RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 C11orf95C9JLR9 678 aaPredicted RBP19.57■□□□□ 0.72
COL7A1-210ENST00000487017 FYB1O15117 783 aa19.57■□□□□ 0.72
COL7A1-210ENST00000487017 KDM4AO75164 1064 aa19.57■□□□□ 0.72
COL7A1-210ENST00000487017 RPAP2Q8IXW5 612 aaPredicted RBP19.57■□□□□ 0.72
COL7A1-210ENST00000487017 CDR1P51861 262 aa19.57■□□□□ 0.72
COL7A1-210ENST00000487017 RBM10P98175 930 aaKnown RBP19.57■□□□□ 0.72
COL7A1-210ENST00000487017 NOM1Q5C9Z4 860 aaKnown RBP19.57■□□□□ 0.72
COL7A1-210ENST00000487017 CCDC43Q96MW1 224 aaKnown RBP19.56■□□□□ 0.72
COL7A1-210ENST00000487017 TMPOP42166 694 aaKnown RBP19.56■□□□□ 0.72
COL7A1-210ENST00000487017 MRC2Q9UBG0 1479 aa19.56■□□□□ 0.72
COL7A1-210ENST00000487017 HMGXB3Q12766 1538 aa19.56■□□□□ 0.72
COL7A1-210ENST00000487017 RTEL1-TNFRSF6BF6WH68 1400 aa19.56■□□□□ 0.72
COL7A1-210ENST00000487017 ERCC4Q92889 916 aaPredicted RBP19.56■□□□□ 0.72
COL7A1-210ENST00000487017 SLC52A1Q9NWF4 448 aa19.56■□□□□ 0.72
COL7A1-210ENST00000487017 MAP4K4O95819 1239 aaPredicted RBP19.55■□□□□ 0.72
COL7A1-210ENST00000487017 NESP48681 1621 aa19.55■□□□□ 0.72
COL7A1-210ENST00000487017 PTPN23Q9H3S7 1636 aa19.55■□□□□ 0.72
COL7A1-210ENST00000487017 DHX8Q14562 1220 aaKnown RBP19.55■□□□□ 0.72
COL7A1-210ENST00000487017 FILIP1LQ4L180 1135 aa19.55■□□□□ 0.72
COL7A1-210ENST00000487017 ESPNB1AK53 854 aa19.54■□□□□ 0.72
COL7A1-210ENST00000487017 STK3Q13188 491 aa19.54■□□□□ 0.72
COL7A1-210ENST00000487017 CAGE1Q8TC20 777 aa19.54■□□□□ 0.72
COL7A1-210ENST00000487017 LARP1BQ659C4 914 aaKnown RBP19.54■□□□□ 0.72
COL7A1-210ENST00000487017 NKTRP30414 1462 aaKnown RBP19.54■□□□□ 0.72
COL7A1-210ENST00000487017 NFE2L2Q16236 605 aa19.54■□□□□ 0.72
COL7A1-210ENST00000487017 RBM33Q96EV2 1170 aaKnown RBP19.54■□□□□ 0.72
COL7A1-210ENST00000487017 JMYQ8N9B5 988 aa19.54■□□□□ 0.72
COL7A1-210ENST00000487017 SMARCE1Q969G3 411 aa19.54■□□□□ 0.72
COL7A1-210ENST00000487017 C20orf194Q5TEA3 1177 aa19.53■□□□□ 0.72
COL7A1-210ENST00000487017 MTMR7Q9Y216 660 aa19.53■□□□□ 0.72
COL7A1-210ENST00000487017 CCDC158Q5M9N0 1113 aa19.53■□□□□ 0.72
COL7A1-210ENST00000487017 ZSCAN31Q96LW9 406 aaPredicted RBP19.53■□□□□ 0.72
COL7A1-210ENST00000487017 PRKCSHP14314 528 aaPredicted RBP19.53■□□□□ 0.72
COL7A1-210ENST00000487017 TTC39AQ5SRH9 613 aa19.53■□□□□ 0.72
COL7A1-210ENST00000487017 ATP2B1P20020 1258 aa19.52■□□□□ 0.72
COL7A1-210ENST00000487017 MAP3K1Q13233 1512 aa19.52■□□□□ 0.72
COL7A1-210ENST00000487017 KRI1Q8N9T8 703 aaKnown RBP19.52■□□□□ 0.72
COL7A1-210ENST00000487017 TTLL5Q6EMB2 1281 aa19.52■□□□□ 0.72
COL7A1-210ENST00000487017 PDRG1Q9NUG6 133 aa19.52■□□□□ 0.72
COL7A1-210ENST00000487017 DNMBPQ6XZF7 1577 aa19.52■□□□□ 0.72
COL7A1-210ENST00000487017 CT47A1Q5JQC4 288 aaPredicted RBP19.52■□□□□ 0.72
COL7A1-210ENST00000487017 RARSP54136 660 aaKnown RBP19.52■□□□□ 0.71
COL7A1-210ENST00000487017 ESCO1Q5FWF5 840 aa19.51■□□□□ 0.71
COL7A1-210ENST00000487017 CWC15Q9P013 229 aaKnown RBP19.51■□□□□ 0.71
COL7A1-210ENST00000487017 KIF6Q6ZMV9 814 aa19.51■□□□□ 0.71
COL7A1-210ENST00000487017 NCOA1Q15788 1441 aa19.51■□□□□ 0.71
COL7A1-210ENST00000487017 KLHL34Q8N239 644 aa19.51■□□□□ 0.71
COL7A1-210ENST00000487017 SIL1Q9H173 461 aa19.51■□□□□ 0.71
COL7A1-210ENST00000487017 CCDC141Q6ZP82 1450 aa19.51■□□□□ 0.71
COL7A1-210ENST00000487017 SNAPC4Q5SXM2 1469 aa19.51■□□□□ 0.71
COL7A1-210ENST00000487017 EPS15P42566 896 aa19.51■□□□□ 0.71
COL7A1-210ENST00000487017 CCDC66A2RUB6 948 aa19.5■□□□□ 0.71
COL7A1-210ENST00000487017 ME1P48163 572 aa19.5■□□□□ 0.71
COL7A1-210ENST00000487017 BLOC1S2Q6QNY1 142 aa19.5■□□□□ 0.71
COL7A1-210ENST00000487017 SRGAP3O43295 1099 aa19.5■□□□□ 0.71
COL7A1-210ENST00000487017 OFD1O75665 1012 aa19.5■□□□□ 0.71
COL7A1-210ENST00000487017 RRP12Q5JTH9 1297 aaKnown RBP19.5■□□□□ 0.71
COL7A1-210ENST00000487017 PIP4K2AP48426 406 aaPredicted RBP19.5■□□□□ 0.71
COL7A1-210ENST00000487017 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.5■□□□□ 0.712e-6■■■■■ 41.4
COL7A1-210ENST00000487017 SERPINC1P01008 464 aa19.49■□□□□ 0.71
COL7A1-210ENST00000487017 UQCRHLA0A096LP55 91 aa19.49■□□□□ 0.71
COL7A1-210ENST00000487017 UQCRHP07919 91 aa19.49■□□□□ 0.71
COL7A1-210ENST00000487017 AACSQ86V21 672 aa19.49■□□□□ 0.71
COL7A1-210ENST00000487017 CCDC112Q8NEF3 446 aa19.49■□□□□ 0.71
COL7A1-210ENST00000487017 RRS1Q15050 365 aaKnown RBP19.49■□□□□ 0.71
COL7A1-210ENST00000487017 MPNDQ8N594 471 aa19.49■□□□□ 0.71
COL7A1-210ENST00000487017 SPATA32Q96LK8 384 aa19.49■□□□□ 0.71
COL7A1-210ENST00000487017 JAKMIP1Q96N16 626 aaKnown RBP19.49■□□□□ 0.71
COL7A1-210ENST00000487017 CAMSAP2Q08AD1 1489 aa19.49■□□□□ 0.71
COL7A1-210ENST00000487017 TXLNAP40222 546 aa19.49■□□□□ 0.71
COL7A1-210ENST00000487017 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.49■□□□□ 0.71
COL7A1-210ENST00000487017 TATP17735 454 aaPredicted RBP19.48■□□□□ 0.71
COL7A1-210ENST00000487017 ZNF530Q6P9A1 599 aaPredicted RBP19.48■□□□□ 0.71
COL7A1-210ENST00000487017 CWC27Q6UX04 472 aaKnown RBP19.48■□□□□ 0.71
COL7A1-210ENST00000487017 ALDH1L2Q3SY69 923 aa19.48■□□□□ 0.71
COL7A1-210ENST00000487017 MAGEC2Q9UBF1 373 aaPredicted RBP19.48■□□□□ 0.71
COL7A1-210ENST00000487017 PPP6R1Q9UPN7 881 aa19.48■□□□□ 0.71
COL7A1-210ENST00000487017 NUP62CLQ9H1M0 184 aa19.47■□□□□ 0.71
COL7A1-210ENST00000487017 SKAP1Q86WV1 359 aa19.47■□□□□ 0.71
COL7A1-210ENST00000487017 IL1RAPL2Q9NP60 686 aa19.47■□□□□ 0.71
COL7A1-210ENST00000487017 ABCC5O15440 1437 aa19.47■□□□□ 0.71
COL7A1-210ENST00000487017 PDIA4P13667 645 aaKnown RBP19.47■□□□□ 0.71
COL7A1-210ENST00000487017 ODF2Q5BJF6 829 aa19.47■□□□□ 0.71
COL7A1-210ENST00000487017 LRPPRCP42704 1394 aaKnown RBP19.47■□□□□ 0.71
COL7A1-210ENST00000487017 CNNM1Q9NRU3 951 aa19.46■□□□□ 0.71
COL7A1-210ENST00000487017 DACH1Q9UI36 760 aa19.46■□□□□ 0.71
COL7A1-210ENST00000487017 ABCC11Q96J66 1382 aa19.46■□□□□ 0.71
COL7A1-210ENST00000487017 BRPF1P55201 1214 aaPredicted RBP19.46■□□□□ 0.71
COL7A1-210ENST00000487017 ZFYVE27Q5T4F4 411 aa19.46■□□□□ 0.71
COL7A1-210ENST00000487017 CFAP45Q9UL16 551 aa19.46■□□□□ 0.71
COL7A1-210ENST00000487017 SSH1Q8WYL5 1049 aa19.46■□□□□ 0.71
COL7A1-210ENST00000487017 SLC3A2P08195 630 aaKnown RBP19.46■□□□□ 0.71
COL7A1-210ENST00000487017 ZSCAN30Q86W11 494 aa19.46■□□□□ 0.71
COL7A1-210ENST00000487017 MEX3CQ5U5Q3 659 aaKnown RBP19.45■□□□□ 0.7
COL7A1-210ENST00000487017 KRT32Q14532 448 aa19.45■□□□□ 0.7
COL7A1-210ENST00000487017 SYCE3A1L190 88 aa19.44■□□□□ 0.7
COL7A1-210ENST00000487017 TRIM22Q8IYM9 498 aa19.44■□□□□ 0.7
COL7A1-210ENST00000487017 KIAA0586Q9BVV6 1533 aa19.44■□□□□ 0.7
COL7A1-210ENST00000487017 IQGAP2Q13576 1575 aa19.44■□□□□ 0.7
COL7A1-210ENST00000487017 CBFA2T2O43439 604 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 173.5 ms