 188 aa17.5■□□□□ 0.39
USP48-213ENST00000529637 RBM27Q9P2N5 1060 aaKnown RBP17.5■□□□□ 0.39
USP48-213ENST00000529637 NOL7Q9UMY1 257 aaKnown RBP17.5■□□□□ 0.39
USP48-213ENST00000529637 ZBTB7BO15156 539 aaPredicted RBP17.49■□□□□ 0.39
USP48-213ENST00000529637 PTMSP20962 102 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms