RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 CLIP1P30622 1438 aa10.37□□□□□ -0.75
PRPF40A-210ENST00000489741 PLA2G2CQ5R387 149 aa10.37□□□□□ -0.75
PRPF40A-210ENST00000489741 RSBN1LQ6PCB5 846 aaPredicted RBP10.37□□□□□ -0.75
PRPF40A-210ENST00000489741 RETREG3Q86VR2 466 aa10.37□□□□□ -0.75
PRPF40A-210ENST00000489741 KDM4CQ9H3R0 1056 aa10.37□□□□□ -0.75
PRPF40A-210ENST00000489741 ARHGEF12Q9NZN5 1544 aa10.37□□□□□ -0.75
PRPF40A-210ENST00000489741 KIF14Q15058 1648 aa10.36□□□□□ -0.75
PRPF40A-210ENST00000489741 MMP16P51512 607 aa10.36□□□□□ -0.75
PRPF40A-210ENST00000489741 EMID1Q96A84 441 aaPredicted RBP10.36□□□□□ -0.75
PRPF40A-210ENST00000489741 MLH3Q9UHC1 1453 aa10.36□□□□□ -0.75
PRPF40A-210ENST00000489741 KDM5CP41229 1560 aa10.35□□□□□ -0.75
PRPF40A-210ENST00000489741 DXOO77932 396 aaKnown RBP10.35□□□□□ -0.75
PRPF40A-210ENST00000489741 CEBPAP49715 358 aaPredicted RBP10.35□□□□□ -0.75
PRPF40A-210ENST00000489741 LIAT1Q6ZQX7 453 aa10.35□□□□□ -0.75
PRPF40A-210ENST00000489741 RIC3Q7Z5B4 369 aa10.35□□□□□ -0.75
PRPF40A-210ENST00000489741 RIMS1Q86UR5 1692 aaKnown RBP10.34□□□□□ -0.75
PRPF40A-210ENST00000489741 TRAPPC8Q9Y2L5 1435 aa10.34□□□□□ -0.75
PRPF40A-210ENST00000489741 ARHGAP5Q13017 1502 aa10.34□□□□□ -0.75
PRPF40A-210ENST00000489741 SPTLC1O15269 473 aa10.34□□□□□ -0.75
PRPF40A-210ENST00000489741 JUNDP17535 347 aa10.34□□□□□ -0.75
PRPF40A-210ENST00000489741 GJA5P36382 358 aa10.34□□□□□ -0.75
PRPF40A-210ENST00000489741 MTMR2Q13614 643 aa10.34□□□□□ -0.75
PRPF40A-210ENST00000489741 CSPP1Q1MSJ5 1256 aa10.33□□□□□ -0.76
PRPF40A-210ENST00000489741 MYSM1Q5VVJ2 828 aa10.33□□□□□ -0.76
PRPF40A-210ENST00000489741 SPRYD7Q5W111 196 aa10.33□□□□□ -0.76
PRPF40A-210ENST00000489741 CCDC18Q5T9S5 1454 aa10.33□□□□□ -0.76
PRPF40A-210ENST00000489741 SPDYE5A6NIY4 337 aa10.32□□□□□ -0.76
PRPF40A-210ENST00000489741 ZBTB24O43167 697 aaPredicted RBP10.32□□□□□ -0.76
PRPF40A-210ENST00000489741 CCDC24Q8N4L8 307 aa10.32□□□□□ -0.76
PRPF40A-210ENST00000489741 RSPH6AQ9H0K4 717 aa10.32□□□□□ -0.76
PRPF40A-210ENST00000489741 REREQ9P2R6 1566 aa10.31□□□□□ -0.76
PRPF40A-210ENST00000489741 MYO5CQ9NQX4 1742 aa10.31□□□□□ -0.76
PRPF40A-210ENST00000489741 NEUROD2Q15784 382 aa10.31□□□□□ -0.76
PRPF40A-210ENST00000489741 ZNF697Q5TEC3 545 aa10.31□□□□□ -0.76
PRPF40A-210ENST00000489741 PCDHB15Q9Y5E8 787 aa10.31□□□□□ -0.76
PRPF40A-210ENST00000489741 AGLP35573 1532 aa10.31□□□□□ -0.76
PRPF40A-210ENST00000489741 FYCO1Q9BQS8 1478 aa10.3□□□□□ -0.76
PRPF40A-210ENST00000489741 LRRIQ1Q96JM4 1722 aa10.3□□□□□ -0.76
PRPF40A-210ENST00000489741 GFRA3O60609 400 aa10.3□□□□□ -0.76
PRPF40A-210ENST00000489741 RPIAP49247 311 aa10.3□□□□□ -0.76
PRPF40A-210ENST00000489741 ZNF598Q86UK7 904 aaKnown RBP10.3□□□□□ -0.76
PRPF40A-210ENST00000489741 PRR7Q8TB68 274 aa10.3□□□□□ -0.76
PRPF40A-210ENST00000489741 DDRGK1Q96HY6 314 aa10.3□□□□□ -0.76
PRPF40A-210ENST00000489741 ZBTB3Q9H5J0 574 aa10.3□□□□□ -0.76
PRPF40A-210ENST00000489741 LIMD1Q9UGP4 676 aa10.3□□□□□ -0.76
PRPF40A-210ENST00000489741 PDZRN3Q9UPQ7 1066 aa10.3□□□□□ -0.76
PRPF40A-210ENST00000489741 DIP2CQ9Y2E4 1556 aa10.3□□□□□ -0.76
PRPF40A-210ENST00000489741 ABCC1P33527 1531 aa10.29□□□□□ -0.76
PRPF40A-210ENST00000489741 GPATCH8Q9UKJ3 1502 aaKnown RBP10.29□□□□□ -0.76
PRPF40A-210ENST00000489741 FAM117AQ9C073 453 aa10.29□□□□□ -0.76
PRPF40A-210ENST00000489741 CDC42BPBQ9Y5S2 1711 aa10.29□□□□□ -0.76
PRPF40A-210ENST00000489741 KIAA1107Q9UPP5 1409 aa10.28□□□□□ -0.76
PRPF40A-210ENST00000489741 CD2BP2O95400 341 aaKnown RBP10.28□□□□□ -0.76
PRPF40A-210ENST00000489741 CLK2P49760 499 aaKnown RBP10.28□□□□□ -0.76
PRPF40A-210ENST00000489741 HNRNPMP52272 730 aaKnown RBP eCLIP10.28□□□□□ -0.766e-7■■■■□ 23.7
PRPF40A-210ENST00000489741 LAPTM4AQ15012 233 aa10.28□□□□□ -0.76
PRPF40A-210ENST00000489741 CABLES1Q8TDN4 633 aa10.28□□□□□ -0.76
PRPF40A-210ENST00000489741 POLR3EQ9NVU0 708 aa10.28□□□□□ -0.76
PRPF40A-210ENST00000489741 NUTM2BA6NNL0 878 aaPredicted RBP10.27□□□□□ -0.77
PRPF40A-210ENST00000489741 NUTM2EB1AL46 878 aaPredicted RBP10.27□□□□□ -0.77
PRPF40A-210ENST00000489741 HRCP23327 699 aa10.27□□□□□ -0.77
PRPF40A-210ENST00000489741 NUTM2DQ5VT03 806 aaPredicted RBP10.27□□□□□ -0.77
PRPF40A-210ENST00000489741 PRPF38BQ5VTL8 546 aaKnown RBP10.27□□□□□ -0.77
PRPF40A-210ENST00000489741 NUTM2AQ8IVF1 878 aaPredicted RBP10.27□□□□□ -0.77
PRPF40A-210ENST00000489741 NUDT12Q9BQG2 462 aa10.27□□□□□ -0.77
PRPF40A-210ENST00000489741 FER1L4A9Z1Z3 1794 aa10.26□□□□□ -0.77
PRPF40A-210ENST00000489741 PREX2Q70Z35 1606 aa10.26□□□□□ -0.77
PRPF40A-210ENST00000489741 CFDP1Q9UEE9 299 aaPredicted RBP10.26□□□□□ -0.77
PRPF40A-210ENST00000489741 ZNF777Q9ULD5 760 aaPredicted RBP10.26□□□□□ -0.77
PRPF40A-210ENST00000489741 SPAG9O60271 1321 aaKnown RBP10.26□□□□□ -0.77
PRPF40A-210ENST00000489741 ABCA6Q8N139 1617 aa10.25□□□□□ -0.77
PRPF40A-210ENST00000489741 UHRF1BP1Q6BDS2 1440 aa10.25□□□□□ -0.77
PRPF40A-210ENST00000489741 NRG2O14511 850 aaPredicted RBP10.25□□□□□ -0.77
PRPF40A-210ENST00000489741 QPCTQ16769 361 aa10.25□□□□□ -0.77
PRPF40A-210ENST00000489741 SETD1BQ9UPS6 1966 aaKnown RBP10.25□□□□□ -0.77
PRPF40A-210ENST00000489741 SAMD9LQ8IVG5 1584 aa10.24□□□□□ -0.77
PRPF40A-210ENST00000489741 CFAP99D6REC4 459 aa10.24□□□□□ -0.77
PRPF40A-210ENST00000489741 TNFRSF10AO00220 468 aa10.24□□□□□ -0.77
PRPF40A-210ENST00000489741 CCNYL3P0C7X3 344 aa10.24□□□□□ -0.77
PRPF40A-210ENST00000489741 FOXC1Q12948 553 aa10.24□□□□□ -0.77
PRPF40A-210ENST00000489741 TRIM32Q13049 653 aa10.24□□□□□ -0.77
PRPF40A-210ENST00000489741 PTPRNQ16849 979 aa10.24□□□□□ -0.77
PRPF40A-210ENST00000489741 TUSC1Q2TAM9 212 aa10.24□□□□□ -0.77
PRPF40A-210ENST00000489741 Q6ZNB5 142 aa10.24□□□□□ -0.77
PRPF40A-210ENST00000489741 TSC1Q92574 1164 aa10.24□□□□□ -0.77
PRPF40A-210ENST00000489741 KIDINS220Q9ULH0 1771 aa10.24□□□□□ -0.77
PRPF40A-210ENST00000489741 CNTLNQ9NXG0 1405 aa10.24□□□□□ -0.77
PRPF40A-210ENST00000489741 SH3D19Q5HYK7 790 aa10.23□□□□□ -0.77
PRPF40A-210ENST00000489741 DESI1Q6ICB0 168 aa10.23□□□□□ -0.77
PRPF40A-210ENST00000489741 TRIM67Q6ZTA4 783 aa10.23□□□□□ -0.77
PRPF40A-210ENST00000489741 ESF1Q9H501 851 aaKnown RBP10.23□□□□□ -0.77
PRPF40A-210ENST00000489741 ZNF644Q9H582 1327 aaPredicted RBP10.23□□□□□ -0.77
PRPF40A-210ENST00000489741 ZMYM3Q14202 1370 aa10.23□□□□□ -0.77
PRPF40A-210ENST00000489741 CCNB3Q8WWL7 1395 aa10.23□□□□□ -0.77
PRPF40A-210ENST00000489741 PTPRTO14522 1441 aa10.23□□□□□ -0.77
PRPF40A-210ENST00000489741 PLEKHG3A1L390 1219 aa10.22□□□□□ -0.77
PRPF40A-210ENST00000489741 MTUS2Q5JR59 1369 aa10.22□□□□□ -0.77
PRPF40A-210ENST00000489741 PLEKHH2Q8IVE3 1493 aa10.22□□□□□ -0.77
PRPF40A-210ENST00000489741 MBD5Q9P267 1494 aa10.22□□□□□ -0.77
PRPF40A-210ENST00000489741 ITSN2Q9NZM3 1697 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms