RNA–Protein interactions for RNA: ENST00000472442.2

SCAMP4-207, Transcript of secretory carrier membrane protein 4, humanhuman

TSL 2

Gene SCAMP4, Length 2,973 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAMP4-207ENST00000472442 MAPK8IP3Q9UPT6 1336 aa16.88■□□□□ 0.29
SCAMP4-207ENST00000472442 PIK3R4Q99570 1358 aa16.87■□□□□ 0.29
SCAMP4-207ENST00000472442 PMFBP1Q8TBY8 1022 aa16.86■□□□□ 0.29
SCAMP4-207ENST00000472442 RGPD8O14715 1765 aaPredicted RBP16.86■□□□□ 0.29
SCAMP4-207ENST00000472442 OVOS2A0A0J9YW53 1432 aa16.86■□□□□ 0.29
SCAMP4-207ENST00000472442 OVOS2Q6IE36 1432 aa16.86■□□□□ 0.29
SCAMP4-207ENST00000472442 ANKLE2Q86XL3 938 aa16.86■□□□□ 0.29
SCAMP4-207ENST00000472442 SLKQ9H2G2 1235 aaPredicted RBP16.86■□□□□ 0.29
SCAMP4-207ENST00000472442 PRKAR2BP31323 418 aa16.85■□□□□ 0.29
SCAMP4-207ENST00000472442 SEC24BO95487 1268 aa16.85■□□□□ 0.29
SCAMP4-207ENST00000472442 RIPK4P57078 832 aa16.85■□□□□ 0.29
SCAMP4-207ENST00000472442 IGHDP01880 384 aa16.84■□□□□ 0.29
SCAMP4-207ENST00000472442 HMOX1P09601 288 aa16.84■□□□□ 0.29
SCAMP4-207ENST00000472442 RARSP54136 660 aaKnown RBP16.84■□□□□ 0.29
SCAMP4-207ENST00000472442 RRAGDQ9NQL2 400 aaPredicted RBP16.84■□□□□ 0.29
SCAMP4-207ENST00000472442 PNNQ9H307 717 aaKnown RBP16.84■□□□□ 0.29
SCAMP4-207ENST00000472442 MYH16Q9H6N6 1097 aa16.84■□□□□ 0.29
SCAMP4-207ENST00000472442 PHACTR3Q96KR7 559 aa16.83■□□□□ 0.29
SCAMP4-207ENST00000472442 TSR2Q969E8 191 aaKnown RBP16.83■□□□□ 0.28
SCAMP4-207ENST00000472442 SETD1BQ9UPS6 1966 aaKnown RBP16.82■□□□□ 0.28
SCAMP4-207ENST00000472442 CHD2O14647 1828 aaKnown RBP16.82■□□□□ 0.28
SCAMP4-207ENST00000472442 BECN1Q14457 450 aa16.82■□□□□ 0.28
SCAMP4-207ENST00000472442 VIRMAQ69YN4 1812 aaKnown RBP16.82■□□□□ 0.28
SCAMP4-207ENST00000472442 NALCNQ8IZF0 1738 aa16.81■□□□□ 0.28
SCAMP4-207ENST00000472442 USP31Q70CQ4 1352 aa16.81■□□□□ 0.28
SCAMP4-207ENST00000472442 NGDNQ8NEJ9 315 aaKnown RBP16.8■□□□□ 0.28
SCAMP4-207ENST00000472442 ARXQ96QS3 562 aa16.8■□□□□ 0.28
SCAMP4-207ENST00000472442 IL16Q14005 1332 aa16.79■□□□□ 0.28
SCAMP4-207ENST00000472442 ANKARQ7Z5J8 1434 aa16.79■□□□□ 0.28
SCAMP4-207ENST00000472442 L1TD1Q5T7N2 865 aaKnown RBP16.79■□□□□ 0.28
SCAMP4-207ENST00000472442 RBM33Q96EV2 1170 aaKnown RBP16.79■□□□□ 0.28
SCAMP4-207ENST00000472442 FMN2Q9NZ56 1722 aa16.79■□□□□ 0.28
SCAMP4-207ENST00000472442 PDE3AQ14432 1141 aa16.79■□□□□ 0.28
SCAMP4-207ENST00000472442 BCL2L13Q9BXK5 485 aa16.79■□□□□ 0.28
SCAMP4-207ENST00000472442 PEAK1Q9H792 1746 aa16.79■□□□□ 0.28
SCAMP4-207ENST00000472442 TTC21AQ8NDW8 1320 aa16.78■□□□□ 0.28
SCAMP4-207ENST00000472442 EXOSC9Q06265 439 aaKnown RBP16.77■□□□□ 0.28
SCAMP4-207ENST00000472442 EIF4A2Q14240 407 aaKnown RBP16.77■□□□□ 0.28
SCAMP4-207ENST00000472442 NFE2L2Q16236 605 aa16.77■□□□□ 0.28
SCAMP4-207ENST00000472442 PANK1Q8TE04 598 aa16.77■□□□□ 0.28
SCAMP4-207ENST00000472442 TNNQ9UQP3 1299 aa16.77■□□□□ 0.27
SCAMP4-207ENST00000472442 ANTXR1Q9H6X2 564 aa16.76■□□□□ 0.27
SCAMP4-207ENST00000472442 PIK3C2AO00443 1686 aa16.76■□□□□ 0.27
SCAMP4-207ENST00000472442 SOX12O15370 315 aa16.76■□□□□ 0.27
SCAMP4-207ENST00000472442 HSP90AB2PQ58FF8 381 aa16.76■□□□□ 0.27
SCAMP4-207ENST00000472442 CANXP27824 592 aaKnown RBP16.75■□□□□ 0.27
SCAMP4-207ENST00000472442 CLUAP1Q96AJ1 413 aa16.75■□□□□ 0.27
SCAMP4-207ENST00000472442 COG6Q9Y2V7 657 aa16.75■□□□□ 0.27
SCAMP4-207ENST00000472442 NPHP4O75161 1426 aaPredicted RBP16.75■□□□□ 0.27
SCAMP4-207ENST00000472442 RLBP1P12271 317 aa16.74■□□□□ 0.27
SCAMP4-207ENST00000472442 AEBP1Q8IUX7 1158 aa16.74■□□□□ 0.27
SCAMP4-207ENST00000472442 THUMPD2Q9BTF0 503 aaKnown RBP16.74■□□□□ 0.27
SCAMP4-207ENST00000472442 CT47B1P0C2W7 299 aaPredicted RBP16.74■□□□□ 0.27
SCAMP4-207ENST00000472442 MAP3K19Q56UN5 1328 aa16.74■□□□□ 0.27
SCAMP4-207ENST00000472442 SULT6B1Q6IMI4 303 aa16.71■□□□□ 0.27
SCAMP4-207ENST00000472442 DLG5Q8TDM6 1919 aa16.71■□□□□ 0.27
SCAMP4-207ENST00000472442 RGPD1P0DJD0 1748 aa16.71■□□□□ 0.27
SCAMP4-207ENST00000472442 XRCC6P12956 609 aaKnown RBP eCLIP16.71■□□□□ 0.27
SCAMP4-207ENST00000472442 SSH1Q8WYL5 1049 aa16.71■□□□□ 0.27
SCAMP4-207ENST00000472442 TBC1D2Q9BYX2 928 aa16.71■□□□□ 0.27
SCAMP4-207ENST00000472442 MARF1Q9Y4F3 1742 aaKnown RBP16.71■□□□□ 0.26
SCAMP4-207ENST00000472442 UPF2Q9HAU5 1272 aaKnown RBP16.7■□□□□ 0.26
SCAMP4-207ENST00000472442 ADGRL3Q9HAR2 1447 aa16.7■□□□□ 0.26
SCAMP4-207ENST00000472442 GOLGA6L3A6NEY3 463 aa16.7■□□□□ 0.26
SCAMP4-207ENST00000472442 NLRP6P59044 892 aa16.7■□□□□ 0.26
SCAMP4-207ENST00000472442 NUTM2GQ5VZR2 741 aa16.69■□□□□ 0.26
SCAMP4-207ENST00000472442 TBC1D32Q96NH3 1257 aa16.69■□□□□ 0.26
SCAMP4-207ENST00000472442 FAM83GA6ND36 823 aa16.69■□□□□ 0.26
SCAMP4-207ENST00000472442 SPRYD3Q8NCJ5 442 aa16.69■□□□□ 0.26
SCAMP4-207ENST00000472442 GZF1Q9H116 711 aaPredicted RBP16.69■□□□□ 0.26
SCAMP4-207ENST00000472442 PHF8Q9UPP1 1060 aa16.69■□□□□ 0.26
SCAMP4-207ENST00000472442 ZNF853P0CG23 659 aa16.68■□□□□ 0.26
SCAMP4-207ENST00000472442 NAP1L5Q96NT1 182 aaPredicted RBP16.68■□□□□ 0.26
SCAMP4-207ENST00000472442 PANK2Q9BZ23 570 aa16.68■□□□□ 0.26
SCAMP4-207ENST00000472442 SMC4Q9NTJ3 1288 aa16.68■□□□□ 0.26
SCAMP4-207ENST00000472442 SBNO1A3KN83 1393 aa16.68■□□□□ 0.26
SCAMP4-207ENST00000472442 FLT4P35916 1363 aa16.68■□□□□ 0.26
SCAMP4-207ENST00000472442 DCTN1Q14203 1278 aa16.67■□□□□ 0.26
SCAMP4-207ENST00000472442 ZKSCAN2Q63HK3 967 aa16.67■□□□□ 0.26
SCAMP4-207ENST00000472442 ABTB2Q8N961 1025 aa16.67■□□□□ 0.26
SCAMP4-207ENST00000472442 IFT57Q9NWB7 429 aa16.67■□□□□ 0.26
SCAMP4-207ENST00000472442 USP54Q70EL1 1684 aa16.66■□□□□ 0.26
SCAMP4-207ENST00000472442 FSD2A1L4K1 749 aa16.66■□□□□ 0.26
SCAMP4-207ENST00000472442 TRIM27P14373 513 aa16.65■□□□□ 0.26
SCAMP4-207ENST00000472442 MBIPQ9NS73 344 aa16.65■□□□□ 0.26
SCAMP4-207ENST00000472442 MCM4P33991 863 aa16.65■□□□□ 0.26
SCAMP4-207ENST00000472442 CALD1Q05682 793 aaKnown RBP16.65■□□□□ 0.26
SCAMP4-207ENST00000472442 AMPHP49418 695 aa16.65■□□□□ 0.26
SCAMP4-207ENST00000472442 GNAI1P63096 354 aa16.65■□□□□ 0.26
SCAMP4-207ENST00000472442 LMOD3Q0VAK6 560 aa16.65■□□□□ 0.26
SCAMP4-207ENST00000472442 NWD1Q149M9 1564 aa16.64■□□□□ 0.25
SCAMP4-207ENST00000472442 ESCO1Q5FWF5 840 aa16.64■□□□□ 0.25
SCAMP4-207ENST00000472442 TSPYL6Q8N831 410 aa16.64■□□□□ 0.25
SCAMP4-207ENST00000472442 NOB1Q9ULX3 412 aaKnown RBP16.64■□□□□ 0.25
SCAMP4-207ENST00000472442 ARHGEF10O15013 1369 aa16.64■□□□□ 0.25
SCAMP4-207ENST00000472442 DZIP1LQ8IYY4 767 aaKnown RBP16.64■□□□□ 0.25
SCAMP4-207ENST00000472442 CFAP44Q96MT7 982 aa16.64■□□□□ 0.25
SCAMP4-207ENST00000472442 PCDHB15Q9Y5E8 787 aa16.64■□□□□ 0.25
SCAMP4-207ENST00000472442 VAMP4O75379 141 aa16.63■□□□□ 0.25
SCAMP4-207ENST00000472442 CLCN1P35523 988 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms