RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 USP6P35125 1406 aa9.74□□□□□ -0.85
LIMD1-204ENST00000474665 PRELPP51888 382 aa9.74□□□□□ -0.85
LIMD1-204ENST00000474665 PSME1Q06323 249 aa9.74□□□□□ -0.85
LIMD1-204ENST00000474665 TMC1Q8TDI8 760 aa9.74□□□□□ -0.85
LIMD1-204ENST00000474665 SBNO1A3KN83 1393 aa9.74□□□□□ -0.85
LIMD1-204ENST00000474665 CDCA8Q53HL2 280 aa9.73□□□□□ -0.85
LIMD1-204ENST00000474665 CARD14Q9BXL6 1004 aa9.73□□□□□ -0.85
LIMD1-204ENST00000474665 THSD7AQ9UPZ6 1657 aa9.73□□□□□ -0.85
LIMD1-204ENST00000474665 SHANK3Q9BYB0 1731 aa9.73□□□□□ -0.85
LIMD1-204ENST00000474665 TNS3Q68CZ2 1445 aa9.73□□□□□ -0.85
LIMD1-204ENST00000474665 NRAPQ86VF7 1730 aa9.72□□□□□ -0.85
LIMD1-204ENST00000474665 CRYBG1Q9Y4K1 1723 aa9.72□□□□□ -0.85
LIMD1-204ENST00000474665 CASZ1Q86V15 1759 aa9.72□□□□□ -0.85
LIMD1-204ENST00000474665 ANKRD36BQ8N2N9 1353 aa9.72□□□□□ -0.85
LIMD1-204ENST00000474665 PIK3C2AO00443 1686 aa9.71□□□□□ -0.85
LIMD1-204ENST00000474665 PELP1Q8IZL8 1130 aaKnown RBP9.71□□□□□ -0.86
LIMD1-204ENST00000474665 POLR3GLQ9BT43 218 aa9.71□□□□□ -0.86
LIMD1-204ENST00000474665 ZNF692Q9BU19 519 aaPredicted RBP9.71□□□□□ -0.86
LIMD1-204ENST00000474665 TTC21BQ7Z4L5 1316 aa9.71□□□□□ -0.86
LIMD1-204ENST00000474665 KTN1Q86UP2 1357 aaKnown RBP9.71□□□□□ -0.86
LIMD1-204ENST00000474665 PDE3BQ13370 1112 aa9.7□□□□□ -0.86
LIMD1-204ENST00000474665 TNS4Q8IZW8 715 aa9.7□□□□□ -0.86
LIMD1-204ENST00000474665 SGIP1Q9BQI5 828 aa9.7□□□□□ -0.86
LIMD1-204ENST00000474665 TERF2IPQ9NYB0 399 aa9.7□□□□□ -0.86
LIMD1-204ENST00000474665 ABCA3Q99758 1704 aa9.7□□□□□ -0.86
LIMD1-204ENST00000474665 BRD4O60885 1362 aaPredicted RBP9.69□□□□□ -0.86
LIMD1-204ENST00000474665 PAK3O75914 559 aaPredicted RBP9.69□□□□□ -0.86
LIMD1-204ENST00000474665 SPATA31A1Q5TZJ5 1347 aa9.69□□□□□ -0.86
LIMD1-204ENST00000474665 NUTM2GQ5VZR2 741 aa9.69□□□□□ -0.86
LIMD1-204ENST00000474665 EDC4Q6P2E9 1401 aaKnown RBP9.69□□□□□ -0.86
LIMD1-204ENST00000474665 NME9Q86XW9 330 aa9.69□□□□□ -0.86
LIMD1-204ENST00000474665 BCL11BQ9C0K0 894 aaPredicted RBP9.69□□□□□ -0.86
LIMD1-204ENST00000474665 PANK3Q9H999 370 aa9.69□□□□□ -0.86
LIMD1-204ENST00000474665 PER1O15534 1290 aaPredicted RBP9.68□□□□□ -0.86
LIMD1-204ENST00000474665 HDGFL2Q7Z4V5 671 aaPredicted RBP9.68□□□□□ -0.86
LIMD1-204ENST00000474665 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.68□□□□□ -0.86
LIMD1-204ENST00000474665 DNAJC5GQ8N7S2 189 aa9.68□□□□□ -0.86
LIMD1-204ENST00000474665 ARXQ96QS3 562 aa9.68□□□□□ -0.86
LIMD1-204ENST00000474665 USP35Q9P2H5 1018 aa9.68□□□□□ -0.86
LIMD1-204ENST00000474665 USP54Q70EL1 1684 aa9.67□□□□□ -0.86
LIMD1-204ENST00000474665 ARHGEF10O15013 1369 aa9.67□□□□□ -0.86
LIMD1-204ENST00000474665 USP31Q70CQ4 1352 aa9.67□□□□□ -0.86
LIMD1-204ENST00000474665 USP19O94966 1318 aa9.67□□□□□ -0.86
LIMD1-204ENST00000474665 FYB1O15117 783 aa9.67□□□□□ -0.86
LIMD1-204ENST00000474665 PROM2Q8N271 834 aa9.67□□□□□ -0.86
LIMD1-204ENST00000474665 ABTB2Q8N961 1025 aa9.67□□□□□ -0.86
LIMD1-204ENST00000474665 NSD3Q9BZ95 1437 aa9.66□□□□□ -0.86
LIMD1-204ENST00000474665 ATP10DQ9P241 1426 aa9.66□□□□□ -0.86
LIMD1-204ENST00000474665 TTC21AQ8NDW8 1320 aa9.66□□□□□ -0.86
LIMD1-204ENST00000474665 ZNF526Q8TF50 670 aaPredicted RBP9.66□□□□□ -0.86
LIMD1-204ENST00000474665 MTFR1LQ9H019 292 aa9.66□□□□□ -0.86
LIMD1-204ENST00000474665 GPBP1L1Q9HC44 474 aaPredicted RBP9.66□□□□□ -0.86
LIMD1-204ENST00000474665 STRN4Q9NRL3 753 aa9.66□□□□□ -0.86
LIMD1-204ENST00000474665 PCDH10Q9P2E7 1040 aa9.66□□□□□ -0.86
LIMD1-204ENST00000474665 OVOS2A0A0J9YW53 1432 aa9.65□□□□□ -0.86
LIMD1-204ENST00000474665 OVOS2Q6IE36 1432 aa9.65□□□□□ -0.86
LIMD1-204ENST00000474665 PHRF1Q9P1Y6 1649 aaKnown RBP9.65□□□□□ -0.86
LIMD1-204ENST00000474665 NLRP6P59044 892 aa9.65□□□□□ -0.86
LIMD1-204ENST00000474665 AMER1Q5JTC6 1135 aaPredicted RBP9.65□□□□□ -0.86
LIMD1-204ENST00000474665 PTF1AQ7RTS3 328 aa9.65□□□□□ -0.86
LIMD1-204ENST00000474665 KLHL34Q8N239 644 aa9.65□□□□□ -0.86
LIMD1-204ENST00000474665 SLIT3O75094 1523 aa9.65□□□□□ -0.86
LIMD1-204ENST00000474665 KIF20BQ96Q89 1820 aa9.65□□□□□ -0.86
LIMD1-204ENST00000474665 PLSCR1O15162 318 aa9.64□□□□□ -0.87
LIMD1-204ENST00000474665 FBLN1P23142 703 aa9.64□□□□□ -0.87
LIMD1-204ENST00000474665 GGNBP2Q9H3C7 697 aa9.64□□□□□ -0.87
LIMD1-204ENST00000474665 STK32BQ9NY57 414 aa9.64□□□□□ -0.87
LIMD1-204ENST00000474665 NFAT5O94916 1531 aa9.64□□□□□ -0.87
LIMD1-204ENST00000474665 COL14A1Q05707 1796 aaKnown RBP9.64□□□□□ -0.87
LIMD1-204ENST00000474665 GCP02774 474 aa9.63□□□□□ -0.87
LIMD1-204ENST00000474665 NLRP13Q86W25 1043 aa9.63□□□□□ -0.87
LIMD1-204ENST00000474665 COL18A1P39060 1754 aa9.63□□□□□ -0.87
LIMD1-204ENST00000474665 MAP3K5Q99683 1374 aa9.63□□□□□ -0.87
LIMD1-204ENST00000474665 ZNF316A6NFI3 1004 aaPredicted RBP9.62□□□□□ -0.87
LIMD1-204ENST00000474665 APLP1P51693 650 aa9.62□□□□□ -0.87
LIMD1-204ENST00000474665 CHRNA2Q15822 529 aa9.62□□□□□ -0.87
LIMD1-204ENST00000474665 SLC15A2Q16348 729 aa9.62□□□□□ -0.87
LIMD1-204ENST00000474665 PRDM11Q9NQV5 511 aa9.62□□□□□ -0.87
LIMD1-204ENST00000474665 ANKRD26Q9UPS8 1709 aa9.62□□□□□ -0.87
LIMD1-204ENST00000474665 CGNL1Q0VF96 1302 aa9.61□□□□□ -0.87
LIMD1-204ENST00000474665 YBX3P16989 372 aaKnown RBP eCLIP9.61□□□□□ -0.871e-7■□□□□ 8.1
LIMD1-204ENST00000474665 DDX10Q13206 875 aaKnown RBP9.61□□□□□ -0.87
LIMD1-204ENST00000474665 BARGINQ6ZT62 677 aa9.61□□□□□ -0.87
LIMD1-204ENST00000474665 CPDO75976 1380 aa9.61□□□□□ -0.87
LIMD1-204ENST00000474665 KIAA0232Q92628 1395 aa9.61□□□□□ -0.87
LIMD1-204ENST00000474665 MAP2P11137 1827 aaKnown RBP9.61□□□□□ -0.87
LIMD1-204ENST00000474665 RGPD5Q99666 1765 aa9.6□□□□□ -0.87
LIMD1-204ENST00000474665 ZC3H6P61129 1189 aaKnown RBP9.6□□□□□ -0.87
LIMD1-204ENST00000474665 ARHGEF25Q86VW2 580 aa9.6□□□□□ -0.87
LIMD1-204ENST00000474665 NLGN2Q8NFZ4 835 aa9.6□□□□□ -0.87
LIMD1-204ENST00000474665 KNSTRNQ9Y448 316 aa9.6□□□□□ -0.87
LIMD1-204ENST00000474665 LTN1O94822 1766 aa9.6□□□□□ -0.87
LIMD1-204ENST00000474665 LMO7Q8WWI1 1683 aa9.59□□□□□ -0.87
LIMD1-204ENST00000474665 SOX12O15370 315 aa9.59□□□□□ -0.87
LIMD1-204ENST00000474665 COG3Q96JB2 828 aa9.59□□□□□ -0.87
LIMD1-204ENST00000474665 AXIN2Q9Y2T1 843 aa9.59□□□□□ -0.87
LIMD1-204ENST00000474665 NPC1L1Q9UHC9 1359 aa9.59□□□□□ -0.87
LIMD1-204ENST00000474665 GRIN3BO60391 1043 aa9.58□□□□□ -0.88
LIMD1-204ENST00000474665 EVA1CP58658 441 aa9.58□□□□□ -0.88
LIMD1-204ENST00000474665 TXNRD1Q16881 649 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 126.7 ms