RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 RNF214Q8ND24 703 aa16.66■□□□□ 0.26
SYNPO-205ENST00000522122 NOC3LQ8WTT2 800 aaKnown RBP16.66■□□□□ 0.26
SYNPO-205ENST00000522122 CWC22Q9HCG8 908 aaKnown RBP16.66■□□□□ 0.26
SYNPO-205ENST00000522122 TRDNQ13061 729 aa16.65■□□□□ 0.26
SYNPO-205ENST00000522122 CNTROBQ8N137 903 aa16.65■□□□□ 0.26
SYNPO-205ENST00000522122 PRDM15P57071 1507 aaPredicted RBP16.65■□□□□ 0.26
SYNPO-205ENST00000522122 PES1O00541 588 aaKnown RBP16.65■□□□□ 0.26
SYNPO-205ENST00000522122 CABP1Q9NZU7 370 aa16.65■□□□□ 0.26
SYNPO-205ENST00000522122 HDAC1Q13547 482 aaPredicted RBP16.65■□□□□ 0.26
SYNPO-205ENST00000522122 IL16Q14005 1332 aa16.64■□□□□ 0.26
SYNPO-205ENST00000522122 APPP05067 770 aa16.64■□□□□ 0.26
SYNPO-205ENST00000522122 CCDC39Q9UFE4 941 aa16.64■□□□□ 0.26
SYNPO-205ENST00000522122 TRIM27P14373 513 aa16.64■□□□□ 0.25
SYNPO-205ENST00000522122 TSR1Q2NL82 804 aaKnown RBP16.64■□□□□ 0.25
SYNPO-205ENST00000522122 SYNMO15061 1565 aa16.64■□□□□ 0.25
SYNPO-205ENST00000522122 ABCC2Q92887 1545 aa16.64■□□□□ 0.25
SYNPO-205ENST00000522122 RIC3Q7Z5B4 369 aa16.64■□□□□ 0.25
SYNPO-205ENST00000522122 PRPF40AO75400 957 aaKnown RBP16.64■□□□□ 0.25
SYNPO-205ENST00000522122 CCDC73Q6ZRK6 1079 aa16.64■□□□□ 0.25
SYNPO-205ENST00000522122 RAPGEF4Q8WZA2 1011 aa16.64■□□□□ 0.25
SYNPO-205ENST00000522122 TPM1P09493 284 aa16.63■□□□□ 0.25
SYNPO-205ENST00000522122 ABCA8O94911 1581 aa16.63■□□□□ 0.25
SYNPO-205ENST00000522122 CCAR2Q8N163 923 aaKnown RBP16.63■□□□□ 0.25
SYNPO-205ENST00000522122 CDK19Q9BWU1 502 aa16.63■□□□□ 0.25
SYNPO-205ENST00000522122 C14orf93Q9H972 538 aaKnown RBP16.63■□□□□ 0.25
SYNPO-205ENST00000522122 FANCAO15360 1455 aa16.63■□□□□ 0.25
SYNPO-205ENST00000522122 KDM5AP29375 1690 aaKnown RBP16.63■□□□□ 0.25
SYNPO-205ENST00000522122 GNAI2P04899 355 aa16.63■□□□□ 0.25
SYNPO-205ENST00000522122 TMX4Q9H1E5 349 aaPredicted RBP16.63■□□□□ 0.25
SYNPO-205ENST00000522122 SLC52A1Q9NWF4 448 aa16.63■□□□□ 0.25
SYNPO-205ENST00000522122 PCDHB15Q9Y5E8 787 aa16.63■□□□□ 0.25
SYNPO-205ENST00000522122 AIMP1Q12904 312 aaKnown RBP16.63■□□□□ 0.25
SYNPO-205ENST00000522122 ANKRD36BQ8N2N9 1353 aa16.62■□□□□ 0.25
SYNPO-205ENST00000522122 SLC4A2P04920 1241 aa16.62■□□□□ 0.25
SYNPO-205ENST00000522122 NUTM2GQ5VZR2 741 aa16.62■□□□□ 0.25
SYNPO-205ENST00000522122 PSMA5P28066 241 aa16.62■□□□□ 0.25
SYNPO-205ENST00000522122 SULT6B1Q6IMI4 303 aa16.62■□□□□ 0.25
SYNPO-205ENST00000522122 RTEL1-TNFRSF6BF6WH68 1400 aa16.62■□□□□ 0.25
SYNPO-205ENST00000522122 ESPNB1AK53 854 aa16.61■□□□□ 0.25
SYNPO-205ENST00000522122 EVA1CP58658 441 aa16.61■□□□□ 0.25
SYNPO-205ENST00000522122 NFE2L2Q16236 605 aa16.61■□□□□ 0.25
SYNPO-205ENST00000522122 TRAPPC8Q9Y2L5 1435 aa16.61■□□□□ 0.25
SYNPO-205ENST00000522122 MARCH6O60337 910 aa16.61■□□□□ 0.25
SYNPO-205ENST00000522122 PRKCSHP14314 528 aaPredicted RBP16.61■□□□□ 0.25
SYNPO-205ENST00000522122 R3HCC1Q9Y3T6 440 aaKnown RBP16.61■□□□□ 0.25
SYNPO-205ENST00000522122 SAMD9LQ8IVG5 1584 aa16.6■□□□□ 0.25
SYNPO-205ENST00000522122 NEUROD6Q96NK8 337 aa16.6■□□□□ 0.25
SYNPO-205ENST00000522122 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.6■□□□□ 0.25
SYNPO-205ENST00000522122 HOMER1Q86YM7 354 aa16.6■□□□□ 0.25
SYNPO-205ENST00000522122 ZNF692Q9BU19 519 aaPredicted RBP16.59■□□□□ 0.25
SYNPO-205ENST00000522122 SPINK5Q9NQ38 1064 aaPredicted RBP16.59■□□□□ 0.25
SYNPO-205ENST00000522122 FSD1Q9BTV5 496 aa16.59■□□□□ 0.25
SYNPO-205ENST00000522122 IFT57Q9NWB7 429 aa16.59■□□□□ 0.25
SYNPO-205ENST00000522122 TRPM1Q7Z4N2 1603 aa16.59■□□□□ 0.25
SYNPO-205ENST00000522122 CCT4P50991 539 aaKnown RBP16.59■□□□□ 0.25
SYNPO-205ENST00000522122 TXNDC2Q86VQ3 553 aa16.58■□□□□ 0.25
SYNPO-205ENST00000522122 TNPO1Q92973 898 aaKnown RBP16.58■□□□□ 0.25
SYNPO-205ENST00000522122 HOOK1Q9UJC3 728 aaKnown RBP16.58■□□□□ 0.25
SYNPO-205ENST00000522122 PDCP20941 246 aa16.58■□□□□ 0.24
SYNPO-205ENST00000522122 AEBP2Q6ZN18 517 aaPredicted RBP16.58■□□□□ 0.24
SYNPO-205ENST00000522122 LETM1O95202 739 aaPredicted RBP16.58■□□□□ 0.24
SYNPO-205ENST00000522122 BMP2KLQ5H9B9 411 aa16.58■□□□□ 0.24
SYNPO-205ENST00000522122 RALYLQ86SE5 291 aaKnown RBP16.58■□□□□ 0.24
SYNPO-205ENST00000522122 MAGI2Q86UL8 1455 aa16.57■□□□□ 0.24
SYNPO-205ENST00000522122 PREX2Q70Z35 1606 aa16.57■□□□□ 0.24
SYNPO-205ENST00000522122 A0A0U1RQG5 324 aaPredicted RBP16.57■□□□□ 0.24
SYNPO-205ENST00000522122 FOSBP53539 338 aa16.57■□□□□ 0.24
SYNPO-205ENST00000522122 NUCB1Q02818 461 aa16.57■□□□□ 0.24
SYNPO-205ENST00000522122 MAP7D2Q96T17 732 aa16.57■□□□□ 0.24
SYNPO-205ENST00000522122 CARD14Q9BXL6 1004 aa16.57■□□□□ 0.24
SYNPO-205ENST00000522122 NLRP2Q9NX02 1062 aa16.57■□□□□ 0.24
SYNPO-205ENST00000522122 ZMYM3Q14202 1370 aa16.57■□□□□ 0.24
SYNPO-205ENST00000522122 NFXL1Q6ZNB6 911 aa16.56■□□□□ 0.24
SYNPO-205ENST00000522122 ABTB2Q8N961 1025 aa16.56■□□□□ 0.24
SYNPO-205ENST00000522122 HDGFL1Q5TGJ6 251 aa16.56■□□□□ 0.24
SYNPO-205ENST00000522122 SDF4Q9BRK5 362 aa16.56■□□□□ 0.24
SYNPO-205ENST00000522122 LRRCC1Q9C099 1032 aa16.56■□□□□ 0.24
SYNPO-205ENST00000522122 TSPY26PQ9H489 355 aa16.56■□□□□ 0.24
SYNPO-205ENST00000522122 GPS2Q13227 327 aa16.56■□□□□ 0.24
SYNPO-205ENST00000522122 G3V3G9 751 aa16.55■□□□□ 0.24
SYNPO-205ENST00000522122 RRP9O43818 475 aaKnown RBP16.55■□□□□ 0.24
SYNPO-205ENST00000522122 SEC24BO95487 1268 aa16.55■□□□□ 0.24
SYNPO-205ENST00000522122 DCAF8Q5TAQ9 597 aa16.55■□□□□ 0.24
SYNPO-205ENST00000522122 ANKRD20A12PQ8NF67 263 aa16.55■□□□□ 0.24
SYNPO-205ENST00000522122 WASHC4Q2M389 1173 aa16.55■□□□□ 0.24
SYNPO-205ENST00000522122 FBXW7Q969H0 707 aa16.55■□□□□ 0.24
SYNPO-205ENST00000522122 HIP1O00291 1037 aa16.55■□□□□ 0.24
SYNPO-205ENST00000522122 RLBP1P12271 317 aa16.55■□□□□ 0.24
SYNPO-205ENST00000522122 RPAP2Q8IXW5 612 aaPredicted RBP16.54■□□□□ 0.24
SYNPO-205ENST00000522122 FIBPO43427 364 aa16.54■□□□□ 0.24
SYNPO-205ENST00000522122 IPO7O95373 1038 aaKnown RBP16.54■□□□□ 0.24
SYNPO-205ENST00000522122 SAFBQ15424 915 aaKnown RBP eCLIP16.54■□□□□ 0.24
SYNPO-205ENST00000522122 SNX21Q969T3 373 aa16.54■□□□□ 0.24
SYNPO-205ENST00000522122 CDC42BPAQ5VT25 1732 aa16.54■□□□□ 0.24
SYNPO-205ENST00000522122 MTERF4Q7Z6M4 381 aaKnown RBP16.54■□□□□ 0.24
SYNPO-205ENST00000522122 PUS7Q96PZ0 661 aaKnown RBP16.54■□□□□ 0.24
SYNPO-205ENST00000522122 MYO5CQ9NQX4 1742 aa16.53■□□□□ 0.24
SYNPO-205ENST00000522122 PLEKHO1Q53GL0 409 aaPredicted RBP16.53■□□□□ 0.24
SYNPO-205ENST00000522122 ZNF771Q7L3S4 317 aaPredicted RBP16.53■□□□□ 0.24
SYNPO-205ENST00000522122 ERC1Q8IUD2 1116 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms