RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CYP46A1Q9Y6A2 500 aa13.18□□□□□ -0.3
LIMCH1-217ENST00000512946 APAF1O14727 1248 aa13.18□□□□□ -0.3
LIMCH1-217ENST00000512946 TEFQ10587 303 aa13.18□□□□□ -0.3
LIMCH1-217ENST00000512946 A0A1B0GUA9 196 aa13.18□□□□□ -0.3
LIMCH1-217ENST00000512946 PANK3Q9H999 370 aa13.18□□□□□ -0.3
LIMCH1-217ENST00000512946 CNKSR2Q8WXI2 1034 aa13.17□□□□□ -0.3
LIMCH1-217ENST00000512946 ANO10Q9NW15 660 aa13.17□□□□□ -0.3
LIMCH1-217ENST00000512946 CDKL5O76039 1030 aa13.17□□□□□ -0.3
LIMCH1-217ENST00000512946 BRPF1P55201 1214 aaPredicted RBP13.17□□□□□ -0.3
LIMCH1-217ENST00000512946 SPA17Q15506 151 aa13.17□□□□□ -0.3
LIMCH1-217ENST00000512946 BCL2L13Q9BXK5 485 aa13.17□□□□□ -0.3
LIMCH1-217ENST00000512946 SEPT11Q9NVA2 429 aaKnown RBP13.17□□□□□ -0.3
LIMCH1-217ENST00000512946 NOL7Q9UMY1 257 aaKnown RBP13.17□□□□□ -0.3
LIMCH1-217ENST00000512946 PLEKHH1Q9ULM0 1364 aa13.17□□□□□ -0.3
LIMCH1-217ENST00000512946 NSRP1Q9H0G5 558 aaKnown RBP13.17□□□□□ -0.3
LIMCH1-217ENST00000512946 SH3BGRP55822 239 aaPredicted RBP13.16□□□□□ -0.3
LIMCH1-217ENST00000512946 IFFO1Q0D2I5 559 aa13.16□□□□□ -0.3
LIMCH1-217ENST00000512946 C1orf141Q5JVX7 400 aa13.16□□□□□ -0.3
LIMCH1-217ENST00000512946 TRIM22Q8IYM9 498 aa13.16□□□□□ -0.3
LIMCH1-217ENST00000512946 SRCIN1Q9C0H9 1055 aa13.16□□□□□ -0.3
LIMCH1-217ENST00000512946 SENP3Q9H4L4 574 aaPredicted RBP13.16□□□□□ -0.3
LIMCH1-217ENST00000512946 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.16□□□□□ -0.3
LIMCH1-217ENST00000512946 KIF20AO95235 890 aa13.16□□□□□ -0.3
LIMCH1-217ENST00000512946 PPP4R3BQ5MIZ7 849 aa13.16□□□□□ -0.3
LIMCH1-217ENST00000512946 WWC2Q6AWC2 1192 aa13.16□□□□□ -0.3
LIMCH1-217ENST00000512946 SRRTQ9BXP5 876 aaKnown RBP13.16□□□□□ -0.3
LIMCH1-217ENST00000512946 KIF3CO14782 793 aa13.16□□□□□ -0.3
LIMCH1-217ENST00000512946 ME1P48163 572 aa13.16□□□□□ -0.3
LIMCH1-217ENST00000512946 KIF4BQ2VIQ3 1234 aa13.16□□□□□ -0.3
LIMCH1-217ENST00000512946 BMP2KQ9NSY1 1161 aaPredicted RBP13.16□□□□□ -0.3
LIMCH1-217ENST00000512946 USO1O60763 962 aaKnown RBP13.15□□□□□ -0.3
LIMCH1-217ENST00000512946 TNNT1P13805 278 aa13.15□□□□□ -0.3
LIMCH1-217ENST00000512946 CCDC183Q5T5S1 534 aa13.15□□□□□ -0.3
LIMCH1-217ENST00000512946 URI1O94763 535 aaPredicted RBP13.15□□□□□ -0.3
LIMCH1-217ENST00000512946 SLC3A2P08195 630 aaKnown RBP13.15□□□□□ -0.3
LIMCH1-217ENST00000512946 VPS36Q86VN1 386 aa13.15□□□□□ -0.3
LIMCH1-217ENST00000512946 SPATA32Q96LK8 384 aa13.15□□□□□ -0.3
LIMCH1-217ENST00000512946 POTEJP0CG39 1038 aa13.15□□□□□ -0.3
LIMCH1-217ENST00000512946 KRT32Q14532 448 aa13.15□□□□□ -0.3
LIMCH1-217ENST00000512946 CCDC171Q6TFL3 1326 aa13.15□□□□□ -0.3
LIMCH1-217ENST00000512946 CLGNO14967 610 aa13.14□□□□□ -0.31
LIMCH1-217ENST00000512946 SMAP1Q8IYB5 467 aaPredicted RBP13.14□□□□□ -0.31
LIMCH1-217ENST00000512946 SAFB2Q14151 953 aaKnown RBP eCLIP13.14□□□□□ -0.31
LIMCH1-217ENST00000512946 CCDC27Q2M243 656 aa13.14□□□□□ -0.31
LIMCH1-217ENST00000512946 CCDC57Q2TAC2 916 aa13.14□□□□□ -0.31
LIMCH1-217ENST00000512946 EHBP1Q8NDI1 1231 aa13.14□□□□□ -0.31
LIMCH1-217ENST00000512946 SCAND2PQ9GZW5 306 aaPredicted RBP13.14□□□□□ -0.31
LIMCH1-217ENST00000512946 FBF1Q8TES7 1133 aa13.14□□□□□ -0.31
LIMCH1-217ENST00000512946 CEP83Q9Y592 693 aa13.14□□□□□ -0.31
LIMCH1-217ENST00000512946 WASHC2AQ641Q2 1341 aa13.14□□□□□ -0.31
LIMCH1-217ENST00000512946 WASHC2CQ9Y4E1 1318 aa13.14□□□□□ -0.31
LIMCH1-217ENST00000512946 HMGB1P1B2RPK0 211 aaPredicted RBP13.14□□□□□ -0.31
LIMCH1-217ENST00000512946 DIAPH1O60610 1272 aaKnown RBP13.14□□□□□ -0.31
LIMCH1-217ENST00000512946 PRDM10Q9NQV6 1147 aa13.14□□□□□ -0.31
LIMCH1-217ENST00000512946 STK26Q9P289 416 aa13.14□□□□□ -0.31
LIMCH1-217ENST00000512946 CNTLNQ9NXG0 1405 aa13.14□□□□□ -0.31
LIMCH1-217ENST00000512946 LMAN1P49257 510 aa13.13□□□□□ -0.31
LIMCH1-217ENST00000512946 SARNPP82979 210 aaKnown RBP13.13□□□□□ -0.31
LIMCH1-217ENST00000512946 TTC31Q49AM3 519 aaPredicted RBP13.13□□□□□ -0.31
LIMCH1-217ENST00000512946 CEP112Q8N8E3 955 aa13.13□□□□□ -0.31
LIMCH1-217ENST00000512946 RSRC1Q96IZ7 334 aaKnown RBP13.13□□□□□ -0.31
LIMCH1-217ENST00000512946 EVC2Q86UK5 1308 aa13.13□□□□□ -0.31
LIMCH1-217ENST00000512946 A6NNZ2 444 aa13.13□□□□□ -0.31
LIMCH1-217ENST00000512946 KRT18P05783 430 aaKnown RBP13.13□□□□□ -0.31
LIMCH1-217ENST00000512946 TUBB8Q3ZCM7 444 aa13.13□□□□□ -0.31
LIMCH1-217ENST00000512946 LARP1BQ659C4 914 aaKnown RBP13.13□□□□□ -0.31
LIMCH1-217ENST00000512946 WASF1Q92558 559 aa13.13□□□□□ -0.31
LIMCH1-217ENST00000512946 COG3Q96JB2 828 aa13.13□□□□□ -0.31
LIMCH1-217ENST00000512946 FKBP5Q13451 457 aaPredicted RBP13.13□□□□□ -0.31
LIMCH1-217ENST00000512946 HS1BP3Q53T59 392 aa13.13□□□□□ -0.31
LIMCH1-217ENST00000512946 ZHX1Q9UKY1 873 aaPredicted RBP13.13□□□□□ -0.31
LIMCH1-217ENST00000512946 FAM184BQ9ULE4 1060 aa13.13□□□□□ -0.31
LIMCH1-217ENST00000512946 TBC1D2BQ9UPU7 963 aa13.13□□□□□ -0.31
LIMCH1-217ENST00000512946 RRP7AQ9Y3A4 280 aaKnown RBP13.13□□□□□ -0.31
LIMCH1-217ENST00000512946 PAK3O75914 559 aaPredicted RBP13.12□□□□□ -0.31
LIMCH1-217ENST00000512946 MAPK8IP2Q13387 824 aaPredicted RBP13.12□□□□□ -0.31
LIMCH1-217ENST00000512946 CFAP100Q494V2 611 aa13.12□□□□□ -0.31
LIMCH1-217ENST00000512946 FAM177A1Q8N128 213 aaPredicted RBP13.12□□□□□ -0.31
LIMCH1-217ENST00000512946 BCL11BQ9C0K0 894 aaPredicted RBP13.12□□□□□ -0.31
LIMCH1-217ENST00000512946 CEP131Q9UPN4 1083 aa13.12□□□□□ -0.31
LIMCH1-217ENST00000512946 KIF5BP33176 963 aa13.12□□□□□ -0.31
LIMCH1-217ENST00000512946 EIF5P55010 431 aaKnown RBP13.12□□□□□ -0.31
LIMCH1-217ENST00000512946 FGFR1OPO95684 399 aaKnown RBP13.12□□□□□ -0.31
LIMCH1-217ENST00000512946 FSD1Q9BTV5 496 aa13.12□□□□□ -0.31
LIMCH1-217ENST00000512946 PDZRN3Q9UPQ7 1066 aa13.12□□□□□ -0.31
LIMCH1-217ENST00000512946 ZFYP08048 801 aaPredicted RBP13.12□□□□□ -0.31
LIMCH1-217ENST00000512946 UBTFL1P0CB47 393 aaPredicted RBP13.12□□□□□ -0.31
LIMCH1-217ENST00000512946 SPECC1Q5M775 1068 aa13.12□□□□□ -0.31
LIMCH1-217ENST00000512946 RASSF4Q9H2L5 321 aa13.11□□□□□ -0.31
LIMCH1-217ENST00000512946 DHX57Q6P158 1386 aaKnown RBP13.11□□□□□ -0.31
LIMCH1-217ENST00000512946 TTC5Q8N0Z6 440 aa13.11□□□□□ -0.31
LIMCH1-217ENST00000512946 CCDC9Q9Y3X0 531 aaKnown RBP13.11□□□□□ -0.31
LIMCH1-217ENST00000512946 OPA1O60313 960 aa13.11□□□□□ -0.31
LIMCH1-217ENST00000512946 ARFGAP2Q8N6H7 521 aa13.11□□□□□ -0.31
LIMCH1-217ENST00000512946 ST20-MTHFSA0A0A6YYL1 179 aa13.11□□□□□ -0.31
LIMCH1-217ENST00000512946 CKAP4Q07065 602 aaKnown RBP13.11□□□□□ -0.31
LIMCH1-217ENST00000512946 VPS37DQ86XT2 251 aa13.11□□□□□ -0.31
LIMCH1-217ENST00000512946 STMN4Q9H169 189 aaPredicted RBP13.11□□□□□ -0.31
LIMCH1-217ENST00000512946 RIPK4P57078 832 aa13.1□□□□□ -0.31
LIMCH1-217ENST00000512946 CCDC6Q16204 474 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms