RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	LMOD2	Q6P5Q4	547 aa		12.83	□□□□□ -0.36
USP4-213	ENST00000488520	YTHDC2	Q9H6S0	1430 aa	Known RBP	12.82	□□□□□ -0.36
USP4-213	ENST00000488520	SF3B2	Q13435	895 aa	Known RBP	12.82	□□□□□ -0.36
USP4-213	ENST00000488520	SEPT12	Q8IYM1	358 aa		12.82	□□□□□ -0.36
USP4-213	ENST00000488520	MS4A4A	Q96JQ5	239 aa		12.82	□□□□□ -0.36
USP4-213	ENST00000488520	ABCC11	Q96J66	1382 aa		12.81	□□□□□ -0.36
USP4-213	ENST00000488520	SPATA31E1	Q6ZUB1	1445 aa		12.81	□□□□□ -0.36
USP4-213	ENST00000488520	SAFB2	Q14151	953 aa	Known RBP eCLIP	12.81	□□□□□ -0.36
USP4-213	ENST00000488520	C3orf67	Q6ZVT6	689 aa		12.81	□□□□□ -0.36
USP4-213	ENST00000488520	MFRP	Q9BY79	579 aa		12.81	□□□□□ -0.36
USP4-213	ENST00000488520	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	12.81	□□□□□ -0.36
USP4-213	ENST00000488520	BOLA1	Q9Y3E2	137 aa		12.81	□□□□□ -0.36
USP4-213	ENST00000488520	RGPD1	P0DJD0	1748 aa		12.81	□□□□□ -0.36
USP4-213	ENST00000488520	TRPM3	Q9HCF6	1732 aa	Predicted RBP	12.81	□□□□□ -0.36
USP4-213	ENST00000488520	ACIN1	Q9UKV3	1341 aa	Known RBP	12.81	□□□□□ -0.36
USP4-213	ENST00000488520	ANKRD30B	Q9BXX2	1392 aa		12.81	□□□□□ -0.36
USP4-213	ENST00000488520	LRP5	O75197	1615 aa		12.8	□□□□□ -0.36
USP4-213	ENST00000488520	PIK3C2G	O75747	1445 aa		12.8	□□□□□ -0.36
USP4-213	ENST00000488520	TNS3	Q68CZ2	1445 aa		12.8	□□□□□ -0.36
USP4-213	ENST00000488520	FBXO22	Q8NEZ5	403 aa		12.8	□□□□□ -0.36
USP4-213	ENST00000488520	RTN4	Q9NQC3	1192 aa	Known RBP	12.8	□□□□□ -0.36
USP4-213	ENST00000488520		A0A0G2JS52	829 aa		12.79	□□□□□ -0.36
USP4-213	ENST00000488520	MYT1	Q01538	1121 aa		12.79	□□□□□ -0.36
USP4-213	ENST00000488520	PSME1	Q06323	249 aa		12.79	□□□□□ -0.36
USP4-213	ENST00000488520	SLAIN1	Q8ND83	568 aa		12.79	□□□□□ -0.36
USP4-213	ENST00000488520	ALS2	Q96Q42	1657 aa		12.79	□□□□□ -0.36
USP4-213	ENST00000488520	PSD	A5PKW4	1024 aa	Predicted RBP	12.78	□□□□□ -0.36
USP4-213	ENST00000488520	VPS72	Q15906	364 aa		12.78	□□□□□ -0.36
USP4-213	ENST00000488520	KRT27	Q7Z3Y8	459 aa		12.78	□□□□□ -0.36
USP4-213	ENST00000488520	MPHOSPH9	Q99550	1183 aa		12.78	□□□□□ -0.36
USP4-213	ENST00000488520	PCGF6	Q9BYE7	350 aa		12.78	□□□□□ -0.36
USP4-213	ENST00000488520	NRXN1	Q9ULB1	1477 aa		12.78	□□□□□ -0.36
USP4-213	ENST00000488520	CRYBG1	Q9Y4K1	1723 aa		12.77	□□□□□ -0.36
USP4-213	ENST00000488520	COL14A1	Q05707	1796 aa	Known RBP	12.77	□□□□□ -0.36
USP4-213	ENST00000488520	PMFBP1	Q8TBY8	1022 aa		12.77	□□□□□ -0.37
USP4-213	ENST00000488520	TNS1	Q9HBL0	1735 aa	Known RBP	12.76	□□□□□ -0.37
USP4-213	ENST00000488520	FAM83G	A6ND36	823 aa		12.76	□□□□□ -0.37
USP4-213	ENST00000488520	CFAP70	Q5T0N1	1121 aa		12.76	□□□□□ -0.37
USP4-213	ENST00000488520	FAM98C	Q17RN3	349 aa	Known RBP	12.75	□□□□□ -0.37
USP4-213	ENST00000488520	DHX57	Q6P158	1386 aa	Known RBP	12.75	□□□□□ -0.37
USP4-213	ENST00000488520	PRAM1	Q96QH2	718 aa		12.75	□□□□□ -0.37
USP4-213	ENST00000488520	ITSN1	Q15811	1721 aa		12.74	□□□□□ -0.37
USP4-213	ENST00000488520	SBNO1	A3KN83	1393 aa		12.74	□□□□□ -0.37
USP4-213	ENST00000488520	ONECUT3	O60422	494 aa	Predicted RBP	12.74	□□□□□ -0.37
USP4-213	ENST00000488520	FAM182B	Q5T319	152 aa		12.74	□□□□□ -0.37
USP4-213	ENST00000488520	SIRT1	Q96EB6	747 aa		12.74	□□□□□ -0.37
USP4-213	ENST00000488520	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	12.74	□□□□□ -0.37
USP4-213	ENST00000488520	C14orf93	Q9H972	538 aa	Known RBP	12.74	□□□□□ -0.37
USP4-213	ENST00000488520	ARHGEF10	O15013	1369 aa		12.73	□□□□□ -0.37
USP4-213	ENST00000488520	BAG6	P46379	1132 aa		12.73	□□□□□ -0.37
USP4-213	ENST00000488520	BTG4	Q9NY30	223 aa		12.73	□□□□□ -0.37
USP4-213	ENST00000488520	POGK	Q9P215	609 aa		12.73	□□□□□ -0.37
USP4-213	ENST00000488520	MICALL2	Q8IY33	904 aa		12.72	□□□□□ -0.37
USP4-213	ENST00000488520	HIRIP3	Q9BW71	556 aa	Predicted RBP	12.72	□□□□□ -0.37
USP4-213	ENST00000488520	ADGRB2	O60241	1585 aa		12.72	□□□□□ -0.37
USP4-213	ENST00000488520	HRC	P23327	699 aa		12.71	□□□□□ -0.37
USP4-213	ENST00000488520	EN1	Q05925	392 aa	Predicted RBP	12.71	□□□□□ -0.37
USP4-213	ENST00000488520	THSD7A	Q9UPZ6	1657 aa		12.7	□□□□□ -0.38
USP4-213	ENST00000488520	PHRF1	Q9P1Y6	1649 aa	Known RBP	12.7	□□□□□ -0.38
USP4-213	ENST00000488520	TRAK1	Q9UPV9	953 aa		12.7	□□□□□ -0.38
USP4-213	ENST00000488520	DLC1	Q96QB1	1528 aa		12.7	□□□□□ -0.38
USP4-213	ENST00000488520	ARHGEF28	Q8N1W1	1705 aa	Known RBP	12.7	□□□□□ -0.38
USP4-213	ENST00000488520	MINK1	Q8N4C8	1332 aa	Predicted RBP	12.69	□□□□□ -0.38
USP4-213	ENST00000488520	ANKAR	Q7Z5J8	1434 aa		12.69	□□□□□ -0.38
USP4-213	ENST00000488520	GPRASP1	Q5JY77	1395 aa		12.68	□□□□□ -0.38
USP4-213	ENST00000488520	R3HDM1	Q15032	1099 aa	Known RBP	12.67	□□□□□ -0.38
USP4-213	ENST00000488520	ADGRB1	O14514	1584 aa		12.67	□□□□□ -0.38
USP4-213	ENST00000488520	TULP4	Q9NRJ4	1543 aa		12.67	□□□□□ -0.38
USP4-213	ENST00000488520	PRR36	Q9H6K5	1346 aa		12.66	□□□□□ -0.38
USP4-213	ENST00000488520	NUP188	Q5SRE5	1749 aa		12.66	□□□□□ -0.38
USP4-213	ENST00000488520	NKX1-1	Q15270	411 aa	Predicted RBP	12.66	□□□□□ -0.38
USP4-213	ENST00000488520	NGDN	Q8NEJ9	315 aa	Known RBP	12.66	□□□□□ -0.38
USP4-213	ENST00000488520	KDM2A	Q9Y2K7	1162 aa		12.66	□□□□□ -0.38
USP4-213	ENST00000488520	RREB1	Q92766	1687 aa		12.66	□□□□□ -0.38
USP4-213	ENST00000488520	RAB3GAP2	Q9H2M9	1393 aa		12.66	□□□□□ -0.38
USP4-213	ENST00000488520	SPATA31A5	Q5VU36	1347 aa		12.65	□□□□□ -0.38
USP4-213	ENST00000488520	SPATA31A7	Q8IWB4	1347 aa		12.65	□□□□□ -0.38
USP4-213	ENST00000488520	SBF2	Q86WG5	1849 aa		12.65	□□□□□ -0.38
USP4-213	ENST00000488520	EZH2	Q15910	746 aa	Known RBP	12.65	□□□□□ -0.38
USP4-213	ENST00000488520	CHRNA2	Q15822	529 aa		12.64	□□□□□ -0.39
USP4-213	ENST00000488520	PRDM11	Q9NQV5	511 aa		12.64	□□□□□ -0.39
USP4-213	ENST00000488520	WASL	O00401	505 aa	Predicted RBP	12.63	□□□□□ -0.39
USP4-213	ENST00000488520	TRIM37	O94972	964 aa		12.63	□□□□□ -0.39
USP4-213	ENST00000488520	NUTM2G	Q5VZR2	741 aa		12.63	□□□□□ -0.39
USP4-213	ENST00000488520	STRN4	Q9NRL3	753 aa		12.63	□□□□□ -0.39
USP4-213	ENST00000488520	RYDEN	Q9NUL5	291 aa	Known RBP	12.63	□□□□□ -0.39
USP4-213	ENST00000488520	KAT6B	Q8WYB5	2073 aa		12.62	□□□□□ -0.39
USP4-213	ENST00000488520	TOPAZ1	Q8N9V7	1692 aa		12.62	□□□□□ -0.39
USP4-213	ENST00000488520	EIF3A	Q14152	1382 aa	Known RBP	12.62	□□□□□ -0.39
USP4-213	ENST00000488520	KIAA0232	Q92628	1395 aa		12.62	□□□□□ -0.39
USP4-213	ENST00000488520	ZC3H6	P61129	1189 aa	Known RBP	12.62	□□□□□ -0.39
USP4-213	ENST00000488520	USP35	Q9P2H5	1018 aa		12.62	□□□□□ -0.39
USP4-213	ENST00000488520	RGPD5	Q99666	1765 aa		12.61	□□□□□ -0.39
USP4-213	ENST00000488520	DCAF11	Q8TEB1	546 aa		12.61	□□□□□ -0.39
USP4-213	ENST00000488520	SPATA31A1	Q5TZJ5	1347 aa		12.61	□□□□□ -0.39
USP4-213	ENST00000488520	SNPH	O15079	494 aa		12.6	□□□□□ -0.39
USP4-213	ENST00000488520	PPP1R37	O75864	691 aa		12.6	□□□□□ -0.39
USP4-213	ENST00000488520	FAM163A	Q96GL9	167 aa	Predicted RBP	12.6	□□□□□ -0.39
USP4-213	ENST00000488520	DISP2	A7MBM2	1401 aa		12.6	□□□□□ -0.39
USP4-213	ENST00000488520	APBA3	O96018	575 aa		12.59	□□□□□ -0.39

Retrieved 100 of 20,778 RNA–protein pairs in 51 ms