RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 DNMBPQ6XZF7 1577 aa15.7■□□□□ 0.1
PTPRF-215ENST00000496447 CD109Q6YHK3 1445 aa15.7■□□□□ 0.1
PTPRF-215ENST00000496447 GPS2Q13227 327 aa15.69■□□□□ 0.1
PTPRF-215ENST00000496447 CCDC61Q9Y6R9 512 aa15.69■□□□□ 0.1
PTPRF-215ENST00000496447 OFD1O75665 1012 aa15.69■□□□□ 0.1
PTPRF-215ENST00000496447 HMGB2P26583 209 aaKnown RBP15.69■□□□□ 0.1
PTPRF-215ENST00000496447 NBPF8Q3BBV2 869 aa15.69■□□□□ 0.1
PTPRF-215ENST00000496447 LRRCC1Q9C099 1032 aa15.69■□□□□ 0.1
PTPRF-215ENST00000496447 KIAA0586Q9BVV6 1533 aa15.69■□□□□ 0.1
PTPRF-215ENST00000496447 STK11IPQ8N1F8 1099 aa15.68■□□□□ 0.1
PTPRF-215ENST00000496447 NAT10Q9H0A0 1025 aaKnown RBP15.68■□□□□ 0.1
PTPRF-215ENST00000496447 TOP2BQ02880 1626 aa15.68■□□□□ 0.1
PTPRF-215ENST00000496447 WWC2Q6AWC2 1192 aa15.68■□□□□ 0.1
PTPRF-215ENST00000496447 PDZRN3Q9UPQ7 1066 aa15.68■□□□□ 0.1
PTPRF-215ENST00000496447 NEK4P51957 841 aa15.68■□□□□ 0.1
PTPRF-215ENST00000496447 NOM1Q5C9Z4 860 aaKnown RBP15.68■□□□□ 0.1
PTPRF-215ENST00000496447 ZSCAN25Q6NSZ9 544 aa15.68■□□□□ 0.1
PTPRF-215ENST00000496447 WDR63Q8IWG1 891 aa15.67■□□□□ 0.1
PTPRF-215ENST00000496447 STARD3NLO95772 234 aa15.67■□□□□ 0.1
PTPRF-215ENST00000496447 TXLNAP40222 546 aa15.67■□□□□ 0.1
PTPRF-215ENST00000496447 PDE3AQ14432 1141 aa15.67■□□□□ 0.1
PTPRF-215ENST00000496447 EPRSP07814 1512 aaKnown RBP15.66■□□□□ 0.1
PTPRF-215ENST00000496447 CT47B1P0C2W7 299 aaPredicted RBP15.66■□□□□ 0.1
PTPRF-215ENST00000496447 KRT18P05783 430 aaKnown RBP15.66■□□□□ 0.1
PTPRF-215ENST00000496447 FKBP4Q02790 459 aaKnown RBP eCLIP15.66■□□□□ 0.1
PTPRF-215ENST00000496447 SUPT6HQ7KZ85 1726 aaKnown RBP15.66■□□□□ 0.1
PTPRF-215ENST00000496447 PRXQ9BXM0 1461 aa15.66■□□□□ 0.1
PTPRF-215ENST00000496447 GNAT3A8MTJ3 354 aa15.66■□□□□ 0.1
PTPRF-215ENST00000496447 FCHSD2O94868 740 aa15.65■□□□□ 0.1
PTPRF-215ENST00000496447 PDCP20941 246 aa15.65■□□□□ 0.1
PTPRF-215ENST00000496447 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.65■□□□□ 0.1
PTPRF-215ENST00000496447 ZFYVE27Q5T4F4 411 aa15.65■□□□□ 0.1
PTPRF-215ENST00000496447 CEP126Q9P2H0 1117 aa15.65■□□□□ 0.1
PTPRF-215ENST00000496447 CDK13Q14004 1512 aaKnown RBP15.65■□□□□ 0.1
PTPRF-215ENST00000496447 IGHMBP2P38935 993 aaKnown RBP15.65■□□□□ 0.1
PTPRF-215ENST00000496447 ZSCAN29Q8IWY8 852 aaPredicted RBP15.65■□□□□ 0.1
PTPRF-215ENST00000496447 BCAR3O75815 825 aa15.65■□□□□ 0.1
PTPRF-215ENST00000496447 WAPLQ7Z5K2 1190 aa15.65■□□□□ 0.1
PTPRF-215ENST00000496447 AACSQ86V21 672 aa15.65■□□□□ 0.1
PTPRF-215ENST00000496447 MCM2P49736 904 aa15.64■□□□□ 0.09
PTPRF-215ENST00000496447 CCDC39Q9UFE4 941 aa15.64■□□□□ 0.09
PTPRF-215ENST00000496447 ARHGEF11O15085 1522 aa15.64■□□□□ 0.09
PTPRF-215ENST00000496447 SRGAP3O43295 1099 aa15.64■□□□□ 0.09
PTPRF-215ENST00000496447 TMOD3Q9NYL9 352 aa15.64■□□□□ 0.09
PTPRF-215ENST00000496447 CCDC69A6NI79 296 aa15.64■□□□□ 0.09
PTPRF-215ENST00000496447 TRIM22Q8IYM9 498 aa15.64■□□□□ 0.09
PTPRF-215ENST00000496447 RAI14Q9P0K7 980 aa15.63■□□□□ 0.09
PTPRF-215ENST00000496447 CCDC141Q6ZP82 1450 aa15.63■□□□□ 0.09
PTPRF-215ENST00000496447 MAP4K4O95819 1239 aaPredicted RBP15.63■□□□□ 0.09
PTPRF-215ENST00000496447 CALRP27797 417 aaKnown RBP15.63■□□□□ 0.09
PTPRF-215ENST00000496447 PDILTQ8N807 584 aa15.63■□□□□ 0.09
PTPRF-215ENST00000496447 NSD3Q9BZ95 1437 aa15.63■□□□□ 0.09
PTPRF-215ENST00000496447 ATF7IPQ6VMQ6 1270 aa15.63■□□□□ 0.09
PTPRF-215ENST00000496447 ZNF396Q96N95 335 aaPredicted RBP15.63■□□□□ 0.09
PTPRF-215ENST00000496447 KINO60870 393 aaKnown RBP15.63■□□□□ 0.09
PTPRF-215ENST00000496447 ADAMTS2O95450 1211 aa15.63■□□□□ 0.09
PTPRF-215ENST00000496447 TAF3Q5VWG9 929 aa15.63■□□□□ 0.09
PTPRF-215ENST00000496447 CYP46A1Q9Y6A2 500 aa15.63■□□□□ 0.09
PTPRF-215ENST00000496447 STK38Q15208 465 aa15.62■□□□□ 0.09
PTPRF-215ENST00000496447 RABEP1Q15276 862 aa15.62■□□□□ 0.09
PTPRF-215ENST00000496447 CCDC85AQ96PX6 553 aaPredicted RBP15.62■□□□□ 0.09
PTPRF-215ENST00000496447 ZNF652Q9Y2D9 606 aa15.62■□□□□ 0.09
PTPRF-215ENST00000496447 MAGI1Q96QZ7 1491 aaPredicted RBP15.62■□□□□ 0.09
PTPRF-215ENST00000496447 NFE2L2Q16236 605 aa15.62■□□□□ 0.09
PTPRF-215ENST00000496447 TIAM1Q13009 1591 aa15.62■□□□□ 0.09
PTPRF-215ENST00000496447 SOGA3Q5TF21 947 aa15.62■□□□□ 0.09
PTPRF-215ENST00000496447 NUP133Q8WUM0 1156 aa15.62■□□□□ 0.09
PTPRF-215ENST00000496447 FBXO3Q9UK99 471 aa15.61■□□□□ 0.09
PTPRF-215ENST00000496447 PTCD1O75127 700 aaKnown RBP15.61■□□□□ 0.09
PTPRF-215ENST00000496447 NASPP49321 788 aaPredicted RBP15.61■□□□□ 0.09
PTPRF-215ENST00000496447 ADGRL1O94910 1474 aa15.61■□□□□ 0.09
PTPRF-215ENST00000496447 ZPR1O75312 459 aa15.61■□□□□ 0.09
PTPRF-215ENST00000496447 TDO2P48775 406 aa15.61■□□□□ 0.09
PTPRF-215ENST00000496447 CCDC173Q0VFZ6 552 aa15.61■□□□□ 0.09
PTPRF-215ENST00000496447 HMGN5P82970 282 aaKnown RBP15.61■□□□□ 0.09
PTPRF-215ENST00000496447 IFT57Q9NWB7 429 aa15.6■□□□□ 0.09
PTPRF-215ENST00000496447 LRP2BPQ9P2M1 347 aa15.6■□□□□ 0.09
PTPRF-215ENST00000496447 IQGAP2Q13576 1575 aa15.6■□□□□ 0.09
PTPRF-215ENST00000496447 STK3Q13188 491 aa15.6■□□□□ 0.09
PTPRF-215ENST00000496447 ANKRD1Q15327 319 aa15.6■□□□□ 0.09
PTPRF-215ENST00000496447 SPINK5Q9NQ38 1064 aaPredicted RBP15.6■□□□□ 0.09
PTPRF-215ENST00000496447 MAGEC2Q9UBF1 373 aaPredicted RBP15.6■□□□□ 0.09
PTPRF-215ENST00000496447 PHF8Q9UPP1 1060 aa15.6■□□□□ 0.09
PTPRF-215ENST00000496447 TMOD2Q9NZR1 351 aa15.59■□□□□ 0.09
PTPRF-215ENST00000496447 CEBPZQ03701 1054 aaKnown RBP15.59■□□□□ 0.09
PTPRF-215ENST00000496447 MVPQ14764 893 aaKnown RBP15.59■□□□□ 0.09
PTPRF-215ENST00000496447 HSP90AB2PQ58FF8 381 aa15.59■□□□□ 0.09
PTPRF-215ENST00000496447 AMOTL2Q9Y2J4 779 aa15.59■□□□□ 0.09
PTPRF-215ENST00000496447 JMYQ8N9B5 988 aa15.59■□□□□ 0.09
PTPRF-215ENST00000496447 CWC15Q9P013 229 aaKnown RBP15.59■□□□□ 0.09
PTPRF-215ENST00000496447 UBAC1Q9BSL1 405 aa15.58■□□□□ 0.08
PTPRF-215ENST00000496447 MIS18AQ9NYP9 233 aa15.58■□□□□ 0.08
PTPRF-215ENST00000496447 FOXO3O43524 673 aa15.58■□□□□ 0.08
PTPRF-215ENST00000496447 CEBPAP49715 358 aaPredicted RBP15.57■□□□□ 0.08
PTPRF-215ENST00000496447 FILIP1LQ4L180 1135 aa15.57■□□□□ 0.08
PTPRF-215ENST00000496447 NGLY1Q96IV0 654 aa15.57■□□□□ 0.08
PTPRF-215ENST00000496447 CTNNA3Q9UI47 895 aa15.57■□□□□ 0.08
PTPRF-215ENST00000496447 IDH1O75874 414 aaKnown RBP15.57■□□□□ 0.08
PTPRF-215ENST00000496447 MNS1Q8NEH6 495 aa15.57■□□□□ 0.08
PTPRF-215ENST00000496447 LETM1O95202 739 aaPredicted RBP15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms