RNA–Protein interactions for RNA: ENST00000493732.5

NPHP3-209, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,933 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-209ENST00000493732 BECN1Q14457 450 aa12.23□□□□□ -0.45
NPHP3-209ENST00000493732 EMILIN1Q9Y6C2 1016 aa12.23□□□□□ -0.45
NPHP3-209ENST00000493732 ROBO2Q9HCK4 1378 aa12.23□□□□□ -0.45
NPHP3-209ENST00000493732 ZNF853P0CG23 659 aa12.22□□□□□ -0.45
NPHP3-209ENST00000493732 DEKP35659 375 aaKnown RBP12.22□□□□□ -0.45
NPHP3-209ENST00000493732 CFAP44Q96MT7 982 aa12.22□□□□□ -0.45
NPHP3-209ENST00000493732 ZBTB40Q9NUA8 1239 aa12.22□□□□□ -0.45
NPHP3-209ENST00000493732 TNNQ9UQP3 1299 aa12.22□□□□□ -0.45
NPHP3-209ENST00000493732 TBX22Q9Y458 520 aa12.22□□□□□ -0.45
NPHP3-209ENST00000493732 TTC21BQ7Z4L5 1316 aa12.22□□□□□ -0.45
NPHP3-209ENST00000493732 SLIT1O75093 1534 aa12.22□□□□□ -0.45
NPHP3-209ENST00000493732 HMOX1P09601 288 aa12.21□□□□□ -0.45
NPHP3-209ENST00000493732 TTC21AQ8NDW8 1320 aa12.21□□□□□ -0.45
NPHP3-209ENST00000493732 SMC5Q8IY18 1101 aa12.21□□□□□ -0.46
NPHP3-209ENST00000493732 PHACTR3Q96KR7 559 aa12.21□□□□□ -0.46
NPHP3-209ENST00000493732 PRR36Q9H6K5 1346 aa12.21□□□□□ -0.46
NPHP3-209ENST00000493732 DIP2AQ14689 1571 aa12.2□□□□□ -0.46
NPHP3-209ENST00000493732 NRKQ7Z2Y5 1582 aa12.2□□□□□ -0.46
NPHP3-209ENST00000493732 TOPAZ1Q8N9V7 1692 aa12.2□□□□□ -0.46
NPHP3-209ENST00000493732 ARHGAP23Q9P227 1491 aa12.2□□□□□ -0.46
NPHP3-209ENST00000493732 VAMP4O75379 141 aa12.2□□□□□ -0.46
NPHP3-209ENST00000493732 THEMISQ8N1K5 641 aaPredicted RBP12.2□□□□□ -0.46
NPHP3-209ENST00000493732 TMEM57Q8N5G2 664 aa12.2□□□□□ -0.46
NPHP3-209ENST00000493732 LAS1LQ9Y4W2 734 aaKnown RBP12.2□□□□□ -0.46
NPHP3-209ENST00000493732 PIK3R4Q99570 1358 aa12.2□□□□□ -0.46
NPHP3-209ENST00000493732 PTCH1Q13635 1447 aa12.2□□□□□ -0.46
NPHP3-209ENST00000493732 ACEP12821 1306 aa12.19□□□□□ -0.46
NPHP3-209ENST00000493732 KIF24Q5T7B8 1368 aa12.19□□□□□ -0.46
NPHP3-209ENST00000493732 USP6P35125 1406 aa12.19□□□□□ -0.46
NPHP3-209ENST00000493732 API5Q9BZZ5 524 aaKnown RBP12.19□□□□□ -0.46
NPHP3-209ENST00000493732 USP31Q70CQ4 1352 aa12.19□□□□□ -0.46
NPHP3-209ENST00000493732 OVOS2A0A0J9YW53 1432 aa12.18□□□□□ -0.46
NPHP3-209ENST00000493732 OVOS2Q6IE36 1432 aa12.18□□□□□ -0.46
NPHP3-209ENST00000493732 EIF5BO60841 1220 aaKnown RBP12.18□□□□□ -0.46
NPHP3-209ENST00000493732 LTKP29376 864 aa12.18□□□□□ -0.46
NPHP3-209ENST00000493732 MRPL50Q8N5N7 158 aaKnown RBP12.18□□□□□ -0.46
NPHP3-209ENST00000493732 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.18□□□□□ -0.46
NPHP3-209ENST00000493732 FBLN1P23142 703 aa12.17□□□□□ -0.46
NPHP3-209ENST00000493732 RRS1Q15050 365 aaKnown RBP12.17□□□□□ -0.46
NPHP3-209ENST00000493732 TWISTNBQ3B726 338 aaPredicted RBP12.17□□□□□ -0.46
NPHP3-209ENST00000493732 GCC1Q96CN9 775 aa12.17□□□□□ -0.46
NPHP3-209ENST00000493732 MBIPQ9NS73 344 aa12.17□□□□□ -0.46
NPHP3-209ENST00000493732 ZRANB1Q9UGI0 708 aa12.17□□□□□ -0.46
NPHP3-209ENST00000493732 USP19O94966 1318 aa12.17□□□□□ -0.46
NPHP3-209ENST00000493732 AMOTL2Q9Y2J4 779 aa12.16□□□□□ -0.46
NPHP3-209ENST00000493732 NCKAP5LQ9HCH0 1330 aa12.15□□□□□ -0.46
NPHP3-209ENST00000493732 EIF4A2Q14240 407 aaKnown RBP12.15□□□□□ -0.46
NPHP3-209ENST00000493732 TBC1D32Q96NH3 1257 aa12.15□□□□□ -0.46
NPHP3-209ENST00000493732 NALCNQ8IZF0 1738 aa12.15□□□□□ -0.46
NPHP3-209ENST00000493732 SSH2Q76I76 1423 aa12.15□□□□□ -0.46
NPHP3-209ENST00000493732 KIAA0232Q92628 1395 aa12.15□□□□□ -0.46
NPHP3-209ENST00000493732 ABCC4O15439 1325 aa12.15□□□□□ -0.46
NPHP3-209ENST00000493732 ZBTB7BO15156 539 aaPredicted RBP12.15□□□□□ -0.46
NPHP3-209ENST00000493732 NUCB1Q02818 461 aa12.15□□□□□ -0.46
NPHP3-209ENST00000493732 ANKARQ7Z5J8 1434 aa12.14□□□□□ -0.47
NPHP3-209ENST00000493732 ARHGEF10O15013 1369 aa12.14□□□□□ -0.47
NPHP3-209ENST00000493732 PTPRUQ92729 1446 aa12.14□□□□□ -0.47
NPHP3-209ENST00000493732 SULT6B1Q6IMI4 303 aa12.13□□□□□ -0.47
NPHP3-209ENST00000493732 PLPPR3Q6T4P5 718 aa12.13□□□□□ -0.47
NPHP3-209ENST00000493732 SLC26A8Q96RN1 970 aa12.13□□□□□ -0.47
NPHP3-209ENST00000493732 DLG5Q8TDM6 1919 aa12.13□□□□□ -0.47
NPHP3-209ENST00000493732 NFKBIBQ15653 356 aa12.13□□□□□ -0.47
NPHP3-209ENST00000493732 SBNO1A3KN83 1393 aa12.12□□□□□ -0.47
NPHP3-209ENST00000493732 FLT4P35916 1363 aa12.12□□□□□ -0.47
NPHP3-209ENST00000493732 CHL1O00533 1208 aa12.12□□□□□ -0.47
NPHP3-209ENST00000493732 SEC24BO95487 1268 aa12.12□□□□□ -0.47
NPHP3-209ENST00000493732 CHD1LQ86WJ1 897 aa12.12□□□□□ -0.47
NPHP3-209ENST00000493732 NGDNQ8NEJ9 315 aaKnown RBP12.12□□□□□ -0.47
NPHP3-209ENST00000493732 THUMPD2Q9BTF0 503 aaKnown RBP12.12□□□□□ -0.47
NPHP3-209ENST00000493732 RIMS1Q86UR5 1692 aaKnown RBP12.12□□□□□ -0.47
NPHP3-209ENST00000493732 SLC4A3P48751 1232 aa12.11□□□□□ -0.47
NPHP3-209ENST00000493732 TSPYL6Q8N831 410 aa12.11□□□□□ -0.47
NPHP3-209ENST00000493732 FER1L4A9Z1Z3 1794 aa12.11□□□□□ -0.47
NPHP3-209ENST00000493732 PTPRCP08575 1304 aa12.11□□□□□ -0.47
NPHP3-209ENST00000493732 HTATSF1O43719 755 aaKnown RBP12.11□□□□□ -0.47
NPHP3-209ENST00000493732 CEBPAP49715 358 aaPredicted RBP12.11□□□□□ -0.47
NPHP3-209ENST00000493732 C8orf58Q8NAV2 365 aa12.11□□□□□ -0.47
NPHP3-209ENST00000493732 RGPD1P0DJD0 1748 aa12.1□□□□□ -0.47
NPHP3-209ENST00000493732 BMP2KLQ5H9B9 411 aa12.1□□□□□ -0.47
NPHP3-209ENST00000493732 RTF1Q92541 710 aaKnown RBP12.1□□□□□ -0.47
NPHP3-209ENST00000493732 INTS3Q68E01 1043 aaKnown RBP12.09□□□□□ -0.47
NPHP3-209ENST00000493732 GAS2L2Q8NHY3 880 aa12.09□□□□□ -0.47
NPHP3-209ENST00000493732 C22orf23Q9BZE7 217 aa12.09□□□□□ -0.47
NPHP3-209ENST00000493732 ELL2O00472 640 aaPredicted RBP12.09□□□□□ -0.47
NPHP3-209ENST00000493732 HSP90AB2PQ58FF8 381 aa12.09□□□□□ -0.47
NPHP3-209ENST00000493732 XRN1Q8IZH2 1706 aaKnown RBP12.09□□□□□ -0.47
NPHP3-209ENST00000493732 KDRP35968 1356 aa12.09□□□□□ -0.47
NPHP3-209ENST00000493732 SOS1Q07889 1333 aaPredicted RBP12.08□□□□□ -0.47
NPHP3-209ENST00000493732 FAM83GA6ND36 823 aa12.08□□□□□ -0.48
NPHP3-209ENST00000493732 AMPHP49418 695 aa12.08□□□□□ -0.48
NPHP3-209ENST00000493732 MAP3K19Q56UN5 1328 aa12.08□□□□□ -0.48
NPHP3-209ENST00000493732 AEBP1Q8IUX7 1158 aa12.07□□□□□ -0.48
NPHP3-209ENST00000493732 RPAP2Q8IXW5 612 aaPredicted RBP12.07□□□□□ -0.48
NPHP3-209ENST00000493732 NUTM2FA1L443 756 aa12.07□□□□□ -0.48
NPHP3-209ENST00000493732 ANKRD45Q5TZF3 282 aa12.07□□□□□ -0.48
NPHP3-209ENST00000493732 LNPKQ9C0E8 428 aa12.07□□□□□ -0.48
NPHP3-209ENST00000493732 PEAK1Q9H792 1746 aa12.07□□□□□ -0.48
NPHP3-209ENST00000493732 FMN2Q9NZ56 1722 aa12.06□□□□□ -0.48
NPHP3-209ENST00000493732 GSE1Q14687 1217 aa12.06□□□□□ -0.48
NPHP3-209ENST00000493732 BABAM1Q9NWV8 329 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms