RNA–Protein interactions for RNA: ENST00000493853.1

RBM39-238, Transcript of RNA binding motif protein 39, human

TSL 4

Gene RBM39, Length 567 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-238	ENST00000493853	ANKRD13D	Q6ZTN6	518 aa		11.1	□□□□□ -0.63
RBM39-238	ENST00000493853	ANKRD30B	Q9BXX2	1392 aa		11.1	□□□□□ -0.63
RBM39-238	ENST00000493853	ROBO2	Q9HCK4	1378 aa		11.1	□□□□□ -0.63
RBM39-238	ENST00000493853	SETD5	Q9C0A6	1442 aa		11.09	□□□□□ -0.63
RBM39-238	ENST00000493853	PBX2	P40425	430 aa		11.09	□□□□□ -0.63
RBM39-238	ENST00000493853	CAMK2B	Q13554	666 aa		11.09	□□□□□ -0.63
RBM39-238	ENST00000493853	ESCO1	Q5FWF5	840 aa		11.09	□□□□□ -0.63
RBM39-238	ENST00000493853	ORAI2	Q96SN7	254 aa		11.09	□□□□□ -0.63
RBM39-238	ENST00000493853	AXIN2	Q9Y2T1	843 aa		11.09	□□□□□ -0.63
RBM39-238	ENST00000493853	NRXN3	Q9Y4C0	1643 aa		11.09	□□□□□ -0.63
RBM39-238	ENST00000493853	RXRB	P28702	533 aa		11.08	□□□□□ -0.64
RBM39-238	ENST00000493853	TMEM132E	Q6IEE7	984 aa		11.08	□□□□□ -0.64
RBM39-238	ENST00000493853	ZNF454	Q8N9F8	522 aa		11.08	□□□□□ -0.64
RBM39-238	ENST00000493853	C8orf37	Q96NL8	207 aa		11.08	□□□□□ -0.64
RBM39-238	ENST00000493853	COL16A1	Q07092	1604 aa	Predicted RBP	11.08	□□□□□ -0.64
RBM39-238	ENST00000493853	AHDC1	Q5TGY3	1603 aa	Predicted RBP	11.08	□□□□□ -0.64
RBM39-238	ENST00000493853	PTCH1	Q13635	1447 aa		11.08	□□□□□ -0.64
RBM39-238	ENST00000493853	KIF1B	O60333	1816 aa		11.07	□□□□□ -0.64
RBM39-238	ENST00000493853	XRN1	Q8IZH2	1706 aa	Known RBP	11.07	□□□□□ -0.64
RBM39-238	ENST00000493853	MMRN1	Q13201	1228 aa		11.07	□□□□□ -0.64
RBM39-238	ENST00000493853	WAPL	Q7Z5K2	1190 aa		11.07	□□□□□ -0.64
RBM39-238	ENST00000493853	NGLY1	Q96IV0	654 aa		11.07	□□□□□ -0.64
RBM39-238	ENST00000493853	TSHZ2	Q9NRE2	1034 aa		11.07	□□□□□ -0.64
RBM39-238	ENST00000493853	ASXL1	Q8IXJ9	1541 aa		11.07	□□□□□ -0.64
RBM39-238	ENST00000493853	C1orf167	Q5SNV9	1468 aa		11.06	□□□□□ -0.64
RBM39-238	ENST00000493853	NUTM2F	A1L443	756 aa		11.06	□□□□□ -0.64
RBM39-238	ENST00000493853	DPYSL4	O14531	572 aa		11.06	□□□□□ -0.64
RBM39-238	ENST00000493853	ADAMTS2	O95450	1211 aa		11.06	□□□□□ -0.64
RBM39-238	ENST00000493853	POTEE	Q6S8J3	1075 aa		11.06	□□□□□ -0.64
RBM39-238	ENST00000493853	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.06	□□□□□ -0.64
RBM39-238	ENST00000493853	AFF2	P51816	1311 aa		11.06	□□□□□ -0.64
RBM39-238	ENST00000493853	ARHGAP33	O14559	1287 aa		11.05	□□□□□ -0.64
RBM39-238	ENST00000493853	LSM11	P83369	360 aa	Known RBP eCLIP	11.05	□□□□□ -0.64
RBM39-238	ENST00000493853	QTRT2	Q9H974	415 aa	Known RBP	11.05	□□□□□ -0.64
RBM39-238	ENST00000493853	LRP6	O75581	1613 aa		11.05	□□□□□ -0.64
RBM39-238	ENST00000493853	NPHP3	Q7Z494	1330 aa		11.05	□□□□□ -0.64
RBM39-238	ENST00000493853	SPATA31E1	Q6ZUB1	1445 aa		11.04	□□□□□ -0.64
RBM39-238	ENST00000493853	FOXO3	O43524	673 aa		11.04	□□□□□ -0.64
RBM39-238	ENST00000493853	E2F4	Q16254	413 aa		11.04	□□□□□ -0.64
RBM39-238	ENST00000493853	SOS2	Q07890	1332 aa	Predicted RBP	11.04	□□□□□ -0.64
RBM39-238	ENST00000493853	LRPPRC	P42704	1394 aa	Known RBP	11.03	□□□□□ -0.64
RBM39-238	ENST00000493853	PNPLA6	Q8IY17	1366 aa		11.03	□□□□□ -0.64
RBM39-238	ENST00000493853	C14orf93	Q9H972	538 aa	Known RBP	11.03	□□□□□ -0.64
RBM39-238	ENST00000493853	DHX57	Q6P158	1386 aa	Known RBP	11.03	□□□□□ -0.64
RBM39-238	ENST00000493853	ABCC11	Q96J66	1382 aa		11.03	□□□□□ -0.64
RBM39-238	ENST00000493853	RAB3GAP2	Q9H2M9	1393 aa		11.03	□□□□□ -0.64
RBM39-238	ENST00000493853	FOSB	P53539	338 aa		11.02	□□□□□ -0.65
RBM39-238	ENST00000493853	XPC	Q01831	940 aa	Predicted RBP	11.02	□□□□□ -0.65
RBM39-238	ENST00000493853	CFAP70	Q5T0N1	1121 aa		11.02	□□□□□ -0.65
RBM39-238	ENST00000493853	POGK	Q9P215	609 aa		11.02	□□□□□ -0.65
RBM39-238	ENST00000493853	KDM2A	Q9Y2K7	1162 aa		11.02	□□□□□ -0.65
RBM39-238	ENST00000493853	PSEN2	P49810	448 aa		11.01	□□□□□ -0.65
RBM39-238	ENST00000493853	RBM6	P78332	1123 aa	Known RBP	11.01	□□□□□ -0.65
RBM39-238	ENST00000493853	SAFB2	Q14151	953 aa	Known RBP eCLIP	11.01	□□□□□ -0.65
RBM39-238	ENST00000493853	SIRT1	Q96EB6	747 aa		11.01	□□□□□ -0.65
RBM39-238	ENST00000493853	PRAG1	Q86YV5	1406 aa		11.01	□□□□□ -0.65
RBM39-238	ENST00000493853	KCNK17	Q96T54	332 aa		11	□□□□□ -0.65
RBM39-238	ENST00000493853	USP21	Q9UK80	565 aa		11	□□□□□ -0.65
RBM39-238	ENST00000493853	SHPRH	Q149N8	1683 aa		11	□□□□□ -0.65
RBM39-238	ENST00000493853	PIK3C2G	O75747	1445 aa		11	□□□□□ -0.65
RBM39-238	ENST00000493853	YTHDC2	Q9H6S0	1430 aa	Known RBP	11	□□□□□ -0.65
RBM39-238	ENST00000493853	HRC	P23327	699 aa		10.99	□□□□□ -0.65
RBM39-238	ENST00000493853	HAP1	P54257	671 aa	Predicted RBP	10.99	□□□□□ -0.65
RBM39-238	ENST00000493853	PSME1	Q06323	249 aa		10.99	□□□□□ -0.65
RBM39-238	ENST00000493853	DCAF11	Q8TEB1	546 aa		10.99	□□□□□ -0.65
RBM39-238	ENST00000493853	PRAM1	Q96QH2	718 aa		10.99	□□□□□ -0.65
RBM39-238	ENST00000493853	PLEKHH1	Q9ULM0	1364 aa		10.99	□□□□□ -0.65
RBM39-238	ENST00000493853	NALCN	Q8IZF0	1738 aa		10.98	□□□□□ -0.65
RBM39-238	ENST00000493853	PLCB2	Q00722	1185 aa		10.98	□□□□□ -0.65
RBM39-238	ENST00000493853	KRT28	Q7Z3Y7	464 aa		10.98	□□□□□ -0.65
RBM39-238	ENST00000493853	ZDHHC16	Q969W1	377 aa		10.98	□□□□□ -0.65
RBM39-238	ENST00000493853	STAC3	Q96MF2	364 aa		10.98	□□□□□ -0.65
RBM39-238	ENST00000493853	TRPC5	Q9UL62	973 aa	Predicted RBP	10.98	□□□□□ -0.65
RBM39-238	ENST00000493853	TECPR2	O15040	1411 aa		10.98	□□□□□ -0.65
RBM39-238	ENST00000493853	PPL	O60437	1756 aa		10.98	□□□□□ -0.65
RBM39-238	ENST00000493853	DMRTA1	Q5VZB9	504 aa		10.97	□□□□□ -0.65
RBM39-238	ENST00000493853	LMOD2	Q6P5Q4	547 aa		10.97	□□□□□ -0.65
RBM39-238	ENST00000493853	BCL2L12	Q9HB09	334 aa		10.97	□□□□□ -0.65
RBM39-238	ENST00000493853	NHSL1	Q5SYE7	1610 aa		10.96	□□□□□ -0.65
RBM39-238	ENST00000493853	PTPRE	P23469	700 aa		10.96	□□□□□ -0.65
RBM39-238	ENST00000493853	PTGER2	P43116	358 aa		10.96	□□□□□ -0.65
RBM39-238	ENST00000493853	FNBP4	Q8N3X1	1017 aa	Predicted RBP	10.96	□□□□□ -0.65
RBM39-238	ENST00000493853	TRAK1	Q9UPV9	953 aa		10.96	□□□□□ -0.65
RBM39-238	ENST00000493853	PCDHGA10	Q9Y5H3	936 aa		10.95	□□□□□ -0.66
RBM39-238	ENST00000493853	SPATA31A3	Q5VYP0	1347 aa		10.94	□□□□□ -0.66
RBM39-238	ENST00000493853	PHF14	O94880	888 aa		10.94	□□□□□ -0.66
RBM39-238	ENST00000493853	ADGRD1	Q6QNK2	874 aa		10.94	□□□□□ -0.66
RBM39-238	ENST00000493853	HIRIP3	Q9BW71	556 aa	Predicted RBP	10.94	□□□□□ -0.66
RBM39-238	ENST00000493853	ADAM33	Q9BZ11	813 aa		10.94	□□□□□ -0.66
RBM39-238	ENST00000493853	SETD1A	O15047	1707 aa	Known RBP	10.94	□□□□□ -0.66
RBM39-238	ENST00000493853	CDC42BPG	Q6DT37	1551 aa		10.94	□□□□□ -0.66
RBM39-238	ENST00000493853	CDK12	Q9NYV4	1490 aa	Predicted RBP	10.93	□□□□□ -0.66
RBM39-238	ENST00000493853	SPDYE16	A6NNV3	312 aa	Predicted RBP	10.93	□□□□□ -0.66
RBM39-238	ENST00000493853	TYW1B	Q6NUM6	668 aa		10.93	□□□□□ -0.66
RBM39-238	ENST00000493853	PMFBP1	Q8TBY8	1022 aa		10.93	□□□□□ -0.66
RBM39-238	ENST00000493853	RNF166	Q96A37	237 aa	Predicted RBP	10.93	□□□□□ -0.66
RBM39-238	ENST00000493853	MYOM2	P54296	1465 aa		10.93	□□□□□ -0.66
RBM39-238	ENST00000493853	MINK1	Q8N4C8	1332 aa	Predicted RBP	10.92	□□□□□ -0.66
RBM39-238	ENST00000493853	PDIA6	Q15084	440 aa		10.92	□□□□□ -0.66
RBM39-238	ENST00000493853	DDX12P	Q92771	950 aa		10.92	□□□□□ -0.66

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