RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 GLMNQ92990 594 aa11.59□□□□□ -0.55
PCF11-202ENST00000528336 CALR3Q96L12 384 aaKnown RBP11.59□□□□□ -0.55
PCF11-202ENST00000528336 KCTD15Q96SI1 283 aaPredicted RBP11.59□□□□□ -0.55
PCF11-202ENST00000528336 TOR4AQ9NXH8 423 aa11.59□□□□□ -0.55
PCF11-202ENST00000528336 GFRA3O60609 400 aa11.58□□□□□ -0.56
PCF11-202ENST00000528336 GIGYF1O75420 1035 aaPredicted RBP11.58□□□□□ -0.56
PCF11-202ENST00000528336 GRM5P41594 1212 aa11.58□□□□□ -0.56
PCF11-202ENST00000528336 NBPF20Q3BBV1 942 aa11.58□□□□□ -0.56
PCF11-202ENST00000528336 CEP126Q9P2H0 1117 aa11.58□□□□□ -0.56
PCF11-202ENST00000528336 CDV3Q9UKY7 258 aaKnown RBP11.58□□□□□ -0.56
PCF11-202ENST00000528336 WASF2Q9Y6W5 498 aa11.58□□□□□ -0.56
PCF11-202ENST00000528336 MPNDQ8N594 471 aa11.57□□□□□ -0.56
PCF11-202ENST00000528336 MAP4K5Q9Y4K4 846 aa11.57□□□□□ -0.56
PCF11-202ENST00000528336 ADH1CP00326 375 aa11.56□□□□□ -0.56
PCF11-202ENST00000528336 FSHRP23945 695 aa11.56□□□□□ -0.56
PCF11-202ENST00000528336 SMPD1P17405 629 aa11.55□□□□□ -0.56
PCF11-202ENST00000528336 SLFNL1Q499Z3 407 aa11.54□□□□□ -0.56
PCF11-202ENST00000528336 NNTQ13423 1086 aa11.53□□□□□ -0.56
PCF11-202ENST00000528336 INTS6LQ5JSJ4 861 aaKnown RBP11.53□□□□□ -0.56
PCF11-202ENST00000528336 FAM187AA6NFU0 413 aa11.52□□□□□ -0.57
PCF11-202ENST00000528336 ESPNB1AK53 854 aa11.52□□□□□ -0.57
PCF11-202ENST00000528336 NR3C2P08235 984 aa11.52□□□□□ -0.57
PCF11-202ENST00000528336 NR5A1Q13285 461 aa11.52□□□□□ -0.57
PCF11-202ENST00000528336 PIK3CDO00329 1044 aa11.51□□□□□ -0.57
PCF11-202ENST00000528336 RNF135Q8IUD6 432 aa11.51□□□□□ -0.57
PCF11-202ENST00000528336 TSGA10IPQ3SY00 556 aa11.5□□□□□ -0.57
PCF11-202ENST00000528336 RNF20Q5VTR2 975 aa11.5□□□□□ -0.57
PCF11-202ENST00000528336 IRX2Q9BZI1 471 aaPredicted RBP11.5□□□□□ -0.57
PCF11-202ENST00000528336 NRG2O14511 850 aaPredicted RBP11.49□□□□□ -0.57
PCF11-202ENST00000528336 CCDC116Q8IYX3 515 aa11.49□□□□□ -0.57
PCF11-202ENST00000528336 PHTF2Q8N3S3 785 aa11.49□□□□□ -0.57
PCF11-202ENST00000528336 HPS1Q92902 700 aa11.49□□□□□ -0.57
PCF11-202ENST00000528336 C1orf115Q9H7X2 142 aa11.49□□□□□ -0.57
PCF11-202ENST00000528336 ERVH48-1M5A8F1 160 aa11.48□□□□□ -0.57
PCF11-202ENST00000528336 SEPT12Q8IYM1 358 aa11.48□□□□□ -0.57
PCF11-202ENST00000528336 TMPRSS4Q9NRS4 437 aa11.48□□□□□ -0.57
PCF11-202ENST00000528336 SKIP12755 728 aa11.47□□□□□ -0.57
PCF11-202ENST00000528336 PPP1R26Q5T8A7 1209 aaPredicted RBP11.47□□□□□ -0.57
PCF11-202ENST00000528336 CCDC85AQ96PX6 553 aaPredicted RBP11.47□□□□□ -0.57
PCF11-202ENST00000528336 UCN2Q96RP3 112 aa11.47□□□□□ -0.57
PCF11-202ENST00000528336 PCDHB11Q9Y5F2 797 aa11.47□□□□□ -0.57
PCF11-202ENST00000528336 DHX9Q08211 1270 aaKnown RBP11.46□□□□□ -0.57
PCF11-202ENST00000528336 PKDCCQ504Y2 493 aa11.46□□□□□ -0.57
PCF11-202ENST00000528336 TBC1D9Q6ZT07 1266 aa11.46□□□□□ -0.57
PCF11-202ENST00000528336 CCDC97Q96F63 343 aaPredicted RBP11.45□□□□□ -0.58
PCF11-202ENST00000528336 TFIP11Q9UBB9 837 aaKnown RBP11.45□□□□□ -0.58
PCF11-202ENST00000528336 WDR4P57081 412 aaKnown RBP11.44□□□□□ -0.58
PCF11-202ENST00000528336 LAPTM4AQ15012 233 aa11.44□□□□□ -0.58
PCF11-202ENST00000528336 PLPP7Q8NBV4 271 aa11.44□□□□□ -0.58
PCF11-202ENST00000528336 CDCA7Q9BWT1 371 aaPredicted RBP11.44□□□□□ -0.58
PCF11-202ENST00000528336 DOLKQ9UPQ8 538 aa11.44□□□□□ -0.58
PCF11-202ENST00000528336 EMILIN1Q9Y6C2 1016 aa11.44□□□□□ -0.58
PCF11-202ENST00000528336 DGAT1O75907 488 aa11.43□□□□□ -0.58
PCF11-202ENST00000528336 ZIC2O95409 532 aaPredicted RBP11.43□□□□□ -0.58
PCF11-202ENST00000528336 CCDC82Q8N4S0 544 aa11.43□□□□□ -0.58
PCF11-202ENST00000528336 PPP1R12CQ9BZL4 782 aa11.43□□□□□ -0.58
PCF11-202ENST00000528336 CYLDQ9NQC7 956 aa11.43□□□□□ -0.58
PCF11-202ENST00000528336 PGPEP1Q9NXJ5 209 aa11.43□□□□□ -0.58
PCF11-202ENST00000528336 PALM3A6NDB9 673 aaPredicted RBP11.42□□□□□ -0.58
PCF11-202ENST00000528336 OXLD1Q5BKU9 147 aa11.42□□□□□ -0.58
PCF11-202ENST00000528336 DEPDC4Q8N2C3 294 aa11.42□□□□□ -0.58
PCF11-202ENST00000528336 ITPKCQ96DU7 683 aa11.42□□□□□ -0.58
PCF11-202ENST00000528336 ARID3AQ99856 593 aa11.42□□□□□ -0.58
PCF11-202ENST00000528336 ZFAND3Q9H8U3 227 aa11.42□□□□□ -0.58
PCF11-202ENST00000528336 ATP9BO43861 1147 aa11.41□□□□□ -0.58
PCF11-202ENST00000528336 CCDC125Q86Z20 511 aa11.41□□□□□ -0.58
PCF11-202ENST00000528336 ZNF784Q8NCA9 323 aaPredicted RBP11.41□□□□□ -0.58
PCF11-202ENST00000528336 NFATC2IPQ8NCF5 419 aa11.41□□□□□ -0.58
PCF11-202ENST00000528336 KLF16Q9BXK1 252 aaPredicted RBP11.41□□□□□ -0.58
PCF11-202ENST00000528336 SERPINA10Q9UK55 444 aa11.41□□□□□ -0.58
PCF11-202ENST00000528336 MYT1Q01538 1121 aa11.4□□□□□ -0.58
PCF11-202ENST00000528336 MAP7D1Q3KQU3 841 aa11.4□□□□□ -0.58
PCF11-202ENST00000528336 ESF1Q9H501 851 aaKnown RBP11.4□□□□□ -0.58
PCF11-202ENST00000528336 CHIC2Q9UKJ5 165 aa11.4□□□□□ -0.58
PCF11-202ENST00000528336 USP17L5A8MUK1 530 aa11.39□□□□□ -0.59
PCF11-202ENST00000528336 CAPN5O15484 640 aaPredicted RBP11.39□□□□□ -0.59
PCF11-202ENST00000528336 TIMP2P16035 220 aa11.39□□□□□ -0.59
PCF11-202ENST00000528336 RFX1P22670 979 aa11.39□□□□□ -0.59
PCF11-202ENST00000528336 SCTRP47872 440 aa11.39□□□□□ -0.59
PCF11-202ENST00000528336 TRAF7Q6Q0C0 670 aa11.39□□□□□ -0.59
PCF11-202ENST00000528336 LMOD1P29536 600 aaPredicted RBP11.38□□□□□ -0.59
PCF11-202ENST00000528336 CBLBQ13191 982 aa11.38□□□□□ -0.59
PCF11-202ENST00000528336 LILRA1O75019 489 aa11.37□□□□□ -0.59
PCF11-202ENST00000528336 AVPP01185 164 aa11.37□□□□□ -0.59
PCF11-202ENST00000528336 NCOA4Q13772 614 aa11.37□□□□□ -0.59
PCF11-202ENST00000528336 MAFBQ9Y5Q3 323 aaPredicted RBP11.37□□□□□ -0.59
PCF11-202ENST00000528336 USP17L3A6NCW0 530 aa11.36□□□□□ -0.59
PCF11-202ENST00000528336 USP17L4A6NCW7 530 aa11.36□□□□□ -0.59
PCF11-202ENST00000528336 MYCP01106 439 aaPredicted RBP11.36□□□□□ -0.59
PCF11-202ENST00000528336 ADD1P35611 737 aaKnown RBP11.36□□□□□ -0.59
PCF11-202ENST00000528336 USP4Q13107 963 aa11.36□□□□□ -0.59
PCF11-202ENST00000528336 CC2D2BQ6DHV5 1058 aa11.36□□□□□ -0.59
PCF11-202ENST00000528336 USP17L2Q6R6M4 530 aa11.36□□□□□ -0.59
PCF11-202ENST00000528336 USP17L1Q7RTZ2 530 aa11.36□□□□□ -0.59
PCF11-202ENST00000528336 ERVK-9P63128 1117 aa11.35□□□□□ -0.59
PCF11-202ENST00000528336 EML3Q32P44 896 aa11.35□□□□□ -0.59
PCF11-202ENST00000528336 CFAP70Q5T0N1 1121 aa11.35□□□□□ -0.59
PCF11-202ENST00000528336 Q6ZNB5 142 aa11.35□□□□□ -0.59
PCF11-202ENST00000528336 TRIM52Q96A61 297 aa11.35□□□□□ -0.59
PCF11-202ENST00000528336 AXIN1O15169 862 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms