RNA–Protein interactions for RNA: ENST00000487010.1

COL3A1-206, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 2,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-206ENST00000487010 C1orf115Q9H7X2 142 aa15.21■□□□□ 0.03
COL3A1-206ENST00000487010 NFE2L2Q16236 605 aa15.21■□□□□ 0.03
COL3A1-206ENST00000487010 CDK19Q9BWU1 502 aa15.21■□□□□ 0.03
COL3A1-206ENST00000487010 HSP90AA1P07900 732 aaKnown RBP15.2■□□□□ 0.02
COL3A1-206ENST00000487010 CALD1Q05682 793 aaKnown RBP15.2■□□□□ 0.02
COL3A1-206ENST00000487010 GAS2L3Q86XJ1 694 aa15.2■□□□□ 0.02
COL3A1-206ENST00000487010 SIRT2Q8IXJ6 389 aa15.2■□□□□ 0.02
COL3A1-206ENST00000487010 NAP1L5Q96NT1 182 aaPredicted RBP15.2■□□□□ 0.02
COL3A1-206ENST00000487010 CABP1Q9NZU7 370 aa15.2■□□□□ 0.02
COL3A1-206ENST00000487010 POLKQ9UBT6 870 aa15.2■□□□□ 0.02
COL3A1-206ENST00000487010 REREQ9P2R6 1566 aa15.2■□□□□ 0.02
COL3A1-206ENST00000487010 TMEM131LA2VDJ0 1609 aa15.2■□□□□ 0.02
COL3A1-206ENST00000487010 NEO1Q92859 1461 aa15.2■□□□□ 0.02
COL3A1-206ENST00000487010 TSPYL6Q8N831 410 aa15.2■□□□□ 0.02
COL3A1-206ENST00000487010 ARHGEF40Q8TER5 1519 aa15.19■□□□□ 0.02
COL3A1-206ENST00000487010 ABCC4O15439 1325 aa15.19■□□□□ 0.02
COL3A1-206ENST00000487010 PHACTR3Q96KR7 559 aa15.19■□□□□ 0.02
COL3A1-206ENST00000487010 IFT57Q9NWB7 429 aa15.19■□□□□ 0.02
COL3A1-206ENST00000487010 ESPNB1AK53 854 aa15.18■□□□□ 0.02
COL3A1-206ENST00000487010 GNAI1P63096 354 aa15.18■□□□□ 0.02
COL3A1-206ENST00000487010 RBM42Q9BTD8 480 aaKnown RBP15.18■□□□□ 0.02
COL3A1-206ENST00000487010 FOXD4L1Q9NU39 408 aa15.18■□□□□ 0.02
COL3A1-206ENST00000487010 THUMPD2Q9BTF0 503 aaKnown RBP15.18■□□□□ 0.02
COL3A1-206ENST00000487010 MAP2P11137 1827 aaKnown RBP15.18■□□□□ 0.02
COL3A1-206ENST00000487010 PREX1Q8TCU6 1659 aa15.17■□□□□ 0.02
COL3A1-206ENST00000487010 CDC45O75419 566 aa15.17■□□□□ 0.02
COL3A1-206ENST00000487010 ZNF853P0CG23 659 aa15.17■□□□□ 0.02
COL3A1-206ENST00000487010 CLEC17AQ6ZS10 378 aa15.17■□□□□ 0.02
COL3A1-206ENST00000487010 HMOX1P09601 288 aa15.16■□□□□ 0.02
COL3A1-206ENST00000487010 FBLN1P23142 703 aa15.16■□□□□ 0.02
COL3A1-206ENST00000487010 GAS2L2Q8NHY3 880 aa15.16■□□□□ 0.02
COL3A1-206ENST00000487010 ERBB4Q15303 1308 aa15.16■□□□□ 0.02
COL3A1-206ENST00000487010 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.16■□□□□ 0.02
COL3A1-206ENST00000487010 MBIPQ9NS73 344 aa15.16■□□□□ 0.02
COL3A1-206ENST00000487010 ALKQ9UM73 1620 aa15.16■□□□□ 0.02
COL3A1-206ENST00000487010 SSFA2P28290 1259 aa15.15■□□□□ 0.02
COL3A1-206ENST00000487010 TRIM44Q96DX7 344 aaPredicted RBP15.15■□□□□ 0.02
COL3A1-206ENST00000487010 ELL2O00472 640 aaPredicted RBP15.15■□□□□ 0.02
COL3A1-206ENST00000487010 RICTORQ6R327 1708 aa15.14■□□□□ 0.01
COL3A1-206ENST00000487010 TWISTNBQ3B726 338 aaPredicted RBP15.14■□□□□ 0.01
COL3A1-206ENST00000487010 API5Q9BZZ5 524 aaKnown RBP15.14■□□□□ 0.01
COL3A1-206ENST00000487010 ATP7BP35670 1465 aa15.14■□□□□ 0.01
COL3A1-206ENST00000487010 GOLGA6L22H0YM25 854 aa15.13■□□□□ 0.01
COL3A1-206ENST00000487010 GSPT1P15170 499 aaKnown RBP15.13■□□□□ 0.01
COL3A1-206ENST00000487010 IL13P35225 146 aa15.13■□□□□ 0.01
COL3A1-206ENST00000487010 PLEKHM2Q8IWE5 1019 aa15.13■□□□□ 0.01
COL3A1-206ENST00000487010 KIF24Q5T7B8 1368 aa15.13■□□□□ 0.01
COL3A1-206ENST00000487010 C8orf58Q8NAV2 365 aa15.13■□□□□ 0.01
COL3A1-206ENST00000487010 CFAP44Q96MT7 982 aa15.13■□□□□ 0.01
COL3A1-206ENST00000487010 DLG5Q8TDM6 1919 aa15.13■□□□□ 0.01
COL3A1-206ENST00000487010 KNDC1Q76NI1 1749 aa15.12■□□□□ 0.01
COL3A1-206ENST00000487010 DCTPP1Q9H773 170 aa15.12■□□□□ 0.01
COL3A1-206ENST00000487010 YEATS2Q9ULM3 1422 aa15.12■□□□□ 0.01
COL3A1-206ENST00000487010 IBTKQ9P2D0 1353 aaPredicted RBP15.12■□□□□ 0.01
COL3A1-206ENST00000487010 BAG4O95429 457 aaKnown RBP15.12■□□□□ 0.01
COL3A1-206ENST00000487010 RABEP1Q15276 862 aa15.12■□□□□ 0.01
COL3A1-206ENST00000487010 KLHL40Q2TBA0 621 aa15.12■□□□□ 0.01
COL3A1-206ENST00000487010 LMOD3Q0VAK6 560 aa15.11■□□□□ 0.01
COL3A1-206ENST00000487010 EMILIN1Q9Y6C2 1016 aa15.11■□□□□ 0.01
COL3A1-206ENST00000487010 CCDC173Q0VFZ6 552 aa15.1■□□□□ 0.01
COL3A1-206ENST00000487010 TTC22Q5TAA0 569 aa15.1■□□□□ 0.01
COL3A1-206ENST00000487010 CDK12Q9NYV4 1490 aaPredicted RBP15.1■□□□□ 0.01
COL3A1-206ENST00000487010 AK9Q5TCS8 1911 aa15.1■□□□□ 0.01
COL3A1-206ENST00000487010 PPP1R9BQ96SB3 815 aa15.1■□□□□ 0.01
COL3A1-206ENST00000487010 DDX49Q9Y6V7 483 aaKnown RBP15.1■□□□□ 0.01
COL3A1-206ENST00000487010 DLC1Q96QB1 1528 aa15.09■□□□□ 0.01
COL3A1-206ENST00000487010 FBXO31Q5XUX0 539 aaPredicted RBP15.09■□□□□ 0.01
COL3A1-206ENST00000487010 OSCARQ8IYS5 282 aa15.09■□□□□ 0.01
COL3A1-206ENST00000487010 USP26Q9BXU7 913 aa15.09■□□□□ 0.01
COL3A1-206ENST00000487010 RIMS2Q9UQ26 1411 aa15.09■□□□□ 0.01
COL3A1-206ENST00000487010 NASPP49321 788 aaPredicted RBP15.08■□□□□ 0.01
COL3A1-206ENST00000487010 NUCB2P80303 420 aa15.08■□□□□ 0
COL3A1-206ENST00000487010 INTS3Q68E01 1043 aaKnown RBP15.08■□□□□ 0
COL3A1-206ENST00000487010 WAPLQ7Z5K2 1190 aa15.08■□□□□ 0
COL3A1-206ENST00000487010 AATKQ6ZMQ8 1374 aa15.08■□□□□ 0
COL3A1-206ENST00000487010 EDC4Q6P2E9 1401 aaKnown RBP15.07■□□□□ 0
COL3A1-206ENST00000487010 C16orf71Q8IYS4 520 aaPredicted RBP15.07■□□□□ 0
COL3A1-206ENST00000487010 CPSF1Q10570 1443 aaKnown RBP15.07■□□□□ 0
COL3A1-206ENST00000487010 CYP2E1P05181 493 aaPredicted RBP15.07■□□□□ 0
COL3A1-206ENST00000487010 ANKRD44Q8N8A2 993 aa15.07■□□□□ 0
COL3A1-206ENST00000487010 FAM83GA6ND36 823 aa15.06■□□□□ 0
COL3A1-206ENST00000487010 NME9Q86XW9 330 aa15.06■□□□□ 0
COL3A1-206ENST00000487010 STAG3Q9UJ98 1225 aa15.06■□□□□ 0
COL3A1-206ENST00000487010 RRP9O43818 475 aaKnown RBP15.05■□□□□ 0
COL3A1-206ENST00000487010 ZNF445P59923 1031 aa15.05■□□□□ 0
COL3A1-206ENST00000487010 ATP10DQ9P241 1426 aa15.05■□□□□ 0
COL3A1-206ENST00000487010 HSP90AA2PQ14568 343 aaPredicted RBP15.05■□□□□ -0
COL3A1-206ENST00000487010 MCTP1Q6DN14 999 aa15.05■□□□□ -0
COL3A1-206ENST00000487010 RPAP2Q8IXW5 612 aaPredicted RBP15.05■□□□□ -0
COL3A1-206ENST00000487010 ANP32BQ92688 251 aaKnown RBP15.05■□□□□ -0
COL3A1-206ENST00000487010 CWC22Q9HCG8 908 aaKnown RBP15.05■□□□□ -0
COL3A1-206ENST00000487010 ZRANB1Q9UGI0 708 aa15.05■□□□□ -0
COL3A1-206ENST00000487010 DCTN1Q14203 1278 aa15.04■□□□□ -0
COL3A1-206ENST00000487010 LMBRD1Q9NUN5 540 aa15.04■□□□□ -0
COL3A1-206ENST00000487010 SDSP20132 328 aa15.04■□□□□ -0
COL3A1-206ENST00000487010 OTUD7AQ8TE49 926 aaPredicted RBP15.04■□□□□ -0
COL3A1-206ENST00000487010 RIMBP3CA6NJZ7 1639 aa15.03■□□□□ -0
COL3A1-206ENST00000487010 RIMBP3BA6NNM3 1639 aa15.03■□□□□ -0
COL3A1-206ENST00000487010 RIMBP3Q9UFD9 1639 aa15.03■□□□□ -0
COL3A1-206ENST00000487010 RGS12O14924 1447 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms