RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 FSHRP23945 695 aa11.44□□□□□ -0.58
CCDC39-207ENST00000495817 GRM5P41594 1212 aa11.44□□□□□ -0.58
CCDC39-207ENST00000495817 ABL2P42684 1182 aa11.44□□□□□ -0.58
CCDC39-207ENST00000495817 NNTQ13423 1086 aa11.44□□□□□ -0.58
CCDC39-207ENST00000495817 IRF5Q13568 498 aa11.44□□□□□ -0.58
CCDC39-207ENST00000495817 ARXQ96QS3 562 aa11.44□□□□□ -0.58
CCDC39-207ENST00000495817 MYT1Q01538 1121 aa11.43□□□□□ -0.58
CCDC39-207ENST00000495817 HPS1Q92902 700 aa11.43□□□□□ -0.58
CCDC39-207ENST00000495817 TRAF7Q6Q0C0 670 aa11.42□□□□□ -0.58
CCDC39-207ENST00000495817 KCTD15Q96SI1 283 aaPredicted RBP11.42□□□□□ -0.58
CCDC39-207ENST00000495817 CCDC125Q86Z20 511 aa11.41□□□□□ -0.58
CCDC39-207ENST00000495817 SEPT12Q8IYM1 358 aa11.41□□□□□ -0.58
CCDC39-207ENST00000495817 PCDHB9Q9Y5E1 797 aa11.41□□□□□ -0.58
CCDC39-207ENST00000495817 SUPT5HO00267 1087 aaKnown RBP11.4□□□□□ -0.58
CCDC39-207ENST00000495817 EIF4G2P78344 907 aaKnown RBP eCLIP11.4□□□□□ -0.58
CCDC39-207ENST00000495817 DHX9Q08211 1270 aaKnown RBP11.4□□□□□ -0.58
CCDC39-207ENST00000495817 AXIN1O15169 862 aa11.39□□□□□ -0.59
CCDC39-207ENST00000495817 CCDC116Q8IYX3 515 aa11.39□□□□□ -0.59
CCDC39-207ENST00000495817 TRIM52Q96A61 297 aa11.39□□□□□ -0.59
CCDC39-207ENST00000495817 POM121Q96HA1 1249 aa11.39□□□□□ -0.59
CCDC39-207ENST00000495817 ESPNB1AK53 854 aa11.38□□□□□ -0.59
CCDC39-207ENST00000495817 NR3C2P08235 984 aa11.38□□□□□ -0.59
CCDC39-207ENST00000495817 SOX11P35716 441 aa11.38□□□□□ -0.59
CCDC39-207ENST00000495817 AAASQ9NRG9 546 aa11.38□□□□□ -0.59
CCDC39-207ENST00000495817 EMILIN1Q9Y6C2 1016 aa11.38□□□□□ -0.59
CCDC39-207ENST00000495817 INTS6LQ5JSJ4 861 aaKnown RBP11.37□□□□□ -0.59
CCDC39-207ENST00000495817 LCE2BO14633 110 aa11.36□□□□□ -0.59
CCDC39-207ENST00000495817 KLF16Q9BXK1 252 aaPredicted RBP11.36□□□□□ -0.59
CCDC39-207ENST00000495817 TIMP2P16035 220 aa11.35□□□□□ -0.59
CCDC39-207ENST00000495817 WDR4P57081 412 aaKnown RBP11.35□□□□□ -0.59
CCDC39-207ENST00000495817 VAC14Q08AM6 782 aa11.35□□□□□ -0.59
CCDC39-207ENST00000495817 RNF20Q5VTR2 975 aa11.35□□□□□ -0.59
CCDC39-207ENST00000495817 PGPEP1Q9NXJ5 209 aa11.35□□□□□ -0.59
CCDC39-207ENST00000495817 CAPN5O15484 640 aaPredicted RBP11.34□□□□□ -0.59
CCDC39-207ENST00000495817 A6NJR5 290 aa11.33□□□□□ -0.6
CCDC39-207ENST00000495817 ST8SIA5O15466 376 aa11.33□□□□□ -0.6
CCDC39-207ENST00000495817 PPP1R26Q5T8A7 1209 aaPredicted RBP11.33□□□□□ -0.6
CCDC39-207ENST00000495817 PROSER2Q86WR7 435 aaPredicted RBP11.33□□□□□ -0.6
CCDC39-207ENST00000495817 ZIC2O95409 532 aaPredicted RBP11.32□□□□□ -0.6
CCDC39-207ENST00000495817 ITPKCQ96DU7 683 aa11.31□□□□□ -0.6
CCDC39-207ENST00000495817 GIGYF1O75420 1035 aaPredicted RBP11.3□□□□□ -0.6
CCDC39-207ENST00000495817 CLUAP1Q96AJ1 413 aa11.3□□□□□ -0.6
CCDC39-207ENST00000495817 SEMA3FQ13275 785 aa11.29□□□□□ -0.6
CCDC39-207ENST00000495817 FNBP4Q8N3X1 1017 aaPredicted RBP11.29□□□□□ -0.6
CCDC39-207ENST00000495817 CEP126Q9P2H0 1117 aa11.29□□□□□ -0.6
CCDC39-207ENST00000495817 ERVH48-1M5A8F1 160 aa11.28□□□□□ -0.6
CCDC39-207ENST00000495817 HOMEZQ8IX15 550 aa11.28□□□□□ -0.6
CCDC39-207ENST00000495817 ZFAND3Q9H8U3 227 aa11.28□□□□□ -0.6
CCDC39-207ENST00000495817 MEIOBQ8N635 442 aa11.27□□□□□ -0.61
CCDC39-207ENST00000495817 ATP13A2Q9NQ11 1180 aa11.27□□□□□ -0.61
CCDC39-207ENST00000495817 RAB15P59190 212 aa11.26□□□□□ -0.61
CCDC39-207ENST00000495817 SLFNL1Q499Z3 407 aa11.25□□□□□ -0.61
CCDC39-207ENST00000495817 Q6ZVU0 165 aa11.25□□□□□ -0.61
CCDC39-207ENST00000495817 SENP2Q9HC62 589 aa11.25□□□□□ -0.61
CCDC39-207ENST00000495817 ZNF784Q8NCA9 323 aaPredicted RBP11.24□□□□□ -0.61
CCDC39-207ENST00000495817 ALG2Q9H553 416 aa11.24□□□□□ -0.61
CCDC39-207ENST00000495817 UPP2O95045 317 aa11.23□□□□□ -0.61
CCDC39-207ENST00000495817 MRPL14Q6P1L8 145 aaKnown RBP11.23□□□□□ -0.61
CCDC39-207ENST00000495817 RNF135Q8IUD6 432 aa11.23□□□□□ -0.61
CCDC39-207ENST00000495817 SCARF1Q14162 830 aa11.22□□□□□ -0.61
CCDC39-207ENST00000495817 KIFC2Q96AC6 838 aa11.22□□□□□ -0.61
CCDC39-207ENST00000495817 TSEN34Q9BSV6 310 aaKnown RBP11.22□□□□□ -0.61
CCDC39-207ENST00000495817 DACH1Q9UI36 760 aa11.22□□□□□ -0.61
CCDC39-207ENST00000495817 BMP1P13497 986 aa11.21□□□□□ -0.61
CCDC39-207ENST00000495817 ERVK-9P63128 1117 aa11.21□□□□□ -0.61
CCDC39-207ENST00000495817 TRIM46Q7Z4K8 759 aa11.21□□□□□ -0.61
CCDC39-207ENST00000495817 LINC00528Q8N1L1 170 aa11.21□□□□□ -0.61
CCDC39-207ENST00000495817 PHTF2Q8N3S3 785 aa11.21□□□□□ -0.61
CCDC39-207ENST00000495817 NFATC2IPQ8NCF5 419 aa11.21□□□□□ -0.61
CCDC39-207ENST00000495817 TMPRSS4Q9NRS4 437 aa11.21□□□□□ -0.61
CCDC39-207ENST00000495817 CHIC2Q9UKJ5 165 aa11.21□□□□□ -0.61
CCDC39-207ENST00000495817 PCDHB11Q9Y5F2 797 aa11.21□□□□□ -0.61
CCDC39-207ENST00000495817 POM121CA8CG34 1229 aa11.2□□□□□ -0.62
CCDC39-207ENST00000495817 LILRA1O75019 489 aa11.2□□□□□ -0.62
CCDC39-207ENST00000495817 MAP7D1Q3KQU3 841 aa11.2□□□□□ -0.62
CCDC39-207ENST00000495817 CC2D2BQ6DHV5 1058 aa11.2□□□□□ -0.62
CCDC39-207ENST00000495817 TRIM47Q96LD4 638 aa11.19□□□□□ -0.62
CCDC39-207ENST00000495817 DOLKQ9UPQ8 538 aa11.19□□□□□ -0.62
CCDC39-207ENST00000495817 TRAK2O60296 914 aa11.18□□□□□ -0.62
CCDC39-207ENST00000495817 ADH1AP07327 375 aa11.18□□□□□ -0.62
CCDC39-207ENST00000495817 CBLBQ13191 982 aa11.18□□□□□ -0.62
CCDC39-207ENST00000495817 CCDC85AQ96PX6 553 aaPredicted RBP11.18□□□□□ -0.62
CCDC39-207ENST00000495817 CYLDQ9NQC7 956 aa11.18□□□□□ -0.62
CCDC39-207ENST00000495817 GMPR2Q9P2T1 348 aaKnown RBP11.18□□□□□ -0.62
CCDC39-207ENST00000495817 MYCP01106 439 aaPredicted RBP11.16□□□□□ -0.62
CCDC39-207ENST00000495817 CYP2U1Q7Z449 544 aa11.16□□□□□ -0.62
CCDC39-207ENST00000495817 ADAMTS19Q8TE59 1207 aa11.16□□□□□ -0.62
CCDC39-207ENST00000495817 SIRT1Q96EB6 747 aa11.16□□□□□ -0.62
CCDC39-207ENST00000495817 ESF1Q9H501 851 aaKnown RBP11.16□□□□□ -0.62
CCDC39-207ENST00000495817 BMP2P12643 396 aa11.15□□□□□ -0.62
CCDC39-207ENST00000495817 HDGFL1Q5TGJ6 251 aa11.15□□□□□ -0.62
CCDC39-207ENST00000495817 PLPP7Q8NBV4 271 aa11.15□□□□□ -0.62
CCDC39-207ENST00000495817 GLMNQ92990 594 aa11.15□□□□□ -0.62
CCDC39-207ENST00000495817 ZFP42Q96MM3 310 aa11.15□□□□□ -0.62
CCDC39-207ENST00000495817 PURBQ96QR8 312 aaKnown RBP11.15□□□□□ -0.62
CCDC39-207ENST00000495817 C11orf95C9JLR9 678 aaPredicted RBP11.14□□□□□ -0.63
CCDC39-207ENST00000495817 LZTS3O60299 673 aaPredicted RBP11.14□□□□□ -0.63
CCDC39-207ENST00000495817 ZNF787Q6DD87 383 aa11.14□□□□□ -0.63
CCDC39-207ENST00000495817 C1orf115Q9H7X2 142 aa11.14□□□□□ -0.63
CCDC39-207ENST00000495817 SPINT1O43278 529 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms