RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 ST18O60284 1047 aa12.25□□□□□ -0.45
PDGFRB-207ENST00000520579 LRSAM1Q6UWE0 723 aa12.25□□□□□ -0.45
PDGFRB-207ENST00000520579 ZNF710Q8N1W2 664 aa12.25□□□□□ -0.45
PDGFRB-207ENST00000520579 DDX54Q8TDD1 881 aaKnown RBP12.25□□□□□ -0.45
PDGFRB-207ENST00000520579 PLCD4Q9BRC7 762 aa12.25□□□□□ -0.45
PDGFRB-207ENST00000520579 BCL2L12Q9HB09 334 aa12.25□□□□□ -0.45
PDGFRB-207ENST00000520579 ARHGEF11O15085 1522 aa12.24□□□□□ -0.45
PDGFRB-207ENST00000520579 ZNF500O60304 480 aaPredicted RBP12.24□□□□□ -0.45
PDGFRB-207ENST00000520579 ADCY5O95622 1261 aa12.24□□□□□ -0.45
PDGFRB-207ENST00000520579 CHAF1AQ13111 956 aaPredicted RBP12.24□□□□□ -0.45
PDGFRB-207ENST00000520579 TAOK2Q9UL54 1235 aa12.24□□□□□ -0.45
PDGFRB-207ENST00000520579 SAMD9Q5K651 1589 aa12.24□□□□□ -0.45
PDGFRB-207ENST00000520579 A2MP01023 1474 aa12.24□□□□□ -0.45
PDGFRB-207ENST00000520579 RTEL1-TNFRSF6BF6WH68 1400 aa12.24□□□□□ -0.45
PDGFRB-207ENST00000520579 DDIT3P35638 169 aa12.24□□□□□ -0.45
PDGFRB-207ENST00000520579 RILPL2Q969X0 211 aa12.24□□□□□ -0.45
PDGFRB-207ENST00000520579 GPATCH8Q9UKJ3 1502 aaKnown RBP12.24□□□□□ -0.45
PDGFRB-207ENST00000520579 ZNF445P59923 1031 aa12.23□□□□□ -0.45
PDGFRB-207ENST00000520579 CABP2Q9NPB3 220 aa12.23□□□□□ -0.45
PDGFRB-207ENST00000520579 ZBTB40Q9NUA8 1239 aa12.23□□□□□ -0.45
PDGFRB-207ENST00000520579 MLECQ14165 292 aa12.23□□□□□ -0.45
PDGFRB-207ENST00000520579 HDAC1Q13547 482 aaPredicted RBP12.22□□□□□ -0.45
PDGFRB-207ENST00000520579 SLC4A10Q6U841 1118 aa12.22□□□□□ -0.45
PDGFRB-207ENST00000520579 GPATCH11Q8N954 259 aa12.22□□□□□ -0.45
PDGFRB-207ENST00000520579 FBXW7Q969H0 707 aa12.22□□□□□ -0.45
PDGFRB-207ENST00000520579 DNMT1P26358 1616 aaKnown RBP12.22□□□□□ -0.45
PDGFRB-207ENST00000520579 NSD3Q9BZ95 1437 aa12.22□□□□□ -0.45
PDGFRB-207ENST00000520579 LMOD3Q0VAK6 560 aa12.22□□□□□ -0.45
PDGFRB-207ENST00000520579 WDR63Q8IWG1 891 aa12.22□□□□□ -0.45
PDGFRB-207ENST00000520579 C16orf45Q96MC5 204 aaPredicted RBP12.22□□□□□ -0.45
PDGFRB-207ENST00000520579 RABEP1Q15276 862 aa12.22□□□□□ -0.45
PDGFRB-207ENST00000520579 BMP2KLQ5H9B9 411 aa12.22□□□□□ -0.45
PDGFRB-207ENST00000520579 TSPYL6Q8N831 410 aa12.22□□□□□ -0.45
PDGFRB-207ENST00000520579 RIOK3O14730 519 aaKnown RBP12.21□□□□□ -0.45
PDGFRB-207ENST00000520579 GSPT1P15170 499 aaKnown RBP12.21□□□□□ -0.45
PDGFRB-207ENST00000520579 AXDND1Q5T1B0 1012 aaPredicted RBP12.21□□□□□ -0.45
PDGFRB-207ENST00000520579 GIMAP6Q6P9H5 292 aa12.21□□□□□ -0.45
PDGFRB-207ENST00000520579 TMX1Q9H3N1 280 aa12.21□□□□□ -0.45
PDGFRB-207ENST00000520579 ANO2Q9NQ90 1003 aa12.21□□□□□ -0.45
PDGFRB-207ENST00000520579 WDR62O43379 1518 aa12.21□□□□□ -0.45
PDGFRB-207ENST00000520579 TMPOP42166 694 aaKnown RBP12.21□□□□□ -0.45
PDGFRB-207ENST00000520579 TROQ12816 1431 aaPredicted RBP12.21□□□□□ -0.46
PDGFRB-207ENST00000520579 MAP4K4O95819 1239 aaPredicted RBP12.21□□□□□ -0.46
PDGFRB-207ENST00000520579 SRPK2P78362 688 aaKnown RBP12.21□□□□□ -0.46
PDGFRB-207ENST00000520579 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.21□□□□□ -0.46
PDGFRB-207ENST00000520579 MYRIPQ8NFW9 859 aa12.21□□□□□ -0.46
PDGFRB-207ENST00000520579 IFT57Q9NWB7 429 aa12.21□□□□□ -0.46
PDGFRB-207ENST00000520579 WDR7Q9Y4E6 1490 aa12.2□□□□□ -0.46
PDGFRB-207ENST00000520579 DCTN1Q14203 1278 aa12.2□□□□□ -0.46
PDGFRB-207ENST00000520579 ZDHHC9Q9Y397 364 aa12.2□□□□□ -0.46
PDGFRB-207ENST00000520579 NUP153P49790 1475 aaKnown RBP12.2□□□□□ -0.46
PDGFRB-207ENST00000520579 CCDC66A2RUB6 948 aa12.19□□□□□ -0.46
PDGFRB-207ENST00000520579 CASC1Q6TDU7 716 aa12.19□□□□□ -0.46
PDGFRB-207ENST00000520579 ADGRF5Q8IZF2 1346 aa12.19□□□□□ -0.46
PDGFRB-207ENST00000520579 ZNF428Q96B54 188 aa12.19□□□□□ -0.46
PDGFRB-207ENST00000520579 PYCARDQ9ULZ3 195 aa12.19□□□□□ -0.46
PDGFRB-207ENST00000520579 CAMK4Q16566 473 aa12.19□□□□□ -0.46
PDGFRB-207ENST00000520579 ASXL1Q8IXJ9 1541 aa12.19□□□□□ -0.46
PDGFRB-207ENST00000520579 NINLQ9Y2I6 1382 aa12.19□□□□□ -0.46
PDGFRB-207ENST00000520579 NECTIN2Q92692 538 aa12.18□□□□□ -0.46
PDGFRB-207ENST00000520579 TIGD1Q96MW7 591 aa12.18□□□□□ -0.46
PDGFRB-207ENST00000520579 SYTL4Q96C24 671 aaPredicted RBP12.17□□□□□ -0.46
PDGFRB-207ENST00000520579 PDLIM2Q96JY6 352 aa12.17□□□□□ -0.46
PDGFRB-207ENST00000520579 GRIN2AQ12879 1464 aa12.17□□□□□ -0.46
PDGFRB-207ENST00000520579 SDSP20132 328 aa12.17□□□□□ -0.46
PDGFRB-207ENST00000520579 KRT24Q2M2I5 525 aa12.17□□□□□ -0.46
PDGFRB-207ENST00000520579 USP48Q86UV5 1035 aa12.17□□□□□ -0.46
PDGFRB-207ENST00000520579 TMX3Q96JJ7 454 aa12.17□□□□□ -0.46
PDGFRB-207ENST00000520579 CNPY2Q9Y2B0 182 aa12.17□□□□□ -0.46
PDGFRB-207ENST00000520579 CARMIL2Q6F5E8 1435 aa12.17□□□□□ -0.46
PDGFRB-207ENST00000520579 RTF1Q92541 710 aaKnown RBP12.16□□□□□ -0.46
PDGFRB-207ENST00000520579 TOMM22Q9NS69 142 aa12.16□□□□□ -0.46
PDGFRB-207ENST00000520579 INTS3Q68E01 1043 aaKnown RBP12.16□□□□□ -0.46
PDGFRB-207ENST00000520579 SIRT2Q8IXJ6 389 aa12.16□□□□□ -0.46
PDGFRB-207ENST00000520579 SYAP1Q96A49 352 aaPredicted RBP12.16□□□□□ -0.46
PDGFRB-207ENST00000520579 EIF4G3O43432 1585 aaKnown RBP12.16□□□□□ -0.46
PDGFRB-207ENST00000520579 KIF3BO15066 747 aa12.16□□□□□ -0.46
PDGFRB-207ENST00000520579 TICAM2Q86XR7 235 aa12.16□□□□□ -0.46
PDGFRB-207ENST00000520579 OSCARQ8IYS5 282 aa12.16□□□□□ -0.46
PDGFRB-207ENST00000520579 PRKAR2BP31323 418 aa12.15□□□□□ -0.46
PDGFRB-207ENST00000520579 TRHP20396 242 aaPredicted RBP12.15□□□□□ -0.46
PDGFRB-207ENST00000520579 LRMPQ12912 555 aa12.15□□□□□ -0.46
PDGFRB-207ENST00000520579 PLEKHM2Q8IWE5 1019 aa12.15□□□□□ -0.46
PDGFRB-207ENST00000520579 USP26Q9BXU7 913 aa12.15□□□□□ -0.46
PDGFRB-207ENST00000520579 PIK3C2GO75747 1445 aa12.15□□□□□ -0.46
PDGFRB-207ENST00000520579 FAM83GA6ND36 823 aa12.15□□□□□ -0.46
PDGFRB-207ENST00000520579 PTGS1P23219 599 aa12.15□□□□□ -0.46
PDGFRB-207ENST00000520579 HMGN5P82970 282 aaKnown RBP12.15□□□□□ -0.46
PDGFRB-207ENST00000520579 FERMT3Q86UX7 667 aa12.15□□□□□ -0.46
PDGFRB-207ENST00000520579 AFAP1Q8N556 730 aa12.15□□□□□ -0.46
PDGFRB-207ENST00000520579 TRIM35Q9UPQ4 493 aa12.14□□□□□ -0.47
PDGFRB-207ENST00000520579 EXOC6BQ9Y2D4 811 aa12.14□□□□□ -0.47
PDGFRB-207ENST00000520579 PTPRGP23470 1445 aa12.14□□□□□ -0.47
PDGFRB-207ENST00000520579 ADAMTS12P58397 1594 aa12.14□□□□□ -0.47
PDGFRB-207ENST00000520579 FAM135AQ9P2D6 1515 aa12.14□□□□□ -0.47
PDGFRB-207ENST00000520579 SYNJ2O15056 1496 aa12.14□□□□□ -0.47
PDGFRB-207ENST00000520579 VPS37CA5D8V6 355 aaPredicted RBP12.14□□□□□ -0.47
PDGFRB-207ENST00000520579 NPM1P06748 294 aaKnown RBP eCLIP12.14□□□□□ -0.47
PDGFRB-207ENST00000520579 GTF2A1P52655 376 aaPredicted RBP12.14□□□□□ -0.47
PDGFRB-207ENST00000520579 TERF1P54274 439 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms