RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 PZPP20742 1482 aa7.56□□□□□ -1.2
CD44-218ENST00000525469 MIA2Q96PC5 1412 aa7.56□□□□□ -1.2
CD44-218ENST00000525469 CENPBP07199 599 aaPredicted RBP7.56□□□□□ -1.2
CD44-218ENST00000525469 MAP2K5Q13163 448 aa7.56□□□□□ -1.2
CD44-218ENST00000525469 KMT5BQ4FZB7 885 aa7.56□□□□□ -1.2
CD44-218ENST00000525469 LRRIQ1Q96JM4 1722 aa7.55□□□□□ -1.2
CD44-218ENST00000525469 INO80Q9ULG1 1556 aaPredicted RBP7.55□□□□□ -1.2
CD44-218ENST00000525469 KIF3BO15066 747 aa7.55□□□□□ -1.2
CD44-218ENST00000525469 KDM5DQ9BY66 1539 aa7.55□□□□□ -1.2
CD44-218ENST00000525469 LRRC9Q6ZRR7 1453 aa7.55□□□□□ -1.2
CD44-218ENST00000525469 PLEKHH2Q8IVE3 1493 aa7.55□□□□□ -1.2
CD44-218ENST00000525469 ZC3H13Q5T200 1668 aaKnown RBP7.54□□□□□ -1.2
CD44-218ENST00000525469 FAM161AQ3B820 660 aa7.54□□□□□ -1.2
CD44-218ENST00000525469 LMOD2Q6P5Q4 547 aa7.54□□□□□ -1.2
CD44-218ENST00000525469 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.54□□□□□ -1.2
CD44-218ENST00000525469 SULF1Q8IWU6 871 aa7.54□□□□□ -1.2
CD44-218ENST00000525469 SPATA31A6Q5VVP1 1343 aa7.53□□□□□ -1.2
CD44-218ENST00000525469 NUTM2BA6NNL0 878 aaPredicted RBP7.53□□□□□ -1.2
CD44-218ENST00000525469 NUTM2EB1AL46 878 aaPredicted RBP7.53□□□□□ -1.2
CD44-218ENST00000525469 RGS20O76081 388 aa7.53□□□□□ -1.2
CD44-218ENST00000525469 NUTM2DQ5VT03 806 aaPredicted RBP7.53□□□□□ -1.2
CD44-218ENST00000525469 PROSER2Q86WR7 435 aaPredicted RBP7.53□□□□□ -1.2
CD44-218ENST00000525469 NUTM2AQ8IVF1 878 aaPredicted RBP7.53□□□□□ -1.2
CD44-218ENST00000525469 IL21Q9HBE4 155 aa7.53□□□□□ -1.2
CD44-218ENST00000525469 CFDP1Q9UEE9 299 aaPredicted RBP7.53□□□□□ -1.2
CD44-218ENST00000525469 EID1Q9Y6B2 187 aa7.53□□□□□ -1.2
CD44-218ENST00000525469 MINK1Q8N4C8 1332 aaPredicted RBP7.52□□□□□ -1.2
CD44-218ENST00000525469 SCAF11Q99590 1463 aaKnown RBP7.52□□□□□ -1.21
CD44-218ENST00000525469 CDK12Q9NYV4 1490 aaPredicted RBP7.52□□□□□ -1.21
CD44-218ENST00000525469 UBTFP17480 764 aaKnown RBP7.52□□□□□ -1.21
CD44-218ENST00000525469 TXNDC2Q86VQ3 553 aa7.52□□□□□ -1.21
CD44-218ENST00000525469 EEA1Q15075 1411 aa7.52□□□□□ -1.21
CD44-218ENST00000525469 KIAA1107Q9UPP5 1409 aa7.52□□□□□ -1.21
CD44-218ENST00000525469 CCDC18Q5T9S5 1454 aa7.51□□□□□ -1.21
CD44-218ENST00000525469 SRCAPQ6ZRS2 3230 aa7.51□□□□□ -1.21
CD44-218ENST00000525469 TMEM94Q12767 1356 aa7.51□□□□□ -1.21
CD44-218ENST00000525469 DHX29Q7Z478 1369 aaKnown RBP7.51□□□□□ -1.21
CD44-218ENST00000525469 A0A0G2JS52 829 aa7.51□□□□□ -1.21
CD44-218ENST00000525469 FECHP22830 423 aa7.51□□□□□ -1.21
CD44-218ENST00000525469 APLP1P51693 650 aa7.51□□□□□ -1.21
CD44-218ENST00000525469 MTRQ99707 1265 aa7.51□□□□□ -1.21
CD44-218ENST00000525469 SLAIN2Q9P270 581 aa7.51□□□□□ -1.21
CD44-218ENST00000525469 MSH6P52701 1360 aa7.5□□□□□ -1.21
CD44-218ENST00000525469 CFHP08603 1231 aa7.5□□□□□ -1.21
CD44-218ENST00000525469 PCDHB3Q9Y5E6 796 aa7.5□□□□□ -1.21
CD44-218ENST00000525469 UBR1Q8IWV7 1749 aa7.49□□□□□ -1.21
CD44-218ENST00000525469 KCNA6P17658 529 aa7.49□□□□□ -1.21
CD44-218ENST00000525469 RDH13Q8NBN7 331 aa7.49□□□□□ -1.21
CD44-218ENST00000525469 FGD6Q6ZV73 1430 aa7.49□□□□□ -1.21
CD44-218ENST00000525469 CCNB3Q8WWL7 1395 aa7.48□□□□□ -1.21
CD44-218ENST00000525469 GPATCH8Q9UKJ3 1502 aaKnown RBP7.48□□□□□ -1.21
CD44-218ENST00000525469 IRF6O14896 467 aa7.48□□□□□ -1.21
CD44-218ENST00000525469 KRI1Q8N9T8 703 aaKnown RBP7.48□□□□□ -1.21
CD44-218ENST00000525469 LRP6O75581 1613 aa7.48□□□□□ -1.21
CD44-218ENST00000525469 ARHGAP35Q9NRY4 1499 aa7.48□□□□□ -1.21
CD44-218ENST00000525469 AFF2P51816 1311 aa7.48□□□□□ -1.21
CD44-218ENST00000525469 SHPRHQ149N8 1683 aa7.47□□□□□ -1.21
CD44-218ENST00000525469 ATAD2Q6PL18 1390 aa7.47□□□□□ -1.21
CD44-218ENST00000525469 RTEL1-TNFRSF6BF6WH68 1400 aa7.47□□□□□ -1.21
CD44-218ENST00000525469 ACTN4O43707 911 aaKnown RBP7.47□□□□□ -1.21
CD44-218ENST00000525469 LTKP29376 864 aa7.47□□□□□ -1.21
CD44-218ENST00000525469 GGCXP38435 758 aa7.47□□□□□ -1.21
CD44-218ENST00000525469 RBM6P78332 1123 aaKnown RBP7.47□□□□□ -1.21
CD44-218ENST00000525469 TJAP1Q5JTD0 557 aa7.47□□□□□ -1.21
CD44-218ENST00000525469 NGLY1Q96IV0 654 aa7.47□□□□□ -1.21
CD44-218ENST00000525469 QTRT2Q9H974 415 aaKnown RBP7.47□□□□□ -1.21
CD44-218ENST00000525469 COL16A1Q07092 1604 aaPredicted RBP7.47□□□□□ -1.21
CD44-218ENST00000525469 DDX11L8A8MPP1 907 aa7.46□□□□□ -1.22
CD44-218ENST00000525469 NR1I2O75469 434 aa7.46□□□□□ -1.22
CD44-218ENST00000525469 C14orf37Q86TY3 774 aa7.46□□□□□ -1.22
CD44-218ENST00000525469 CCDC102AQ96A19 550 aa7.46□□□□□ -1.22
CD44-218ENST00000525469 SETBP1Q9Y6X0 1596 aa7.46□□□□□ -1.22
CD44-218ENST00000525469 COPS2P61201 443 aa7.45□□□□□ -1.22
CD44-218ENST00000525469 SLIT1O75093 1534 aa7.45□□□□□ -1.22
CD44-218ENST00000525469 PRDM15P57071 1507 aaPredicted RBP7.45□□□□□ -1.22
CD44-218ENST00000525469 MAP3K1Q13233 1512 aa7.45□□□□□ -1.22
CD44-218ENST00000525469 TIAM1Q13009 1591 aa7.45□□□□□ -1.22
CD44-218ENST00000525469 RGS12O14924 1447 aa7.44□□□□□ -1.22
CD44-218ENST00000525469 ERVK-7P63135 1459 aa7.44□□□□□ -1.22
CD44-218ENST00000525469 ABCC3O15438 1527 aa7.44□□□□□ -1.22
CD44-218ENST00000525469 CLCN1P35523 988 aa7.44□□□□□ -1.22
CD44-218ENST00000525469 GRIPAP1Q4V328 841 aa7.44□□□□□ -1.22
CD44-218ENST00000525469 CCDC125Q86Z20 511 aa7.44□□□□□ -1.22
CD44-218ENST00000525469 C8orf37Q96NL8 207 aa7.44□□□□□ -1.22
CD44-218ENST00000525469 SLC26A8Q96RN1 970 aa7.44□□□□□ -1.22
CD44-218ENST00000525469 CLSPNQ9HAW4 1339 aa7.44□□□□□ -1.22
CD44-218ENST00000525469 CASKIN1Q8WXD9 1431 aa7.44□□□□□ -1.22
CD44-218ENST00000525469 ARHGAP23Q9P227 1491 aa7.43□□□□□ -1.22
CD44-218ENST00000525469 ZPR1O75312 459 aa7.43□□□□□ -1.22
CD44-218ENST00000525469 SLC10A3P09131 477 aa7.43□□□□□ -1.22
CD44-218ENST00000525469 KDM5AP29375 1690 aaKnown RBP7.43□□□□□ -1.22
CD44-218ENST00000525469 CEP152O94986 1710 aa7.43□□□□□ -1.22
CD44-218ENST00000525469 NKTRP30414 1462 aaKnown RBP7.43□□□□□ -1.22
CD44-218ENST00000525469 ZMYND10O75800 440 aa7.42□□□□□ -1.22
CD44-218ENST00000525469 TSPY4P0CV99 314 aa7.42□□□□□ -1.22
CD44-218ENST00000525469 TSPY10P0CW01 314 aa7.42□□□□□ -1.22
CD44-218ENST00000525469 ATF3P18847 181 aa7.42□□□□□ -1.22
CD44-218ENST00000525469 BLOC1S3Q6QNY0 202 aa7.42□□□□□ -1.22
CD44-218ENST00000525469 BARGINQ6ZT62 677 aa7.42□□□□□ -1.22
CD44-218ENST00000525469 ZC3H15Q8WU90 426 aaKnown RBP7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms