RNA–Protein interactions for RNA: ENST00000476135.5

HDAC9-223, Transcript of histone deacetylase 9, human

TSL 5

Gene HDAC9, Length 1,115 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-223	ENST00000476135	TRIM37	O94972	964 aa		11.15	□□□□□ -0.62
HDAC9-223	ENST00000476135	APBA3	O96018	575 aa		11.15	□□□□□ -0.62
HDAC9-223	ENST00000476135	FAM196A	Q6ZSG2	479 aa		11.15	□□□□□ -0.62
HDAC9-223	ENST00000476135	CABLES1	Q8TDN4	633 aa		11.15	□□□□□ -0.62
HDAC9-223	ENST00000476135	PLSCR2	Q9NRY7	297 aa		11.15	□□□□□ -0.62
HDAC9-223	ENST00000476135	NAIP	Q13075	1403 aa		11.15	□□□□□ -0.62
HDAC9-223	ENST00000476135	SPATA31A5	Q5VU36	1347 aa		11.13	□□□□□ -0.63
HDAC9-223	ENST00000476135	SPATA31A7	Q8IWB4	1347 aa		11.13	□□□□□ -0.63
HDAC9-223	ENST00000476135	VGF	O15240	615 aa	Predicted RBP	11.13	□□□□□ -0.63
HDAC9-223	ENST00000476135	PSME1	Q06323	249 aa		11.13	□□□□□ -0.63
HDAC9-223	ENST00000476135	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.13	□□□□□ -0.63
HDAC9-223	ENST00000476135	NUP155	O75694	1391 aa		11.13	□□□□□ -0.63
HDAC9-223	ENST00000476135	FMN2	Q9NZ56	1722 aa		11.12	□□□□□ -0.63
HDAC9-223	ENST00000476135	NUTM2F	A1L443	756 aa		11.12	□□□□□ -0.63
HDAC9-223	ENST00000476135	SLC24A1	O60721	1099 aa		11.12	□□□□□ -0.63
HDAC9-223	ENST00000476135	BTG4	Q9NY30	223 aa		11.12	□□□□□ -0.63
HDAC9-223	ENST00000476135	COL14A1	Q05707	1796 aa	Known RBP	11.12	□□□□□ -0.63
HDAC9-223	ENST00000476135	SBNO1	A3KN83	1393 aa		11.12	□□□□□ -0.63
HDAC9-223	ENST00000476135	ARHGEF10	O15013	1369 aa		11.12	□□□□□ -0.63
HDAC9-223	ENST00000476135	KIF1B	O60333	1816 aa		11.12	□□□□□ -0.63
HDAC9-223	ENST00000476135	CLTCL1	P53675	1640 aa		11.1	□□□□□ -0.63
HDAC9-223	ENST00000476135	DPY19L2	Q6NUT2	758 aa		11.1	□□□□□ -0.63
HDAC9-223	ENST00000476135	RNF25	Q96BH1	459 aa	Predicted RBP	11.1	□□□□□ -0.63
HDAC9-223	ENST00000476135	RRBP1	Q9P2E9	1410 aa	Known RBP	11.09	□□□□□ -0.63
HDAC9-223	ENST00000476135	NRK	Q7Z2Y5	1582 aa		11.09	□□□□□ -0.63
HDAC9-223	ENST00000476135	ST18	O60284	1047 aa		11.09	□□□□□ -0.63
HDAC9-223	ENST00000476135	PCDH10	Q9P2E7	1040 aa		11.09	□□□□□ -0.63
HDAC9-223	ENST00000476135	GIGYF1	O75420	1035 aa	Predicted RBP	11.08	□□□□□ -0.64
HDAC9-223	ENST00000476135	FAM50A	Q14320	339 aa	Known RBP	11.08	□□□□□ -0.64
HDAC9-223	ENST00000476135	C3orf67	Q6ZVT6	689 aa		11.08	□□□□□ -0.64
HDAC9-223	ENST00000476135	PHF8	Q9UPP1	1060 aa		11.08	□□□□□ -0.64
HDAC9-223	ENST00000476135	CEP350	Q5VT06	3117 aa		11.08	□□□□□ -0.64
HDAC9-223	ENST00000476135	TECPR2	O15040	1411 aa		11.08	□□□□□ -0.64
HDAC9-223	ENST00000476135	CASZ1	Q86V15	1759 aa		11.08	□□□□□ -0.64
HDAC9-223	ENST00000476135	ROCK1	Q13464	1354 aa		11.07	□□□□□ -0.64
HDAC9-223	ENST00000476135	RIOK3	O14730	519 aa	Known RBP	11.07	□□□□□ -0.64
HDAC9-223	ENST00000476135	LMOD2	Q6P5Q4	547 aa		11.07	□□□□□ -0.64
HDAC9-223	ENST00000476135	RGPD8	O14715	1765 aa	Predicted RBP	11.07	□□□□□ -0.64
HDAC9-223	ENST00000476135	RPGRIP1L	Q68CZ1	1315 aa		11.07	□□□□□ -0.64
HDAC9-223	ENST00000476135	MYOM1	P52179	1685 aa		11.06	□□□□□ -0.64
HDAC9-223	ENST00000476135	WAPL	Q7Z5K2	1190 aa		11.06	□□□□□ -0.64
HDAC9-223	ENST00000476135	SPATA31A1	Q5TZJ5	1347 aa		11.06	□□□□□ -0.64
HDAC9-223	ENST00000476135	NRXN1	Q9ULB1	1477 aa		11.06	□□□□□ -0.64
HDAC9-223	ENST00000476135	UTRN	P46939	3433 aa		11.05	□□□□□ -0.64
HDAC9-223	ENST00000476135	EFCAB3	Q8N7B9	438 aa		11.05	□□□□□ -0.64
HDAC9-223	ENST00000476135	KNDC1	Q76NI1	1749 aa		11.04	□□□□□ -0.64
HDAC9-223	ENST00000476135	RGPD3	A6NKT7	1758 aa	Predicted RBP	11.04	□□□□□ -0.64
HDAC9-223	ENST00000476135	PPL	O60437	1756 aa		11.04	□□□□□ -0.64
HDAC9-223	ENST00000476135	RGPD4	Q7Z3J3	1758 aa		11.04	□□□□□ -0.64
HDAC9-223	ENST00000476135	SYT17	Q9BSW7	474 aa		11.04	□□□□□ -0.64
HDAC9-223	ENST00000476135	IFT172	Q9UG01	1749 aa		11.04	□□□□□ -0.64
HDAC9-223	ENST00000476135	PTGER2	P43116	358 aa		11.03	□□□□□ -0.64
HDAC9-223	ENST00000476135	PDE3B	Q13370	1112 aa		11.03	□□□□□ -0.64
HDAC9-223	ENST00000476135	ABCC11	Q96J66	1382 aa		11.03	□□□□□ -0.64
HDAC9-223	ENST00000476135	TRPM3	Q9HCF6	1732 aa	Predicted RBP	11.02	□□□□□ -0.65
HDAC9-223	ENST00000476135	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.02	□□□□□ -0.65
HDAC9-223	ENST00000476135	SNPH	O15079	494 aa		11.02	□□□□□ -0.65
HDAC9-223	ENST00000476135	ZFP91	Q96JP5	570 aa	Predicted RBP	11.02	□□□□□ -0.65
HDAC9-223	ENST00000476135	FHDC1	Q9C0D6	1143 aa	Predicted RBP	11.02	□□□□□ -0.65
HDAC9-223	ENST00000476135	STK26	Q9P289	416 aa		11.02	□□□□□ -0.65
HDAC9-223	ENST00000476135	PLEKHH1	Q9ULM0	1364 aa		11.02	□□□□□ -0.65
HDAC9-223	ENST00000476135	ALS2	Q96Q42	1657 aa		11.01	□□□□□ -0.65
HDAC9-223	ENST00000476135	DLC1	Q96QB1	1528 aa		11.01	□□□□□ -0.65
HDAC9-223	ENST00000476135	C11orf95	C9JLR9	678 aa	Predicted RBP	11.01	□□□□□ -0.65
HDAC9-223	ENST00000476135	BARGIN	Q6ZT62	677 aa		11.01	□□□□□ -0.65
HDAC9-223	ENST00000476135	BOLA1	Q9Y3E2	137 aa		11.01	□□□□□ -0.65
HDAC9-223	ENST00000476135	CRYBG1	Q9Y4K1	1723 aa		11.01	□□□□□ -0.65
HDAC9-223	ENST00000476135	PLSCR1	O15162	318 aa		11	□□□□□ -0.65
HDAC9-223	ENST00000476135	ZBTB7A	O95365	584 aa		11	□□□□□ -0.65
HDAC9-223	ENST00000476135	ANO8	Q9HCE9	1232 aa	Predicted RBP	11	□□□□□ -0.65
HDAC9-223	ENST00000476135	SIRT1	Q96EB6	747 aa		10.99	□□□□□ -0.65
HDAC9-223	ENST00000476135	PDGFD	Q9GZP0	370 aa	Predicted RBP	10.99	□□□□□ -0.65
HDAC9-223	ENST00000476135	PRDM11	Q9NQV5	511 aa		10.99	□□□□□ -0.65
HDAC9-223	ENST00000476135		G3V3G9	751 aa		10.98	□□□□□ -0.65
HDAC9-223	ENST00000476135	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	10.97	□□□□□ -0.65
HDAC9-223	ENST00000476135	MAP3K5	Q99683	1374 aa		10.97	□□□□□ -0.65
HDAC9-223	ENST00000476135	SHANK3	Q9BYB0	1731 aa		10.97	□□□□□ -0.65
HDAC9-223	ENST00000476135	ANKAR	Q7Z5J8	1434 aa		10.96	□□□□□ -0.65
HDAC9-223	ENST00000476135	CDAN1	Q8IWY9	1227 aa		10.96	□□□□□ -0.65
HDAC9-223	ENST00000476135	PMFBP1	Q8TBY8	1022 aa		10.96	□□□□□ -0.65
HDAC9-223	ENST00000476135	STRN4	Q9NRL3	753 aa		10.96	□□□□□ -0.65
HDAC9-223	ENST00000476135	SBF2	Q86WG5	1849 aa		10.95	□□□□□ -0.66
HDAC9-223	ENST00000476135	YTHDC2	Q9H6S0	1430 aa	Known RBP	10.95	□□□□□ -0.66
HDAC9-223	ENST00000476135	GPRASP1	Q5JY77	1395 aa		10.95	□□□□□ -0.66
HDAC9-223	ENST00000476135	BCL11B	Q9C0K0	894 aa	Predicted RBP	10.95	□□□□□ -0.66
HDAC9-223	ENST00000476135	MTFR1L	Q9H019	292 aa		10.95	□□□□□ -0.66
HDAC9-223	ENST00000476135	PARP4	Q9UKK3	1724 aa	Known RBP	10.95	□□□□□ -0.66
HDAC9-223	ENST00000476135	KIAA0232	Q92628	1395 aa		10.94	□□□□□ -0.66
HDAC9-223	ENST00000476135	ADGRF5	Q8IZF2	1346 aa		10.94	□□□□□ -0.66
HDAC9-223	ENST00000476135	SOX12	O15370	315 aa		10.94	□□□□□ -0.66
HDAC9-223	ENST00000476135	GPR162	Q16538	588 aa		10.94	□□□□□ -0.66
HDAC9-223	ENST00000476135	TMEM132E	Q6IEE7	984 aa		10.94	□□□□□ -0.66
HDAC9-223	ENST00000476135	TCP11L2	Q8N4U5	519 aa		10.94	□□□□□ -0.66
HDAC9-223	ENST00000476135	USP35	Q9P2H5	1018 aa		10.94	□□□□□ -0.66
HDAC9-223	ENST00000476135	THRAP3	Q9Y2W1	955 aa	Known RBP	10.94	□□□□□ -0.66
HDAC9-223	ENST00000476135	PEAK1	Q9H792	1746 aa		10.94	□□□□□ -0.66
HDAC9-223	ENST00000476135	SSH2	Q76I76	1423 aa		10.93	□□□□□ -0.66
HDAC9-223	ENST00000476135	ACIN1	Q9UKV3	1341 aa	Known RBP	10.93	□□□□□ -0.66
HDAC9-223	ENST00000476135	HSPA6	P17066	643 aa		10.93	□□□□□ -0.66
HDAC9-223	ENST00000476135	EVA1C	P58658	441 aa		10.93	□□□□□ -0.66

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