RNA–Protein interactions for RNA: ENST00000497739.1

PTPN3-206, Transcript of protein tyrosine phosphatase, non-receptor type 3, human

TSL 3

Gene PTPN3, Length 781 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN3-206	ENST00000497739	RIOK3	O14730	519 aa	Known RBP	13.67	□□□□□ -0.22
PTPN3-206	ENST00000497739	GALR2	O43603	387 aa	Predicted RBP	13.67	□□□□□ -0.22
PTPN3-206	ENST00000497739	R3HDM1	Q15032	1099 aa	Known RBP	13.67	□□□□□ -0.22
PTPN3-206	ENST00000497739	PMFBP1	Q8TBY8	1022 aa		13.67	□□□□□ -0.22
PTPN3-206	ENST00000497739	SP7	Q8TDD2	431 aa	Predicted RBP	13.67	□□□□□ -0.22
PTPN3-206	ENST00000497739	TULP4	Q9NRJ4	1543 aa		13.66	□□□□□ -0.22
PTPN3-206	ENST00000497739	SAFB2	Q14151	953 aa	Known RBP eCLIP	13.66	□□□□□ -0.22
PTPN3-206	ENST00000497739	LMOD2	Q6P5Q4	547 aa		13.66	□□□□□ -0.22
PTPN3-206	ENST00000497739	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.66	□□□□□ -0.22
PTPN3-206	ENST00000497739	NEUROD1	Q13562	356 aa		13.65	□□□□□ -0.22
PTPN3-206	ENST00000497739	CAMKK2	Q96RR4	588 aa		13.65	□□□□□ -0.22
PTPN3-206	ENST00000497739	TRPC6	Q9Y210	931 aa		13.65	□□□□□ -0.22
PTPN3-206	ENST00000497739	UTRN	P46939	3433 aa		13.65	□□□□□ -0.22
PTPN3-206	ENST00000497739		A0A0G2JS52	829 aa		13.64	□□□□□ -0.23
PTPN3-206	ENST00000497739	MYT1	Q01538	1121 aa		13.64	□□□□□ -0.23
PTPN3-206	ENST00000497739	EZH2	Q15910	746 aa	Known RBP	13.63	□□□□□ -0.23
PTPN3-206	ENST00000497739	POGK	Q9P215	609 aa		13.63	□□□□□ -0.23
PTPN3-206	ENST00000497739	SPATA31A1	Q5TZJ5	1347 aa		13.63	□□□□□ -0.23
PTPN3-206	ENST00000497739	RREB1	Q92766	1687 aa		13.62	□□□□□ -0.23
PTPN3-206	ENST00000497739	KIAA1210	Q9ULL0	1709 aa		13.61	□□□□□ -0.23
PTPN3-206	ENST00000497739	ATP7B	P35670	1465 aa		13.61	□□□□□ -0.23
PTPN3-206	ENST00000497739	GPRASP1	Q5JY77	1395 aa		13.61	□□□□□ -0.23
PTPN3-206	ENST00000497739	PARD3	Q8TEW0	1356 aa		13.61	□□□□□ -0.23
PTPN3-206	ENST00000497739	TONSL	Q96HA7	1378 aa		13.61	□□□□□ -0.23
PTPN3-206	ENST00000497739	HIRIP3	Q9BW71	556 aa	Predicted RBP	13.61	□□□□□ -0.23
PTPN3-206	ENST00000497739	KIAA0232	Q92628	1395 aa		13.6	□□□□□ -0.23
PTPN3-206	ENST00000497739	NUP188	Q5SRE5	1749 aa		13.6	□□□□□ -0.23
PTPN3-206	ENST00000497739	PCGF6	Q9BYE7	350 aa		13.6	□□□□□ -0.23
PTPN3-206	ENST00000497739	PRDM11	Q9NQV5	511 aa		13.6	□□□□□ -0.23
PTPN3-206	ENST00000497739	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.6	□□□□□ -0.23
PTPN3-206	ENST00000497739	EIF3A	Q14152	1382 aa	Known RBP	13.59	□□□□□ -0.23
PTPN3-206	ENST00000497739	TRIM37	O94972	964 aa		13.58	□□□□□ -0.24
PTPN3-206	ENST00000497739	TRAK1	Q9UPV9	953 aa		13.58	□□□□□ -0.24
PTPN3-206	ENST00000497739	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.58	□□□□□ -0.24
PTPN3-206	ENST00000497739	WASL	O00401	505 aa	Predicted RBP	13.57	□□□□□ -0.24
PTPN3-206	ENST00000497739	FAM196A	Q6ZSG2	479 aa		13.57	□□□□□ -0.24
PTPN3-206	ENST00000497739	SIN3A	Q96ST3	1273 aa		13.57	□□□□□ -0.24
PTPN3-206	ENST00000497739	NRK	Q7Z2Y5	1582 aa		13.57	□□□□□ -0.24
PTPN3-206	ENST00000497739	LMO7	Q8WWI1	1683 aa		13.56	□□□□□ -0.24
PTPN3-206	ENST00000497739	SSH2	Q76I76	1423 aa		13.56	□□□□□ -0.24
PTPN3-206	ENST00000497739	PDAP1	Q13442	181 aa	Known RBP	13.56	□□□□□ -0.24
PTPN3-206	ENST00000497739	CHRNA2	Q15822	529 aa		13.56	□□□□□ -0.24
PTPN3-206	ENST00000497739	ARHGEF28	Q8N1W1	1705 aa	Known RBP	13.56	□□□□□ -0.24
PTPN3-206	ENST00000497739	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.55	□□□□□ -0.24
PTPN3-206	ENST00000497739	PSEN1	P49768	467 aa		13.55	□□□□□ -0.24
PTPN3-206	ENST00000497739	BARGIN	Q6ZT62	677 aa		13.55	□□□□□ -0.24
PTPN3-206	ENST00000497739	L3MBTL2	Q969R5	705 aa		13.55	□□□□□ -0.24
PTPN3-206	ENST00000497739	ZFP91	Q96JP5	570 aa	Predicted RBP	13.55	□□□□□ -0.24
PTPN3-206	ENST00000497739	CAMTA1	Q9Y6Y1	1673 aa		13.55	□□□□□ -0.24
PTPN3-206	ENST00000497739	POLR3A	O14802	1390 aa	Predicted RBP	13.55	□□□□□ -0.24
PTPN3-206	ENST00000497739	TOPAZ1	Q8N9V7	1692 aa		13.54	□□□□□ -0.24
PTPN3-206	ENST00000497739	APBA3	O96018	575 aa		13.53	□□□□□ -0.24
PTPN3-206	ENST00000497739	NGDN	Q8NEJ9	315 aa	Known RBP	13.53	□□□□□ -0.24
PTPN3-206	ENST00000497739	CPD	O75976	1380 aa		13.53	□□□□□ -0.24
PTPN3-206	ENST00000497739	TIE1	P35590	1138 aa		13.52	□□□□□ -0.25
PTPN3-206	ENST00000497739	STRN4	Q9NRL3	753 aa		13.52	□□□□□ -0.25
PTPN3-206	ENST00000497739	USP19	O94966	1318 aa		13.52	□□□□□ -0.25
PTPN3-206	ENST00000497739	ROCK2	O75116	1388 aa	Known RBP	13.52	□□□□□ -0.25
PTPN3-206	ENST00000497739	TRPM1	Q7Z4N2	1603 aa		13.52	□□□□□ -0.25
PTPN3-206	ENST00000497739	ITSN1	Q15811	1721 aa		13.52	□□□□□ -0.25
PTPN3-206	ENST00000497739	PEAK1	Q9H792	1746 aa		13.52	□□□□□ -0.25
PTPN3-206	ENST00000497739	YY1	P25490	414 aa		13.51	□□□□□ -0.25
PTPN3-206	ENST00000497739	LARP1	Q6PKG0	1096 aa	Known RBP	13.51	□□□□□ -0.25
PTPN3-206	ENST00000497739	NINL	Q9Y2I6	1382 aa		13.5	□□□□□ -0.25
PTPN3-206	ENST00000497739	ZC3H6	P61129	1189 aa	Known RBP	13.5	□□□□□ -0.25
PTPN3-206	ENST00000497739	NUDT16	Q96DE0	195 aa	Known RBP	13.5	□□□□□ -0.25
PTPN3-206	ENST00000497739	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.5	□□□□□ -0.25
PTPN3-206	ENST00000497739	TAOK2	Q9UL54	1235 aa		13.5	□□□□□ -0.25
PTPN3-206	ENST00000497739	PARP4	Q9UKK3	1724 aa	Known RBP	13.5	□□□□□ -0.25
PTPN3-206	ENST00000497739	COL5A2	P05997	1499 aa	Predicted RBP	13.49	□□□□□ -0.25
PTPN3-206	ENST00000497739	NUTM2G	Q5VZR2	741 aa		13.49	□□□□□ -0.25
PTPN3-206	ENST00000497739	CCER1	Q8TC90	406 aa	Predicted RBP	13.49	□□□□□ -0.25
PTPN3-206	ENST00000497739	USP35	Q9P2H5	1018 aa		13.49	□□□□□ -0.25
PTPN3-206	ENST00000497739	QRICH2	Q9H0J4	1663 aa		13.49	□□□□□ -0.25
PTPN3-206	ENST00000497739	RGPD3	A6NKT7	1758 aa	Predicted RBP	13.48	□□□□□ -0.25
PTPN3-206	ENST00000497739	RGPD4	Q7Z3J3	1758 aa		13.48	□□□□□ -0.25
PTPN3-206	ENST00000497739	POTEI	P0CG38	1075 aa		13.48	□□□□□ -0.25
PTPN3-206	ENST00000497739	HS6ST3	Q8IZP7	471 aa		13.48	□□□□□ -0.25
PTPN3-206	ENST00000497739	TCP11L2	Q8N4U5	519 aa		13.48	□□□□□ -0.25
PTPN3-206	ENST00000497739	CASZ1	Q86V15	1759 aa		13.48	□□□□□ -0.25
PTPN3-206	ENST00000497739	ACE	P12821	1306 aa		13.47	□□□□□ -0.25
PTPN3-206	ENST00000497739	TTLL13P	A6NNM8	815 aa		13.47	□□□□□ -0.25
PTPN3-206	ENST00000497739	LRRC37A3	O60309	1634 aa		13.46	□□□□□ -0.25
PTPN3-206	ENST00000497739	CLSPN	Q9HAW4	1339 aa		13.46	□□□□□ -0.25
PTPN3-206	ENST00000497739	CENPJ	Q9HC77	1338 aa	Predicted RBP	13.46	□□□□□ -0.25
PTPN3-206	ENST00000497739	PLEKHG3	A1L390	1219 aa		13.46	□□□□□ -0.25
PTPN3-206	ENST00000497739	KCNQ2	O43526	872 aa		13.46	□□□□□ -0.25
PTPN3-206	ENST00000497739	PDE3B	Q13370	1112 aa		13.46	□□□□□ -0.25
PTPN3-206	ENST00000497739	NBPF8	Q3BBV2	869 aa		13.46	□□□□□ -0.25
PTPN3-206	ENST00000497739	ASTL	Q6HA08	431 aa	Predicted RBP	13.46	□□□□□ -0.25
PTPN3-206	ENST00000497739	TMEM106C	Q9BVX2	250 aa		13.46	□□□□□ -0.25
PTPN3-206	ENST00000497739	SPON1	Q9HCB6	807 aa		13.46	□□□□□ -0.25
PTPN3-206	ENST00000497739	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.46	□□□□□ -0.25
PTPN3-206	ENST00000497739	ATMIN	O43313	823 aa	Predicted RBP	13.45	□□□□□ -0.26
PTPN3-206	ENST00000497739	NBPF1	Q3BBV0	1214 aa		13.45	□□□□□ -0.26
PTPN3-206	ENST00000497739	CDK19	Q9BWU1	502 aa		13.45	□□□□□ -0.26
PTPN3-206	ENST00000497739	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.45	□□□□□ -0.26
PTPN3-206	ENST00000497739	THRAP3	Q9Y2W1	955 aa	Known RBP	13.45	□□□□□ -0.26
PTPN3-206	ENST00000497739	OVOS2	A0A0G2JMS6	1433 aa		13.45	□□□□□ -0.26
PTPN3-206	ENST00000497739	OVOS2	A0A0J9YW53	1432 aa		13.45	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms