RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 BOLA1Q9Y3E2 137 aa17.55■□□□□ 0.4
UPF3A-210ENST00000493727 PIK3C2GO75747 1445 aa17.55■□□□□ 0.4
UPF3A-210ENST00000493727 ABCC11Q96J66 1382 aa17.54■□□□□ 0.4
UPF3A-210ENST00000493727 PLEKHH1Q9ULM0 1364 aa17.54■□□□□ 0.4
UPF3A-210ENST00000493727 TMEM121BQ9BXQ6 578 aaPredicted RBP17.54■□□□□ 0.4
UPF3A-210ENST00000493727 ABCA3Q99758 1704 aa17.54■□□□□ 0.4
UPF3A-210ENST00000493727 RGPD8O14715 1765 aaPredicted RBP17.53■□□□□ 0.4
UPF3A-210ENST00000493727 SPATA31A3Q5VYP0 1347 aa17.53■□□□□ 0.4
UPF3A-210ENST00000493727 BLMP54132 1417 aaPredicted RBP17.53■□□□□ 0.4
UPF3A-210ENST00000493727 PLCH1Q4KWH8 1693 aa17.52■□□□□ 0.4
UPF3A-210ENST00000493727 WAPLQ7Z5K2 1190 aa17.52■□□□□ 0.4
UPF3A-210ENST00000493727 NWD2Q9ULI1 1742 aa17.52■□□□□ 0.39
UPF3A-210ENST00000493727 CLSPNQ9HAW4 1339 aa17.51■□□□□ 0.39
UPF3A-210ENST00000493727 UNC5CLQ8IV45 518 aa17.51■□□□□ 0.39
UPF3A-210ENST00000493727 MICALL2Q8IY33 904 aa17.51■□□□□ 0.39
UPF3A-210ENST00000493727 STK26Q9P289 416 aa17.51■□□□□ 0.39
UPF3A-210ENST00000493727 NUTM2FA1L443 756 aa17.5■□□□□ 0.39
UPF3A-210ENST00000493727 LHX8Q68G74 356 aa17.5■□□□□ 0.39
UPF3A-210ENST00000493727 YTHDC2Q9H6S0 1430 aaKnown RBP17.49■□□□□ 0.39
UPF3A-210ENST00000493727 SIRT1Q96EB6 747 aa17.49■□□□□ 0.39
UPF3A-210ENST00000493727 TNS3Q68CZ2 1445 aa17.48■□□□□ 0.39
UPF3A-210ENST00000493727 NRXN1Q9ULB1 1477 aa17.48■□□□□ 0.39
UPF3A-210ENST00000493727 LRP5O75197 1615 aa17.47■□□□□ 0.39
UPF3A-210ENST00000493727 TMEM132EQ6IEE7 984 aa17.47■□□□□ 0.39
UPF3A-210ENST00000493727 C14orf93Q9H972 538 aaKnown RBP17.47■□□□□ 0.39
UPF3A-210ENST00000493727 NRAPQ86VF7 1730 aa17.45■□□□□ 0.38
UPF3A-210ENST00000493727 G3V3G9 751 aa17.44■□□□□ 0.38
UPF3A-210ENST00000493727 NEUROD1Q13562 356 aa17.44■□□□□ 0.38
UPF3A-210ENST00000493727 KRT28Q7Z3Y7 464 aa17.44■□□□□ 0.38
UPF3A-210ENST00000493727 SBNO1A3KN83 1393 aa17.43■□□□□ 0.38
UPF3A-210ENST00000493727 VPS72Q15906 364 aa17.43■□□□□ 0.38
UPF3A-210ENST00000493727 DEFB132Q7Z7B7 95 aa17.43■□□□□ 0.38
UPF3A-210ENST00000493727 SIN3AQ96ST3 1273 aa17.43■□□□□ 0.38
UPF3A-210ENST00000493727 TRPM3Q9HCF6 1732 aaPredicted RBP17.42■□□□□ 0.38
UPF3A-210ENST00000493727 ONECUT3O60422 494 aaPredicted RBP17.42■□□□□ 0.38
UPF3A-210ENST00000493727 SEPT12Q8IYM1 358 aa17.42■□□□□ 0.38
UPF3A-210ENST00000493727 ADGRB2O60241 1585 aa17.41■□□□□ 0.38
UPF3A-210ENST00000493727 CFAP70Q5T0N1 1121 aa17.41■□□□□ 0.38
UPF3A-210ENST00000493727 DLC1Q96QB1 1528 aa17.41■□□□□ 0.38
UPF3A-210ENST00000493727 STAC3Q96MF2 364 aa17.4■□□□□ 0.38
UPF3A-210ENST00000493727 ALS2Q96Q42 1657 aa17.39■□□□□ 0.37
UPF3A-210ENST00000493727 CABLES1Q8TDN4 633 aa17.39■□□□□ 0.37
UPF3A-210ENST00000493727 ARHGEF10O15013 1369 aa17.39■□□□□ 0.37
UPF3A-210ENST00000493727 CRYBG1Q9Y4K1 1723 aa17.38■□□□□ 0.37
UPF3A-210ENST00000493727 MAMSTRQ6ZN01 415 aa17.38■□□□□ 0.37
UPF3A-210ENST00000493727 ANKARQ7Z5J8 1434 aa17.38■□□□□ 0.37
UPF3A-210ENST00000493727 PSME1Q06323 249 aa17.36■□□□□ 0.37
UPF3A-210ENST00000493727 KRT27Q7Z3Y8 459 aa17.36■□□□□ 0.37
UPF3A-210ENST00000493727 OTUD5Q96G74 571 aa17.36■□□□□ 0.37
UPF3A-210ENST00000493727 PRAM1Q96QH2 718 aa17.36■□□□□ 0.37
UPF3A-210ENST00000493727 POGKQ9P215 609 aa17.36■□□□□ 0.37
UPF3A-210ENST00000493727 TONSLQ96HA7 1378 aa17.36■□□□□ 0.37
UPF3A-210ENST00000493727 ADGRB1O14514 1584 aa17.36■□□□□ 0.37
UPF3A-210ENST00000493727 COL14A1Q05707 1796 aaKnown RBP17.35■□□□□ 0.37
UPF3A-210ENST00000493727 ZEB1P37275 1124 aaPredicted RBP17.35■□□□□ 0.37
UPF3A-210ENST00000493727 HAP1P54257 671 aaPredicted RBP17.35■□□□□ 0.37
UPF3A-210ENST00000493727 C3orf67Q6ZVT6 689 aa17.35■□□□□ 0.37
UPF3A-210ENST00000493727 RGPD1P0DJD0 1748 aa17.35■□□□□ 0.37
UPF3A-210ENST00000493727 SF3B2Q13435 895 aaKnown RBP17.34■□□□□ 0.37
UPF3A-210ENST00000493727 EIF3AQ14152 1382 aaKnown RBP17.34■□□□□ 0.37
UPF3A-210ENST00000493727 SCUBE2Q9NQ36 999 aa17.34■□□□□ 0.37
UPF3A-210ENST00000493727 TSHZ2Q9NRE2 1034 aa17.34■□□□□ 0.37
UPF3A-210ENST00000493727 THSD7AQ9UPZ6 1657 aa17.34■□□□□ 0.37
UPF3A-210ENST00000493727 TNS1Q9HBL0 1735 aaKnown RBP17.33■□□□□ 0.37
UPF3A-210ENST00000493727 FAM83GA6ND36 823 aa17.33■□□□□ 0.36
UPF3A-210ENST00000493727 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.33■□□□□ 0.36
UPF3A-210ENST00000493727 SAFB2Q14151 953 aaKnown RBP eCLIP17.32■□□□□ 0.36
UPF3A-210ENST00000493727 TMEM92Q6UXU6 159 aa17.32■□□□□ 0.36
UPF3A-210ENST00000493727 DCAF11Q8TEB1 546 aa17.31■□□□□ 0.36
UPF3A-210ENST00000493727 CCDC9Q9Y3X0 531 aaKnown RBP17.31■□□□□ 0.36
UPF3A-210ENST00000493727 KDM2AQ9Y2K7 1162 aa17.3■□□□□ 0.36
UPF3A-210ENST00000493727 TULP4Q9NRJ4 1543 aa17.3■□□□□ 0.36
UPF3A-210ENST00000493727 DISP2A7MBM2 1401 aa17.3■□□□□ 0.36
UPF3A-210ENST00000493727 LMOD2Q6P5Q4 547 aa17.29■□□□□ 0.36
UPF3A-210ENST00000493727 PMFBP1Q8TBY8 1022 aa17.29■□□□□ 0.36
UPF3A-210ENST00000493727 TRAK1Q9UPV9 953 aa17.29■□□□□ 0.36
UPF3A-210ENST00000493727 PRR36Q9H6K5 1346 aa17.28■□□□□ 0.36
UPF3A-210ENST00000493727 BAG6P46379 1132 aa17.28■□□□□ 0.36
UPF3A-210ENST00000493727 FAM98CQ17RN3 349 aaKnown RBP17.28■□□□□ 0.36
UPF3A-210ENST00000493727 BTG4Q9NY30 223 aa17.28■□□□□ 0.36
UPF3A-210ENST00000493727 TIMELESSQ9UNS1 1208 aa17.27■□□□□ 0.36
UPF3A-210ENST00000493727 SPATA31A5Q5VU36 1347 aa17.26■□□□□ 0.35
UPF3A-210ENST00000493727 SPATA31A7Q8IWB4 1347 aa17.26■□□□□ 0.35
UPF3A-210ENST00000493727 PSDA5PKW4 1024 aaPredicted RBP17.26■□□□□ 0.35
UPF3A-210ENST00000493727 ITSN1Q15811 1721 aa17.26■□□□□ 0.35
UPF3A-210ENST00000493727 ARHGEF28Q8N1W1 1705 aaKnown RBP17.26■□□□□ 0.35
UPF3A-210ENST00000493727 GPRASP1Q5JY77 1395 aa17.26■□□□□ 0.35
UPF3A-210ENST00000493727 PHRF1Q9P1Y6 1649 aaKnown RBP17.25■□□□□ 0.35
UPF3A-210ENST00000493727 KIAA1210Q9ULL0 1709 aa17.25■□□□□ 0.35
UPF3A-210ENST00000493727 KIF3CO14782 793 aa17.25■□□□□ 0.35
UPF3A-210ENST00000493727 L3MBTL2Q969R5 705 aa17.25■□□□□ 0.35
UPF3A-210ENST00000493727 MINK1Q8N4C8 1332 aaPredicted RBP17.24■□□□□ 0.35
UPF3A-210ENST00000493727 A0A0G2JS52 829 aa17.24■□□□□ 0.35
UPF3A-210ENST00000493727 MYT1Q01538 1121 aa17.24■□□□□ 0.35
UPF3A-210ENST00000493727 CRISPLD2Q9H0B8 497 aa17.24■□□□□ 0.35
UPF3A-210ENST00000493727 WASLO00401 505 aaPredicted RBP17.23■□□□□ 0.35
UPF3A-210ENST00000493727 EN1Q05925 392 aaPredicted RBP17.23■□□□□ 0.35
UPF3A-210ENST00000493727 HIRIP3Q9BW71 556 aaPredicted RBP17.23■□□□□ 0.35
UPF3A-210ENST00000493727 ATP7BP35670 1465 aa17.23■□□□□ 0.35
UPF3A-210ENST00000493727 SLAIN1Q8ND83 568 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms