RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 GLI2P10070 1586 aa11.97□□□□□ -0.49
SYNE1-230ENST00000495090 DYNC1I1O14576 645 aa11.96□□□□□ -0.49
SYNE1-230ENST00000495090 KIF3BO15066 747 aa11.96□□□□□ -0.49
SYNE1-230ENST00000495090 ANKRD45Q5TZF3 282 aa11.96□□□□□ -0.49
SYNE1-230ENST00000495090 LMBRD1Q9NUN5 540 aa11.96□□□□□ -0.49
SYNE1-230ENST00000495090 CHD1O14646 1710 aa11.96□□□□□ -0.49
SYNE1-230ENST00000495090 ZKSCAN5Q9Y2L8 839 aa11.96□□□□□ -0.5
SYNE1-230ENST00000495090 KIF24Q5T7B8 1368 aa11.95□□□□□ -0.5
SYNE1-230ENST00000495090 PNPLA6Q8IY17 1366 aa11.95□□□□□ -0.5
SYNE1-230ENST00000495090 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.95□□□□□ -0.5
SYNE1-230ENST00000495090 ZFYVE9O95405 1425 aa11.94□□□□□ -0.5
SYNE1-230ENST00000495090 MCTP1Q6DN14 999 aa11.94□□□□□ -0.5
SYNE1-230ENST00000495090 CAVIN1Q6NZI2 390 aaKnown RBP11.94□□□□□ -0.5
SYNE1-230ENST00000495090 RBM42Q9BTD8 480 aaKnown RBP11.94□□□□□ -0.5
SYNE1-230ENST00000495090 RBSNQ9H1K0 784 aa11.94□□□□□ -0.5
SYNE1-230ENST00000495090 FOXD4L1Q9NU39 408 aa11.94□□□□□ -0.5
SYNE1-230ENST00000495090 ABCC4O15439 1325 aa11.93□□□□□ -0.5
SYNE1-230ENST00000495090 ERCC6L2Q5T890 1561 aa11.93□□□□□ -0.5
SYNE1-230ENST00000495090 ASXL2Q76L83 1435 aa11.93□□□□□ -0.5
SYNE1-230ENST00000495090 SMAP1Q8IYB5 467 aaPredicted RBP11.93□□□□□ -0.5
SYNE1-230ENST00000495090 CCDC39Q9UFE4 941 aa11.93□□□□□ -0.5
SYNE1-230ENST00000495090 PRDM4Q9UKN5 801 aa11.93□□□□□ -0.5
SYNE1-230ENST00000495090 R3HCC1Q9Y3T6 440 aaKnown RBP11.93□□□□□ -0.5
SYNE1-230ENST00000495090 U2SURPO15042 1029 aaKnown RBP11.92□□□□□ -0.5
SYNE1-230ENST00000495090 A0A1W2PP64 1363 aa11.92□□□□□ -0.5
SYNE1-230ENST00000495090 UQCRHLA0A096LP55 91 aa11.92□□□□□ -0.5
SYNE1-230ENST00000495090 UQCRHP07919 91 aa11.92□□□□□ -0.5
SYNE1-230ENST00000495090 SASS6Q6UVJ0 657 aa11.92□□□□□ -0.5
SYNE1-230ENST00000495090 LRSAM1Q6UWE0 723 aa11.92□□□□□ -0.5
SYNE1-230ENST00000495090 MRPL50Q8N5N7 158 aaKnown RBP11.92□□□□□ -0.5
SYNE1-230ENST00000495090 FAM135BQ49AJ0 1406 aa11.91□□□□□ -0.5
SYNE1-230ENST00000495090 FCHSD2O94868 740 aa11.91□□□□□ -0.5
SYNE1-230ENST00000495090 PRIM1P49642 420 aaKnown RBP11.91□□□□□ -0.5
SYNE1-230ENST00000495090 SIRT2Q8IXJ6 389 aa11.91□□□□□ -0.5
SYNE1-230ENST00000495090 USP26Q9BXU7 913 aa11.91□□□□□ -0.5
SYNE1-230ENST00000495090 FRMPD1Q5SYB0 1578 aa11.9□□□□□ -0.5
SYNE1-230ENST00000495090 GSPT1P15170 499 aaKnown RBP11.9□□□□□ -0.5
SYNE1-230ENST00000495090 INTS3Q68E01 1043 aaKnown RBP11.9□□□□□ -0.5
SYNE1-230ENST00000495090 LRRC7Q96NW7 1537 aa11.9□□□□□ -0.5
SYNE1-230ENST00000495090 CLTCQ00610 1675 aaKnown RBP11.9□□□□□ -0.5
SYNE1-230ENST00000495090 ATAD2Q6PL18 1390 aa11.9□□□□□ -0.51
SYNE1-230ENST00000495090 ST18O60284 1047 aa11.9□□□□□ -0.51
SYNE1-230ENST00000495090 DIAPH1O60610 1272 aaKnown RBP11.9□□□□□ -0.51
SYNE1-230ENST00000495090 PLEKHG5O94827 1062 aa11.9□□□□□ -0.51
SYNE1-230ENST00000495090 MBD3O95983 291 aa11.9□□□□□ -0.51
SYNE1-230ENST00000495090 TTC22Q5TAA0 569 aa11.9□□□□□ -0.51
SYNE1-230ENST00000495090 PLEKHM2Q8IWE5 1019 aa11.9□□□□□ -0.51
SYNE1-230ENST00000495090 FAM13BQ9NYF5 915 aa11.9□□□□□ -0.51
SYNE1-230ENST00000495090 PIK3C2BO00750 1634 aa11.9□□□□□ -0.51
SYNE1-230ENST00000495090 NPATQ14207 1427 aa11.89□□□□□ -0.51
SYNE1-230ENST00000495090 KIDINS220Q9ULH0 1771 aa11.89□□□□□ -0.51
SYNE1-230ENST00000495090 VAMP4O75379 141 aa11.89□□□□□ -0.51
SYNE1-230ENST00000495090 RBM10P98175 930 aaKnown RBP11.89□□□□□ -0.51
SYNE1-230ENST00000495090 XPCQ01831 940 aaPredicted RBP11.89□□□□□ -0.51
SYNE1-230ENST00000495090 GPT2Q8TD30 523 aa11.89□□□□□ -0.51
SYNE1-230ENST00000495090 NCLP19338 710 aaKnown RBP11.88□□□□□ -0.51
SYNE1-230ENST00000495090 API5Q9BZZ5 524 aaKnown RBP11.88□□□□□ -0.51
SYNE1-230ENST00000495090 DCTPP1Q9H773 170 aa11.88□□□□□ -0.51
SYNE1-230ENST00000495090 CAMSAP1Q5T5Y3 1602 aa11.87□□□□□ -0.51
SYNE1-230ENST00000495090 HECW2Q9P2P5 1572 aa11.87□□□□□ -0.51
SYNE1-230ENST00000495090 TMEM132EQ6IEE7 984 aa11.87□□□□□ -0.51
SYNE1-230ENST00000495090 CASC1Q6TDU7 716 aa11.87□□□□□ -0.51
SYNE1-230ENST00000495090 IFT57Q9NWB7 429 aa11.87□□□□□ -0.51
SYNE1-230ENST00000495090 NEXMIFQ5QGS0 1516 aa11.87□□□□□ -0.51
SYNE1-230ENST00000495090 CD163L1Q9NR16 1453 aa11.86□□□□□ -0.51
SYNE1-230ENST00000495090 FYB1O15117 783 aa11.86□□□□□ -0.51
SYNE1-230ENST00000495090 PRPF40AO75400 957 aaKnown RBP11.86□□□□□ -0.51
SYNE1-230ENST00000495090 TERF2IPQ9NYB0 399 aa11.86□□□□□ -0.51
SYNE1-230ENST00000495090 PODXL2Q9NZ53 605 aa11.86□□□□□ -0.51
SYNE1-230ENST00000495090 ZDHHC9Q9Y397 364 aa11.86□□□□□ -0.51
SYNE1-230ENST00000495090 AK9Q5TCS8 1911 aa11.86□□□□□ -0.51
SYNE1-230ENST00000495090 KNDC1Q76NI1 1749 aa11.86□□□□□ -0.51
SYNE1-230ENST00000495090 ABCC3O15438 1527 aa11.86□□□□□ -0.51
SYNE1-230ENST00000495090 REC8O95072 547 aa11.86□□□□□ -0.51
SYNE1-230ENST00000495090 ZNF853P0CG23 659 aa11.86□□□□□ -0.51
SYNE1-230ENST00000495090 GNAI1P63096 354 aa11.86□□□□□ -0.51
SYNE1-230ENST00000495090 TMEM63CQ9P1W3 806 aa11.86□□□□□ -0.51
SYNE1-230ENST00000495090 KIF20BQ96Q89 1820 aa11.86□□□□□ -0.51
SYNE1-230ENST00000495090 VGFO15240 615 aaPredicted RBP11.85□□□□□ -0.51
SYNE1-230ENST00000495090 MCM2P49736 904 aa11.85□□□□□ -0.51
SYNE1-230ENST00000495090 PKP1Q13835 747 aa11.85□□□□□ -0.51
SYNE1-230ENST00000495090 NFE2L2Q16236 605 aa11.85□□□□□ -0.51
SYNE1-230ENST00000495090 UTP14CQ5TAP6 766 aaKnown RBP11.85□□□□□ -0.51
SYNE1-230ENST00000495090 KLHL34Q8N239 644 aa11.85□□□□□ -0.51
SYNE1-230ENST00000495090 PRIMPOLQ96LW4 560 aa11.85□□□□□ -0.51
SYNE1-230ENST00000495090 GGNBP2Q9H3C7 697 aa11.85□□□□□ -0.51
SYNE1-230ENST00000495090 C1orf115Q9H7X2 142 aa11.85□□□□□ -0.51
SYNE1-230ENST00000495090 CABP2Q9NPB3 220 aa11.85□□□□□ -0.51
SYNE1-230ENST00000495090 KIAA2012Q0VF49 1180 aa11.84□□□□□ -0.51
SYNE1-230ENST00000495090 MYRIPQ8NFW9 859 aa11.84□□□□□ -0.51
SYNE1-230ENST00000495090 SYAP1Q96A49 352 aaPredicted RBP11.84□□□□□ -0.51
SYNE1-230ENST00000495090 CCDC94Q9BW85 323 aaPredicted RBP11.84□□□□□ -0.51
SYNE1-230ENST00000495090 CHGAP10645 457 aaKnown RBP11.84□□□□□ -0.51
SYNE1-230ENST00000495090 GTF2F1P35269 517 aaKnown RBP eCLIP11.84□□□□□ -0.51
SYNE1-230ENST00000495090 SYCE3A1L190 88 aa11.83□□□□□ -0.52
SYNE1-230ENST00000495090 PHF14O94880 888 aa11.83□□□□□ -0.52
SYNE1-230ENST00000495090 HMGN5P82970 282 aaKnown RBP11.83□□□□□ -0.52
SYNE1-230ENST00000495090 UVSSAQ2YD98 709 aa11.83□□□□□ -0.52
SYNE1-230ENST00000495090 ZGPATQ8N5A5 531 aaKnown RBP11.83□□□□□ -0.52
SYNE1-230ENST00000495090 FAM184AQ8NB25 1140 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms