RNA–Protein interactions for RNA: ENST00000521646.1

CSMD1-210, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 5

Gene CSMD1, Length 1,003 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-210ENST00000521646 PSME1Q06323 249 aa16.42■□□□□ 0.22
CSMD1-210ENST00000521646 PDAP1Q13442 181 aaKnown RBP16.42■□□□□ 0.22
CSMD1-210ENST00000521646 ACIN1Q9UKV3 1341 aaKnown RBP16.42■□□□□ 0.22
CSMD1-210ENST00000521646 THSD7AQ9UPZ6 1657 aa16.41■□□□□ 0.22
CSMD1-210ENST00000521646 IER5LQ5T953 404 aa16.41■□□□□ 0.22
CSMD1-210ENST00000521646 KDM2AQ9Y2K7 1162 aa16.41■□□□□ 0.22
CSMD1-210ENST00000521646 ATP7BP35670 1465 aa16.41■□□□□ 0.22
CSMD1-210ENST00000521646 GOLGA2Q08379 1002 aa16.4■□□□□ 0.22
CSMD1-210ENST00000521646 POGKQ9P215 609 aa16.4■□□□□ 0.22
CSMD1-210ENST00000521646 COL14A1Q05707 1796 aaKnown RBP16.4■□□□□ 0.22
CSMD1-210ENST00000521646 FAM98CQ17RN3 349 aaKnown RBP16.39■□□□□ 0.21
CSMD1-210ENST00000521646 KRT27Q7Z3Y8 459 aa16.39■□□□□ 0.21
CSMD1-210ENST00000521646 BTG4Q9NY30 223 aa16.39■□□□□ 0.21
CSMD1-210ENST00000521646 WASLO00401 505 aaPredicted RBP16.38■□□□□ 0.21
CSMD1-210ENST00000521646 HAP1P54257 671 aaPredicted RBP16.38■□□□□ 0.21
CSMD1-210ENST00000521646 DCAF11Q8TEB1 546 aa16.38■□□□□ 0.21
CSMD1-210ENST00000521646 CCDC9Q9Y3X0 531 aaKnown RBP16.38■□□□□ 0.21
CSMD1-210ENST00000521646 TNS1Q9HBL0 1735 aaKnown RBP16.38■□□□□ 0.21
CSMD1-210ENST00000521646 PHRF1Q9P1Y6 1649 aaKnown RBP16.37■□□□□ 0.21
CSMD1-210ENST00000521646 TOPAZ1Q8N9V7 1692 aa16.37■□□□□ 0.21
CSMD1-210ENST00000521646 POTEFA5A3E0 1075 aa16.37■□□□□ 0.21
CSMD1-210ENST00000521646 COLQQ9Y215 455 aaPredicted RBP16.37■□□□□ 0.21
CSMD1-210ENST00000521646 LRP5O75197 1615 aa16.36■□□□□ 0.21
CSMD1-210ENST00000521646 SPATA31A5Q5VU36 1347 aa16.36■□□□□ 0.21
CSMD1-210ENST00000521646 SPATA31A7Q8IWB4 1347 aa16.36■□□□□ 0.21
CSMD1-210ENST00000521646 PSDA5PKW4 1024 aaPredicted RBP16.35■□□□□ 0.21
CSMD1-210ENST00000521646 CHRNA2Q15822 529 aa16.33■□□□□ 0.2
CSMD1-210ENST00000521646 KIAA0232Q92628 1395 aa16.33■□□□□ 0.2
CSMD1-210ENST00000521646 ECM2O94769 699 aaPredicted RBP16.32■□□□□ 0.2
CSMD1-210ENST00000521646 PLCG2P16885 1265 aa16.32■□□□□ 0.2
CSMD1-210ENST00000521646 MKRN3Q13064 507 aaKnown RBP16.32■□□□□ 0.2
CSMD1-210ENST00000521646 GPRASP1Q5JY77 1395 aa16.32■□□□□ 0.2
CSMD1-210ENST00000521646 NUTM2GQ5VZR2 741 aa16.32■□□□□ 0.2
CSMD1-210ENST00000521646 NRKQ7Z2Y5 1582 aa16.31■□□□□ 0.2
CSMD1-210ENST00000521646 RIOK3O14730 519 aaKnown RBP16.31■□□□□ 0.2
CSMD1-210ENST00000521646 EN1Q05925 392 aaPredicted RBP16.31■□□□□ 0.2
CSMD1-210ENST00000521646 NUDT16Q96DE0 195 aaKnown RBP16.31■□□□□ 0.2
CSMD1-210ENST00000521646 RGPD1P0DJD0 1748 aa16.31■□□□□ 0.2
CSMD1-210ENST00000521646 ITSN1Q15811 1721 aa16.31■□□□□ 0.2
CSMD1-210ENST00000521646 LMO7Q8WWI1 1683 aa16.3■□□□□ 0.2
CSMD1-210ENST00000521646 SPATA31A1Q5TZJ5 1347 aa16.29■□□□□ 0.2
CSMD1-210ENST00000521646 A0A0G2JS52 829 aa16.29■□□□□ 0.2
CSMD1-210ENST00000521646 HRCP23327 699 aa16.29■□□□□ 0.2
CSMD1-210ENST00000521646 MYT1Q01538 1121 aa16.29■□□□□ 0.2
CSMD1-210ENST00000521646 NBPF1Q3BBV0 1214 aa16.29■□□□□ 0.2
CSMD1-210ENST00000521646 NGDNQ8NEJ9 315 aaKnown RBP16.29■□□□□ 0.2
CSMD1-210ENST00000521646 OTUD5Q96G74 571 aa16.29■□□□□ 0.2
CSMD1-210ENST00000521646 CAMTA1Q9Y6Y1 1673 aa16.29■□□□□ 0.2
CSMD1-210ENST00000521646 POLR3AO14802 1390 aaPredicted RBP16.28■□□□□ 0.2
CSMD1-210ENST00000521646 CDK19Q9BWU1 502 aa16.28■□□□□ 0.2
CSMD1-210ENST00000521646 PRDM11Q9NQV5 511 aa16.28■□□□□ 0.2
CSMD1-210ENST00000521646 DISP2A7MBM2 1401 aa16.28■□□□□ 0.2
CSMD1-210ENST00000521646 POTEJP0CG39 1038 aa16.27■□□□□ 0.2
CSMD1-210ENST00000521646 ZC3H6P61129 1189 aaKnown RBP16.27■□□□□ 0.2
CSMD1-210ENST00000521646 MAMSTRQ6ZN01 415 aa16.27■□□□□ 0.2
CSMD1-210ENST00000521646 RNF25Q96BH1 459 aaPredicted RBP16.27■□□□□ 0.2
CSMD1-210ENST00000521646 OCEL1Q9H607 264 aa16.27■□□□□ 0.2
CSMD1-210ENST00000521646 CABP2Q9NPB3 220 aa16.27■□□□□ 0.2
CSMD1-210ENST00000521646 EIF3AQ14152 1382 aaKnown RBP16.26■□□□□ 0.19
CSMD1-210ENST00000521646 ACEP12821 1306 aa16.26■□□□□ 0.19
CSMD1-210ENST00000521646 IRX5P78411 483 aaPredicted RBP16.26■□□□□ 0.19
CSMD1-210ENST00000521646 EZH2Q15910 746 aaKnown RBP16.26■□□□□ 0.19
CSMD1-210ENST00000521646 SF3B2Q13435 895 aaKnown RBP16.25■□□□□ 0.19
CSMD1-210ENST00000521646 BAG6P46379 1132 aa16.24■□□□□ 0.19
CSMD1-210ENST00000521646 NBPF8Q3BBV2 869 aa16.24■□□□□ 0.19
CSMD1-210ENST00000521646 CAMKK2Q96RR4 588 aa16.24■□□□□ 0.19
CSMD1-210ENST00000521646 STRN4Q9NRL3 753 aa16.24■□□□□ 0.19
CSMD1-210ENST00000521646 SSH2Q76I76 1423 aa16.24■□□□□ 0.19
CSMD1-210ENST00000521646 KIAA1210Q9ULL0 1709 aa16.24■□□□□ 0.19
CSMD1-210ENST00000521646 R3HDM1Q15032 1099 aaKnown RBP16.23■□□□□ 0.19
CSMD1-210ENST00000521646 LARP1Q6PKG0 1096 aaKnown RBP16.23■□□□□ 0.19
CSMD1-210ENST00000521646 RREB1Q92766 1687 aa16.23■□□□□ 0.19
CSMD1-210ENST00000521646 USP19O94966 1318 aa16.22■□□□□ 0.19
CSMD1-210ENST00000521646 PLEKHG3A1L390 1219 aa16.22■□□□□ 0.19
CSMD1-210ENST00000521646 TRIM37O94972 964 aa16.22■□□□□ 0.19
CSMD1-210ENST00000521646 SCUBE2Q9NQ36 999 aa16.22■□□□□ 0.19
CSMD1-210ENST00000521646 USP35Q9P2H5 1018 aa16.22■□□□□ 0.19
CSMD1-210ENST00000521646 NUP188Q5SRE5 1749 aa16.22■□□□□ 0.19
CSMD1-210ENST00000521646 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.2■□□□□ 0.18
CSMD1-210ENST00000521646 TAOK2Q9UL54 1235 aa16.19■□□□□ 0.18
CSMD1-210ENST00000521646 PEAK1Q9H792 1746 aa16.19■□□□□ 0.18
CSMD1-210ENST00000521646 QRICH2Q9H0J4 1663 aa16.18■□□□□ 0.18
CSMD1-210ENST00000521646 COL5A2P05997 1499 aaPredicted RBP16.18■□□□□ 0.18
CSMD1-210ENST00000521646 CPDO75976 1380 aa16.18■□□□□ 0.18
CSMD1-210ENST00000521646 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.18■□□□□ 0.18
CSMD1-210ENST00000521646 ZFP91Q96JP5 570 aaPredicted RBP16.18■□□□□ 0.18
CSMD1-210ENST00000521646 PPIP5K1Q6PFW1 1433 aa16.18■□□□□ 0.18
CSMD1-210ENST00000521646 COL18A1P39060 1754 aa16.18■□□□□ 0.18
CSMD1-210ENST00000521646 PIK3C2AO00443 1686 aa16.18■□□□□ 0.18
CSMD1-210ENST00000521646 BARGINQ6ZT62 677 aa16.17■□□□□ 0.18
CSMD1-210ENST00000521646 PTF1AQ7RTS3 328 aa16.17■□□□□ 0.18
CSMD1-210ENST00000521646 STAC3Q96MF2 364 aa16.17■□□□□ 0.18
CSMD1-210ENST00000521646 PARP4Q9UKK3 1724 aaKnown RBP16.16■□□□□ 0.18
CSMD1-210ENST00000521646 ABTB2Q8N961 1025 aa16.16■□□□□ 0.18
CSMD1-210ENST00000521646 LRRC37A3O60309 1634 aa16.16■□□□□ 0.18
CSMD1-210ENST00000521646 SLIT3O75094 1523 aa16.15■□□□□ 0.18
CSMD1-210ENST00000521646 APBA3O96018 575 aa16.14■□□□□ 0.17
CSMD1-210ENST00000521646 GCP02774 474 aa16.14■□□□□ 0.17
CSMD1-210ENST00000521646 FAM196AQ6ZSG2 479 aa16.14■□□□□ 0.17
CSMD1-210ENST00000521646 USP6P35125 1406 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms