RNA–Protein interactions for RNA: ENST00000480022.1

CHD6-208, Transcript of chromodomain helicase DNA binding protein 6, human

TSL 2

Gene CHD6, Length 2,829 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD6-208	ENST00000480022	C19orf44	Q9H6X5	657 aa		13.65	□□□□□ -0.22
CHD6-208	ENST00000480022	WASL	O00401	505 aa	Predicted RBP	13.64	□□□□□ -0.23
CHD6-208	ENST00000480022	TMF1	P82094	1093 aa		13.64	□□□□□ -0.23
CHD6-208	ENST00000480022	EVC2	Q86UK5	1308 aa		13.64	□□□□□ -0.23
CHD6-208	ENST00000480022	TULP4	Q9NRJ4	1543 aa		13.64	□□□□□ -0.23
CHD6-208	ENST00000480022	CDK19	Q9BWU1	502 aa		13.64	□□□□□ -0.23
CHD6-208	ENST00000480022	ADGRB2	O60241	1585 aa		13.64	□□□□□ -0.23
CHD6-208	ENST00000480022	NALCN	Q8IZF0	1738 aa		13.64	□□□□□ -0.23
CHD6-208	ENST00000480022	NCL	P19338	710 aa	Known RBP	13.63	□□□□□ -0.23
CHD6-208	ENST00000480022	R3HCC1	Q9Y3T6	440 aa	Known RBP	13.63	□□□□□ -0.23
CHD6-208	ENST00000480022	MSH6	P52701	1360 aa		13.62	□□□□□ -0.23
CHD6-208	ENST00000480022	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.62	□□□□□ -0.23
CHD6-208	ENST00000480022	CABP2	Q9NPB3	220 aa		13.62	□□□□□ -0.23
CHD6-208	ENST00000480022	SRPK2	P78362	688 aa	Known RBP	13.62	□□□□□ -0.23
CHD6-208	ENST00000480022	DMTN	Q08495	405 aa		13.62	□□□□□ -0.23
CHD6-208	ENST00000480022	BBX	Q8WY36	941 aa	Predicted RBP	13.62	□□□□□ -0.23
CHD6-208	ENST00000480022	ANP32B	Q92688	251 aa	Known RBP	13.62	□□□□□ -0.23
CHD6-208	ENST00000480022	XIRP1	Q702N8	1843 aa	Known RBP	13.62	□□□□□ -0.23
CHD6-208	ENST00000480022	GOLGA2	Q08379	1002 aa		13.61	□□□□□ -0.23
CHD6-208	ENST00000480022	CDC42BPG	Q6DT37	1551 aa		13.61	□□□□□ -0.23
CHD6-208	ENST00000480022	UQCRHL	A0A096LP55	91 aa		13.61	□□□□□ -0.23
CHD6-208	ENST00000480022	UQCRH	P07919	91 aa		13.61	□□□□□ -0.23
CHD6-208	ENST00000480022	DCC	P43146	1447 aa		13.6	□□□□□ -0.23
CHD6-208	ENST00000480022	NUTM2F	A1L443	756 aa		13.6	□□□□□ -0.23
CHD6-208	ENST00000480022	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.6	□□□□□ -0.23
CHD6-208	ENST00000480022	PRDM10	Q9NQV6	1147 aa		13.6	□□□□□ -0.23
CHD6-208	ENST00000480022	PER1	O15534	1290 aa	Predicted RBP	13.6	□□□□□ -0.23
CHD6-208	ENST00000480022	ATF3	P18847	181 aa		13.6	□□□□□ -0.23
CHD6-208	ENST00000480022	DYNC1I1	O14576	645 aa		13.59	□□□□□ -0.23
CHD6-208	ENST00000480022	CGNL1	Q0VF96	1302 aa		13.59	□□□□□ -0.23
CHD6-208	ENST00000480022	NASP	P49321	788 aa	Predicted RBP	13.59	□□□□□ -0.23
CHD6-208	ENST00000480022	CDCA8	Q53HL2	280 aa		13.59	□□□□□ -0.23
CHD6-208	ENST00000480022	CADPS2	Q86UW7	1296 aa		13.59	□□□□□ -0.23
CHD6-208	ENST00000480022	PRR36	Q9H6K5	1346 aa		13.59	□□□□□ -0.23
CHD6-208	ENST00000480022	HSP90B1	P14625	803 aa	Known RBP	13.59	□□□□□ -0.23
CHD6-208	ENST00000480022	PUS7	Q96PZ0	661 aa	Known RBP	13.59	□□□□□ -0.23
CHD6-208	ENST00000480022	ADAMTS8	Q9UP79	889 aa		13.59	□□□□□ -0.23
CHD6-208	ENST00000480022	ZNF521	Q96K83	1311 aa		13.58	□□□□□ -0.23
CHD6-208	ENST00000480022	PTMS	P20962	102 aa		13.58	□□□□□ -0.24
CHD6-208	ENST00000480022	CC2D1B	Q5T0F9	858 aa	Known RBP	13.58	□□□□□ -0.24
CHD6-208	ENST00000480022	ARID3A	Q99856	593 aa		13.58	□□□□□ -0.24
CHD6-208	ENST00000480022	CERK	Q8TCT0	537 aa		13.58	□□□□□ -0.24
CHD6-208	ENST00000480022	NUDT16	Q96DE0	195 aa	Known RBP	13.58	□□□□□ -0.24
CHD6-208	ENST00000480022	ZNF692	Q9BU19	519 aa	Predicted RBP	13.58	□□□□□ -0.24
CHD6-208	ENST00000480022	GTF2E1	P29083	439 aa	Predicted RBP	13.57	□□□□□ -0.24
CHD6-208	ENST00000480022	CLUAP1	Q96AJ1	413 aa		13.57	□□□□□ -0.24
CHD6-208	ENST00000480022	ATP7B	P35670	1465 aa		13.57	□□□□□ -0.24
CHD6-208	ENST00000480022	CANX	P27824	592 aa	Known RBP	13.57	□□□□□ -0.24
CHD6-208	ENST00000480022	TNNT2	P45379	298 aa	Predicted RBP	13.57	□□□□□ -0.24
CHD6-208	ENST00000480022	SLFN5	Q08AF3	891 aa		13.57	□□□□□ -0.24
CHD6-208	ENST00000480022	GBP4	Q96PP9	640 aa		13.57	□□□□□ -0.24
CHD6-208	ENST00000480022	MST1R	Q04912	1400 aa		13.56	□□□□□ -0.24
CHD6-208	ENST00000480022	ATAD2	Q6PL18	1390 aa		13.56	□□□□□ -0.24
CHD6-208	ENST00000480022	HS1BP3	Q53T59	392 aa		13.56	□□□□□ -0.24
CHD6-208	ENST00000480022	HSCB	Q8IWL3	235 aa		13.56	□□□□□ -0.24
CHD6-208	ENST00000480022	FMN2	Q9NZ56	1722 aa		13.56	□□□□□ -0.24
CHD6-208	ENST00000480022	ANKAR	Q7Z5J8	1434 aa		13.56	□□□□□ -0.24
CHD6-208	ENST00000480022	ZNF500	O60304	480 aa	Predicted RBP	13.56	□□□□□ -0.24
CHD6-208	ENST00000480022	CCDC94	Q9BW85	323 aa	Predicted RBP	13.56	□□□□□ -0.24
CHD6-208	ENST00000480022	CCDC61	Q9Y6R9	512 aa		13.55	□□□□□ -0.24
CHD6-208	ENST00000480022	C1orf167	Q5SNV9	1468 aa		13.55	□□□□□ -0.24
CHD6-208	ENST00000480022	ZSCAN20	P17040	1043 aa	Predicted RBP	13.55	□□□□□ -0.24
CHD6-208	ENST00000480022	C22orf23	Q9BZE7	217 aa		13.55	□□□□□ -0.24
CHD6-208	ENST00000480022	USP32	Q8NFA0	1604 aa		13.55	□□□□□ -0.24
CHD6-208	ENST00000480022	IQSEC2	Q5JU85	1478 aa		13.55	□□□□□ -0.24
CHD6-208	ENST00000480022	BCAR3	O75815	825 aa		13.54	□□□□□ -0.24
CHD6-208	ENST00000480022	PDE3A	Q14432	1141 aa		13.54	□□□□□ -0.24
CHD6-208	ENST00000480022	TNPO1	Q92973	898 aa	Known RBP	13.54	□□□□□ -0.24
CHD6-208	ENST00000480022	SLAIN2	Q9P270	581 aa		13.54	□□□□□ -0.24
CHD6-208	ENST00000480022	CABP1	Q9NZU7	370 aa		13.54	□□□□□ -0.24
CHD6-208	ENST00000480022	CSPP1	Q1MSJ5	1256 aa		13.54	□□□□□ -0.24
CHD6-208	ENST00000480022	TMEM132A	Q24JP5	1023 aa		13.54	□□□□□ -0.24
CHD6-208	ENST00000480022	BCCIP	Q9P287	314 aa	Known RBP eCLIP	13.54	□□□□□ -0.24
CHD6-208	ENST00000480022	NOL7	Q9UMY1	257 aa	Known RBP	13.54	□□□□□ -0.24
CHD6-208	ENST00000480022	DDIT3	P35638	169 aa		13.53	□□□□□ -0.24
CHD6-208	ENST00000480022	WDR43	Q15061	677 aa	Known RBP eCLIP	13.53	□□□□□ -0.24
CHD6-208	ENST00000480022	TRMT2A	Q8IZ69	625 aa	Known RBP	13.53	□□□□□ -0.24
CHD6-208	ENST00000480022	ORAI2	Q96SN7	254 aa		13.53	□□□□□ -0.24
CHD6-208	ENST00000480022	SLC12A5	Q9H2X9	1139 aa		13.53	□□□□□ -0.24
CHD6-208	ENST00000480022	PPIP5K1	Q6PFW1	1433 aa		13.53	□□□□□ -0.24
CHD6-208	ENST00000480022	ESCO1	Q5FWF5	840 aa		13.53	□□□□□ -0.24
CHD6-208	ENST00000480022	PMFBP1	Q8TBY8	1022 aa		13.53	□□□□□ -0.24
CHD6-208	ENST00000480022	NAP1L2	Q9ULW6	460 aa	Predicted RBP	13.53	□□□□□ -0.24
CHD6-208	ENST00000480022	NINL	Q9Y2I6	1382 aa		13.53	□□□□□ -0.24
CHD6-208	ENST00000480022	PPP4R3B	Q5MIZ7	849 aa		13.52	□□□□□ -0.24
CHD6-208	ENST00000480022	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.52	□□□□□ -0.24
CHD6-208	ENST00000480022	XPC	Q01831	940 aa	Predicted RBP	13.52	□□□□□ -0.25
CHD6-208	ENST00000480022	PLEKHG3	A1L390	1219 aa		13.51	□□□□□ -0.25
CHD6-208	ENST00000480022	KIF20A	O95235	890 aa		13.51	□□□□□ -0.25
CHD6-208	ENST00000480022	GTPBP4	Q9BZE4	634 aa	Known RBP	13.51	□□□□□ -0.25
CHD6-208	ENST00000480022	SASS6	Q6UVJ0	657 aa		13.51	□□□□□ -0.25
CHD6-208	ENST00000480022	IBTK	Q9P2D0	1353 aa	Predicted RBP	13.51	□□□□□ -0.25
CHD6-208	ENST00000480022	TOM1	O60784	492 aa		13.5	□□□□□ -0.25
CHD6-208	ENST00000480022	PHF8	Q9UPP1	1060 aa		13.5	□□□□□ -0.25
CHD6-208	ENST00000480022	PDZRN3	Q9UPQ7	1066 aa		13.5	□□□□□ -0.25
CHD6-208	ENST00000480022	UBAP1L	F5GYI3	381 aa		13.5	□□□□□ -0.25
CHD6-208	ENST00000480022	BRINP3	Q76B58	766 aa		13.5	□□□□□ -0.25
CHD6-208	ENST00000480022	COG6	Q9Y2V7	657 aa		13.5	□□□□□ -0.25
CHD6-208	ENST00000480022	TOPAZ1	Q8N9V7	1692 aa		13.5	□□□□□ -0.25
CHD6-208	ENST00000480022	MFAP1	P55081	439 aa	Known RBP	13.49	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms