RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 CGNL1Q0VF96 1302 aa10.63□□□□□ -0.71
LIMCH1-222ENST00000515847 KIF7Q2M1P5 1343 aa10.63□□□□□ -0.71
LIMCH1-222ENST00000515847 ZNF772Q68DY9 489 aaPredicted RBP10.63□□□□□ -0.71
LIMCH1-222ENST00000515847 ZRANB1Q9UGI0 708 aa10.63□□□□□ -0.71
LIMCH1-222ENST00000515847 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-222ENST00000515847 NWD2Q9ULI1 1742 aa10.63□□□□□ -0.71
LIMCH1-222ENST00000515847 KIAA0232Q92628 1395 aa10.63□□□□□ -0.71
LIMCH1-222ENST00000515847 KIF20BQ96Q89 1820 aa10.63□□□□□ -0.71
LIMCH1-222ENST00000515847 BCL9LQ86UU0 1499 aa10.62□□□□□ -0.71
LIMCH1-222ENST00000515847 NRAPQ86VF7 1730 aa10.62□□□□□ -0.71
LIMCH1-222ENST00000515847 OVOS2A0A0J9YW53 1432 aa10.62□□□□□ -0.71
LIMCH1-222ENST00000515847 OVOS2Q6IE36 1432 aa10.62□□□□□ -0.71
LIMCH1-222ENST00000515847 NSD3Q9BZ95 1437 aa10.62□□□□□ -0.71
LIMCH1-222ENST00000515847 FNBP4Q8N3X1 1017 aaPredicted RBP10.62□□□□□ -0.71
LIMCH1-222ENST00000515847 KCNH5Q8NCM2 988 aa10.62□□□□□ -0.71
LIMCH1-222ENST00000515847 USP21Q9UK80 565 aa10.62□□□□□ -0.71
LIMCH1-222ENST00000515847 NFAT5O94916 1531 aa10.62□□□□□ -0.71
LIMCH1-222ENST00000515847 USP31Q70CQ4 1352 aa10.62□□□□□ -0.71
LIMCH1-222ENST00000515847 FAM83GA6ND36 823 aa10.61□□□□□ -0.71
LIMCH1-222ENST00000515847 GCP02774 474 aa10.61□□□□□ -0.71
LIMCH1-222ENST00000515847 ZC3H6P61129 1189 aaKnown RBP10.61□□□□□ -0.71
LIMCH1-222ENST00000515847 ILDR2Q71H61 639 aa10.61□□□□□ -0.71
LIMCH1-222ENST00000515847 PRDM11Q9NQV5 511 aa10.61□□□□□ -0.71
LIMCH1-222ENST00000515847 LMO7Q8WWI1 1683 aa10.6□□□□□ -0.71
LIMCH1-222ENST00000515847 SOX12O15370 315 aa10.6□□□□□ -0.71
LIMCH1-222ENST00000515847 CHRNA2Q15822 529 aa10.6□□□□□ -0.71
LIMCH1-222ENST00000515847 COG3Q96JB2 828 aa10.6□□□□□ -0.71
LIMCH1-222ENST00000515847 CARD14Q9BXL6 1004 aa10.6□□□□□ -0.71
LIMCH1-222ENST00000515847 KNSTRNQ9Y448 316 aa10.6□□□□□ -0.71
LIMCH1-222ENST00000515847 CPDO75976 1380 aa10.6□□□□□ -0.71
LIMCH1-222ENST00000515847 ATRNO75882 1429 aa10.59□□□□□ -0.71
LIMCH1-222ENST00000515847 C19orf67A6NJJ6 358 aa10.59□□□□□ -0.71
LIMCH1-222ENST00000515847 WASHC2AQ641Q2 1341 aa10.58□□□□□ -0.71
LIMCH1-222ENST00000515847 ZBTB7CA1YPR0 619 aa10.58□□□□□ -0.72
LIMCH1-222ENST00000515847 UNC5CLQ8IV45 518 aa10.58□□□□□ -0.72
LIMCH1-222ENST00000515847 QTRT2Q9H974 415 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-222ENST00000515847 BTG4Q9NY30 223 aa10.58□□□□□ -0.72
LIMCH1-222ENST00000515847 TRPC5Q9UL62 973 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-222ENST00000515847 ABCC6O95255 1503 aa10.58□□□□□ -0.72
LIMCH1-222ENST00000515847 LTN1O94822 1766 aa10.57□□□□□ -0.72
LIMCH1-222ENST00000515847 COL18A1P39060 1754 aa10.57□□□□□ -0.72
LIMCH1-222ENST00000515847 CAMTA1Q9Y6Y1 1673 aa10.57□□□□□ -0.72
LIMCH1-222ENST00000515847 FYB1O15117 783 aa10.57□□□□□ -0.72
LIMCH1-222ENST00000515847 GGNBP2Q9H3C7 697 aa10.57□□□□□ -0.72
LIMCH1-222ENST00000515847 PANK3Q9H999 370 aa10.57□□□□□ -0.72
LIMCH1-222ENST00000515847 GLI3P10071 1580 aa10.56□□□□□ -0.72
LIMCH1-222ENST00000515847 ANKRD26Q9UPS8 1709 aa10.56□□□□□ -0.72
LIMCH1-222ENST00000515847 ARHGEF25Q86VW2 580 aa10.56□□□□□ -0.72
LIMCH1-222ENST00000515847 COL5A2P05997 1499 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-222ENST00000515847 AATKQ6ZMQ8 1374 aa10.55□□□□□ -0.72
LIMCH1-222ENST00000515847 NPC1L1Q9UHC9 1359 aa10.55□□□□□ -0.72
LIMCH1-222ENST00000515847 RGPD5Q99666 1765 aa10.55□□□□□ -0.72
LIMCH1-222ENST00000515847 SPDYE4A6NLX3 237 aa10.55□□□□□ -0.72
LIMCH1-222ENST00000515847 RXRBP28702 533 aa10.55□□□□□ -0.72
LIMCH1-222ENST00000515847 RBM6P78332 1123 aaKnown RBP10.55□□□□□ -0.72
LIMCH1-222ENST00000515847 CDK12Q9NYV4 1490 aaPredicted RBP10.55□□□□□ -0.72
LIMCH1-222ENST00000515847 RTL1A6NKG5 1358 aa10.54□□□□□ -0.72
LIMCH1-222ENST00000515847 KIF24Q5T7B8 1368 aa10.54□□□□□ -0.72
LIMCH1-222ENST00000515847 ZNF316A6NFI3 1004 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-222ENST00000515847 RGS12O14924 1447 aa10.54□□□□□ -0.72
LIMCH1-222ENST00000515847 VPS72Q15906 364 aa10.54□□□□□ -0.72
LIMCH1-222ENST00000515847 GJD4Q96KN9 370 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-222ENST00000515847 STRN4Q9NRL3 753 aa10.54□□□□□ -0.72
LIMCH1-222ENST00000515847 CCDC9Q9Y3X0 531 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-222ENST00000515847 SMG6Q86US8 1419 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-222ENST00000515847 FBLN1P23142 703 aa10.53□□□□□ -0.72
LIMCH1-222ENST00000515847 AXIN2Q9Y2T1 843 aa10.52□□□□□ -0.73
LIMCH1-222ENST00000515847 MAP3K19Q56UN5 1328 aa10.52□□□□□ -0.73
LIMCH1-222ENST00000515847 SPATA31A5Q5VU36 1347 aa10.52□□□□□ -0.73
LIMCH1-222ENST00000515847 SPATA31A7Q8IWB4 1347 aa10.52□□□□□ -0.73
LIMCH1-222ENST00000515847 BLMP54132 1417 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-222ENST00000515847 PEAK1Q9H792 1746 aa10.51□□□□□ -0.73
LIMCH1-222ENST00000515847 EVA1CP58658 441 aa10.51□□□□□ -0.73
LIMCH1-222ENST00000515847 RRS1Q15050 365 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-222ENST00000515847 LARP1Q6PKG0 1096 aaKnown RBP10.51□□□□□ -0.73
LIMCH1-222ENST00000515847 MORC1Q86VD1 984 aa10.51□□□□□ -0.73
LIMCH1-222ENST00000515847 AMER1Q5JTC6 1135 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-222ENST00000515847 SPATA31A1Q5TZJ5 1347 aa10.5□□□□□ -0.73
LIMCH1-222ENST00000515847 THSD7AQ9UPZ6 1657 aa10.5□□□□□ -0.73
LIMCH1-222ENST00000515847 CRB1P82279 1406 aa10.5□□□□□ -0.73
LIMCH1-222ENST00000515847 PER1O15534 1290 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-222ENST00000515847 HOXC9P31274 260 aa10.49□□□□□ -0.73
LIMCH1-222ENST00000515847 FAM98CQ17RN3 349 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-222ENST00000515847 USP35Q9P2H5 1018 aa10.49□□□□□ -0.73
LIMCH1-222ENST00000515847 FARP1Q9Y4F1 1045 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-222ENST00000515847 WDR17Q8IZU2 1322 aa10.49□□□□□ -0.73
LIMCH1-222ENST00000515847 FLT4P35916 1363 aa10.49□□□□□ -0.73
LIMCH1-222ENST00000515847 BRWD3Q6RI45 1802 aa10.49□□□□□ -0.73
LIMCH1-222ENST00000515847 WNK3Q9BYP7 1800 aa10.49□□□□□ -0.73
LIMCH1-222ENST00000515847 EP400Q96L91 3159 aa10.49□□□□□ -0.73
LIMCH1-222ENST00000515847 CSB-PGBD3P0DP91 1061 aa10.48□□□□□ -0.73
LIMCH1-222ENST00000515847 TNNT2P45379 298 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-222ENST00000515847 AMPHP49418 695 aa10.48□□□□□ -0.73
LIMCH1-222ENST00000515847 IP6K1Q92551 441 aa10.48□□□□□ -0.73
LIMCH1-222ENST00000515847 EMILIN1Q9Y6C2 1016 aa10.48□□□□□ -0.73
LIMCH1-222ENST00000515847 MAP2P11137 1827 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-222ENST00000515847 ERBB3P21860 1342 aa10.48□□□□□ -0.73
LIMCH1-222ENST00000515847 FAM208AQ9UK61 1670 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-222ENST00000515847 A0A0G2JS52 829 aa10.47□□□□□ -0.73
LIMCH1-222ENST00000515847 MYT1Q01538 1121 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms